Incorporating physiological knowledge into correlative species distribution models minimizes bias introduced by the choice of calibration area
Zhixin Zhang, Jinxin Zhou, Jorge García Molinos, Stefano Mammola, Ákos Bede-Fazekas, Xiao Feng, Daisuke Kitazawa, Jorge Assis, Tianlong Qiu, Qiang Lin
Incorporating physiological knowledge into correlative species distribution models minimizes bias introduced by the choice of calibration area
Correlative species distribution models (SDMs) are important tools to estimate species’ geographic distribution across space and time, but their reliability heavily relies on the availability and quality of occurrence data. Estimations can be biased when occurrences do not fully represent the environmental requirement of a species. We tested to what extent species’ physiological knowledge might influence SDM estimations. Focusing on the Japanese sea cucumber Apostichopus japonicus within the coastal ocean of East Asia, we compiled a comprehensive dataset of occurrence records. We then explored the importance of incorporating physiological knowledge into SDMs by calibrating two types of correlative SDMs: a naïve model that solely depends on environmental correlates, and a physiologically informed model that further incorporates physiological information as priors. We further tested the models’ sensitivity to calibration area choices by fitting them with different buffered areas around known presences. Compared with naïve models, the physiologically informed models successfully captured the negative influence of high temperature on A. japonicus and were less sensitive to the choice of calibration area. The naïve models resulted in more optimistic prediction of the changes of potential distributions under climate change (i.e., larger range expansion and less contraction) than the physiologically informed models. Our findings highlight benefits from incorporating physiological information into correlative SDMs, namely mitigating the uncertainties associated with the choice of calibration area. Given these promising features, we encourage future SDM studies to consider species physiological information where available.
Bayesian approach / Climate change / Habitat suitability / Physiological knowledge / Species distribution model
[1] |
|
[2] |
|
[3] |
Araújo MB, Anderson RP, Barbosa AM, Beale CM, Dormann CF, Early R, Garcia RA, Guisan A, Maiorano L, Naimi B, O’Hara RB, Zimmermann NE, Rahbek C (2019) Standards for distribution models in biodiversity assessments. Sci Adv 5:eaat4858
|
[4] |
|
[5] |
|
[6] |
|
[7] |
|
[8] |
Basher Z, Bowden DA, Costello MJ (2018) Global marine environment datasets (GMED) version 2.0 (Rev.02.2018). http://gmed.auckland.ac.nz
|
[9] |
Bayes T (1764) An essay toward solving a problem in the doctrine of chances. Biometrika 45:296–315
|
[10] |
|
[11] |
|
[12] |
|
[13] |
|
[14] |
|
[15] |
|
[16] |
|
[17] |
|
[18] |
China Fishery Statistical Yearbook (2020) Ministry of Agriculture China Agriculture Press, Beijing, pp 22–50
|
[19] |
|
[20] |
|
[500] |
Dong Y, Bao M, Cheng J, Chen Y, Du J, Gao Y, Hu L, Li X, Liu C, Qin G, Sun J, Wang X, Yang G, Zhang C, Zhang X, Zhang Y, Zhang Z, Zhan A, He Q, Sun J et al (2024) Advances of marine biogeography in China: species distribution model and its applications. Biodivers Sci. https://doi.org/10.17520/biods.2023453 (in Chinese with English abstract)
|
[21] |
|
[22] |
|
[23] |
|
[24] |
Gaines SD, Costello C, Owashi B, Mangin T, Bone J, García Molinos J, Burden M, Dennis H, Halpern BS, Kappel CV, Kleisner KM, Ovando D (2018) Improved fisheries management could offset many negative effects of climate change. Sci Adv 4:eaao1378
|
[25] |
|
[26] |
|
[27] |
|
[28] |
|
[29] |
|
[30] |
Hamel JF, Mercier A (2013) Apostichopus japonicus. The IUCN red list of threatened species 2013: e.T180424A1629389. https://doi.org/10.2305/IUCN.UK.2013-1.RLTS.T180424A1629389.en. Downloaded on 14 June 2021
|
[31] |
|
[32] |
|
[33] |
Hof C (2021) Towards more integration of physiology, dispersal and land-use change to understand the responses of species to climate change. J Exp Biol 224:jeb238352
|
[34] |
|
[35] |
|
[36] |
IPBES (Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services) (2019) Summary for policymakers of the global assessment report on biodiversity and ecosystem services of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services. IPBES
|
[37] |
|
[38] |
|
[39] |
|
[40] |
|
[41] |
|
[42] |
|
[43] |
|
[44] |
|
[45] |
|
[46] |
|
[47] |
|
[48] |
|
[49] |
|
[50] |
|
[51] |
|
[52] |
|
[53] |
|
[54] |
|
[55] |
|
[56] |
|
[57] |
|
[58] |
|
[59] |
|
[60] |
|
[61] |
|
[62] |
R Core Team (2020) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org
|
[63] |
|
[64] |
|
[65] |
|
[66] |
|
[67] |
|
[68] |
|
[69] |
|
[70] |
|
[71] |
|
[72] |
|
[73] |
|
[74] |
Taheri S, Naimi B, Rahbek C, Araújo MB (2021) Improvements in reports of species redistribution under climate change are required. Sci Adv 7:eabe1110
|
[75] |
|
[76] |
|
[77] |
|
[78] |
|
[79] |
|
[80] |
|
[81] |
|
[82] |
|
[83] |
|
[84] |
|
[85] |
|
[86] |
|
[87] |
Yang H, Hamel JF, Mercier A (eds) (2015) The sea cucumber Apostichopus japonicus: history, biology and aquaculture. Academic Press, New York, p 453
|
[88] |
|
[501] |
|
[89] |
|
[90] |
|
[91] |
|
[92] |
|
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