Integrative Single-Cell Analysis Reveals Targetable Vacuole Membrane Protein 1-Mediated Mechanism of Tumor Angiogenesis in Glioblastoma

Lei Jin , Bo Chen , Junbo Liao , Wenlong Guo , Zhiyuan Zhu , Salida Ali , Gilberto Ka-Kit Leung , Peng Wang , Karrie M. Kiang

MedComm ›› 2026, Vol. 7 ›› Issue (2) : e70619

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MedComm ›› 2026, Vol. 7 ›› Issue (2) :e70619 DOI: 10.1002/mco2.70619
ORIGINAL ARTICLE
Integrative Single-Cell Analysis Reveals Targetable Vacuole Membrane Protein 1-Mediated Mechanism of Tumor Angiogenesis in Glioblastoma
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Abstract

Vacuole membrane Protein 1 (VMP1) is widely known to be an important mediator in the formation of autophagosomes, playing a crucial role in macroautophagic processes. Emerging evidence suggests that VMP1 may have context-dependent functions across diverse cancer types and different tumor microenvironments, both within the context of autophagy and beyond. Here, using glioblastoma as a cancer model, we found that VMP1 can promote tumor growth independent of its autophagic functions. We observed significant upregulation of VMP1 in glioblastoma, which was correlated with poorer prognosis, and its ability to promote tumor growth without altering autophagic flux. Bulk, single-cell, and spatial transcriptomics analyses revealed that the pro-angiogenic markers were enriched in glioblastomas with high VMP1 expression. We further validated that overexpression of VMP1 would enhance angiogenesis through VEGFA-VEGFR2 signaling-mediated activation in endothelial cells. Treatment with bevacizumab, a monoclonal antibody against VEGFA, significantly inhibited VMP1-driven tumor growth and prolonged survival in mice. Our study thus uncovered non-autophagic functions of VMP1 as an important mediator in glioblastoma angiogenesis with the potential for therapeutic targeting.

Keywords

angiogenesis / autophagy / glioblastoma / transmembrane protein / tumor microenvironment

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Lei Jin, Bo Chen, Junbo Liao, Wenlong Guo, Zhiyuan Zhu, Salida Ali, Gilberto Ka-Kit Leung, Peng Wang, Karrie M. Kiang. Integrative Single-Cell Analysis Reveals Targetable Vacuole Membrane Protein 1-Mediated Mechanism of Tumor Angiogenesis in Glioblastoma. MedComm, 2026, 7(2): e70619 DOI:10.1002/mco2.70619

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References

[1]

S. Marx, T. Dal Maso, and J. W. Chen, “Transmembrane (TMEM) Protein Family Members: Poorly Characterized Even If Essential for the Metastatic Process,” Seminars in Cancer Biology 60 (2020): 96–106.

[2]

K. Schmit and C. Michiels, “TMEM Proteins in Cancer: A Review,” Frontiers in Pharmacology 9 (2018): 1345.

[3]

F. Okawa, Y. Hama, S. Zhang, et al., “Evolution and Insights Into the Structure and Function of the DedA Superfamily Containing TMEM41B and VMP1,” Journal of Cell Science 134, no. 8 (2021): jcs255877.

[4]

N. J. Dusetti, Y. F. Jiang, M. I. Vaccaro, et al., “Cloning and Expression of the Rat Vacuole Membrane Protein 1 (VMP1), a New Gene Activated in Pancreas With Acute Pancreatitis, Which Promotes Vacuole Formation,” Biochemical and Biophysical Research Communications 290, no. 2 (2002): 641–649.

[5]

M. I. Vaccaro, A. Ropolo, D. Grasso, and J. L. Iovanna, “A Novel Mammalian Trans-Membrane Protein Reveals an Alternative Initiation Pathway for Autophagy,” Autophagy 4, no. 3 (2008): 388–390.

[6]

A. C. Nascimbeni, F. Giordano, N. Dupont, et al., “ER-Plasma Membrane Contact Sites Contribute to Autophagosome Biogenesis by Regulation of Local PI3P Synthesis,” EMBO Journal 36, no. 14 (2017): 2018–2033.

[7]

Y. G. Zhao, Y. Chen, G. Miao, et al., “The ER-Localized Transmembrane Protein EPG-3/VMP1 Regulates SERCA Activity to Control ER-Isolation Membrane Contacts for Autophagosome Formation,” Molecular Cell 67, no. 6 (2017): 974–989.e6.

[8]

N. Mizushima and M. Komatsu, “Autophagy: Renovation of Cells and Tissues,” Cell 147, no. 4 (2011): 728–741.

[9]

B. Levine and G. Kroemer, “Biological Functions of Autophagy Genes: A Disease Perspective,” Cell 176, no. 1–2 (2019): 11–42.

[10]

Y. Yang, G. Karsli-Uzunbas, L. Poillet-Perez, et al., “Autophagy Promotes Mammalian Survival by Suppressing Oxidative Stress and p53,” Genes & Development 34, no. 9–10 (2020): 688–700.

[11]

V. J. A. Barthet, M. Brucoli, M. Ladds, et al., “Autophagy Suppresses the Formation of Hepatocyte-Derived Cancer-Initiating Ductular Progenitor Cells in the Liver,” Science Advances 7, no. 23 (2021): eabf9141.

[12]

S. Fujii, S. Mitsunaga, M. Yamazaki, et al., “Autophagy Is Activated in Pancreatic Cancer Cells and Correlates With Poor Patient Outcome,” Cancer Science 99, no. 9 (2008): 1813–1819.

[13]

Y. Tang, L. Sprinzen, Y. Terada, et al., “Autophagy Modulates Glioblastoma Cell Sensitivity to Selinexor-Mediated XPO1 Inhibition,” Neuro-Oncology 27 (2024): 1210–1226.

[14]

J. Debnath, N. Gammoh, and K. M. Ryan, “Autophagy and Autophagy-Related Pathways in Cancer,” Nature Reviews Molecular Cell Biology 24, no. 8 (2023): 560–575.

[15]

R. Mathew and E. White, “Autophagy, Stress, and Cancer Metabolism: What Doesn't Kill You Makes You Stronger,” Cold Spring Harbor Symposia Quantitative Biology 76 (2011): 389–396.

[16]

F. J. Renna, C. D. Gonzalez, and M. I. Vaccaro, “Decoding the Versatile Landscape of Autophagic Protein VMP1 in Cancer: A Comprehensive Review Across Tissue Types and Regulatory Mechanisms,” International Journal of Molecular Sciences 25, no. 7 (2024): 3758.

[17]

M. Gilabert, M. I. Vaccaro, M. E. Fernandez-Zapico, et al., “Novel Role of VMP1 as Modifier of the Pancreatic Tumor Cell Response to Chemotherapeutic Drugs,” Journal of Cellular Physiology 228, no. 9 (2013): 1834–1843.

[18]

C. Loncle, M. I. Molejon, S. Lac, et al., “The Pancreatitis-Associated Protein VMP1, a Key Regulator of Inducible Autophagy, Promotes Kras(G12D)-Mediated Pancreatic Cancer Initiation,” Cell Death & Disease 7, no. 7 (2016): e2295.

[19]

A. Amirfallah, A. Arason, H. Einarsson, et al., “High Expression of the Vacuole Membrane Protein 1 (VMP1) Is a Potential Marker of Poor Prognosis in HER2 Positive Breast Cancer,” PLoS ONE 14, no. 8 (2019): e0221413.

[20]

L. Guo, L. Y. Yang, C. Fan, G. D. Chen, and F. Wu, “Novel Roles of Vmp1: Inhibition Metastasis and Proliferation of Hepatocellular Carcinoma,” Cancer Science 103, no. 12 (2012): 2110–2119.

[21]

Q. Ying, L. Liang, W. Guo, et al., “Hypoxia-Inducible MicroRNA-210 Augments the Metastatic Potential of Tumor Cells by Targeting Vacuole Membrane Protein 1 in Hepatocellular Carcinoma,” Hepatology 54, no. 6 (2011): 2064–2075.

[22]

D. Liu, H. Zhu, L. Cheng, et al., “Hypoxia-Induced Galectin-8 Maintains Stemness in Glioma Stem Cells via Autophagy Regulation,” Neuro-Oncology 26, no. 5 (2024): 872–888.

[23]

J. Yu, G. Gao, X. Wei, and Y. Wang, “TTK Protein Kinase Promotes Temozolomide Resistance Through Inducing Autophagy in Glioblastoma,” BMC Cancer 22, no. 1 (2022): 786.

[24]

L. C. Tabara and R. Escalante, “VMP1 Establishes ER-Microdomains That Regulate Membrane Contact Sites and Autophagy,” PLoS ONE 11, no. 11 (2016): e0166499.

[25]

D. N. Louis, A. Perry, G. Reifenberger, et al., “The 2016 World Health Organization Classification of Tumors of the Central Nervous System: A Summary,” Acta Neuropathologica 131, no. 6 (2016): 803–820.

[26]

Q. Wang, B. Hu, X. Hu, et al., “Tumor Evolution of Glioma-Intrinsic Gene Expression Subtypes Associates With Immunological Changes in the Microenvironment,” Cancer Cell 32, no. 1 (2017): 42–56.e6.

[27]

L. Chen, X. Xie, T. Wang, et al., “ARL13B Promotes Angiogenesis and Glioma Growth by Activating VEGFA-VEGFR2 Signaling,” Neuro-Oncology 25, no. 5 (2023): 871–885.

[28]

K. M. Kiang, P. Zhang, N. Li, Z. Zhu, L. Jin, and G. K. Leung, “Loss of Cytoskeleton Protein ADD3 Promotes Tumor Growth and Angiogenesis in Glioblastoma Multiforme,” Cancer Letters 474 (2020): 118–126.

[29]

D. J. Klionsky, G. Petroni, R. K. Amaravadi, et al., “Autophagy in Major Human Diseases,” EMBO Journal 40, no. 19 (2021): e108863.

[30]

C. M. Kenific and J. Debnath, “Cellular and Metabolic Functions for Autophagy in Cancer Cells,” Trends in Cell Biology 25, no. 1 (2015): 37–45.

[31]

W. Lin, Y. Sun, X. Qiu, Q. Huang, L. Kong, and J. J. Lu, “VMP1, a Novel Prognostic Biomarker, Contributes to Glioma Development by Regulating Autophagy,” Journal of Neuroinflammation 18, no. 1 (2021): 165.

[32]

T. Wrzesinski, M. Szelag, W. A. Cieslikowski, et al., “Expression of Pre-Selected TMEMs With Predicted ER Localization as Potential Classifiers of ccRCC Tumors,” BMC Cancer 15 (2015): 518.

[33]

Y. Liu, Q. Zheng, G. He, et al., “Transmembrane Protein 215 Promotes Angiogenesis by Maintaining Endothelial Cell Survival,” Journal of Cellular Physiology 234, no. 6 (2019): 9525–9534.

[34]

Y. Zhang, Y. Kong, H. Guo, Y. Liu, Y. Zang, and J. Li, “Inner Nuclear Membrane Protein TMEM201 Maintains Endothelial Cell Migration and Angiogenesis by Interacting With the LINC Complex,” Journal of Molecular Cell Biology 14, no. 3 (2022): mjac017.

[35]

S. R. Zack, R. Nikolaienko, B. Cook, R. Melki, A. V. Zima, and E. M. Campbell, “Vacuole Membrane Protein 1 (VMP1) Restricts NLRP3 Inflammasome Activation by Modulating SERCA Activity and Autophagy,” preprint, Research Square, January 27, 2023.

[36]

B. Cohen, H. Tempelhof, T. Raz, et al., “BACH Family Members Regulate Angiogenesis and Lymphangiogenesis by Modulating VEGFC Expression,” Life Science Alliance 3, no. 4 (2020): e202000666.

[37]

B. K. Ahir, H. H. Engelhard, and S. S. Lakka, “Tumor Development and Angiogenesis in Adult Brain Tumor: Glioblastoma,” Molecular Neurobiology 57, no. 5 (2020): 2461–2478.

[38]

R. W. Pang and R. T. Poon, “Clinical Implications of Angiogenesis in Cancers,” Vascular Health and Risk Management 2, no. 2 (2006): 97–108.

[39]

Y. Tsubata, A. Sutani, T. Okimoto, et al., “Comparative Analysis of Tumor Angiogenesis and Clinical Features of 55 Cases of Pleomorphic Carcinoma and Adenocarcinoma of the Lung,” Anticancer Research 35, no. 1 (2015): 389–394.

[40]

R. Jain, J. Gutierrez, J. Narang, et al., “In Vivo Correlation of Tumor Blood Volume and Permeability With Histologic and Molecular Angiogenic Markers in Gliomas,” AJNR. American Journal of Neuroradiology 32, no. 2 (2011): 388–394.

[41]

W. Taal, H. M. Oosterkamp, A. M. Walenkamp, et al., “Single-Agent Bevacizumab or Lomustine Versus a Combination of Bevacizumab Plus Lomustine in Patients With Recurrent Glioblastoma (BELOB Trial): A Randomised Controlled Phase 2 Trial,” Lancet Oncology 15, no. 9 (2014): 943–953.

[42]

M. Weller, M. van den Bent, M. Preusser, et al., “EANO Guidelines on the Diagnosis and Treatment of Diffuse Gliomas of Adulthood,” Nature Reviews Clinical Oncology 18, no. 3 (2021): 170–186.

[43]

S. P. Weathers, X. Han, D. D. Liu, et al., “A Randomized Phase II Trial of Standard Dose Bevacizumab Versus Low Dose Bevacizumab Plus Lomustine (CCNU) in Adults With Recurrent Glioblastoma,” Journal of Neuro-Oncology 129, no. 3 (2016): 487–494.

[44]

X. Li, S. He, and B. Ma, “Autophagy and Autophagy-Related Proteins in Cancer,” Molecular Cancer 19, no. 1 (2020): 12.

[45]

R. Ciccone, C. Quintarelli, A. Camera, et al., “GD2-Targeting CAR T-Cell Therapy for Patients With GD2+ Medulloblastoma,” Clinical Cancer Research 30, no. 11 (2024): 2545–2557.

[46]

I. Korsunsky, N. Millard, J. Fan, et al., “Fast, Sensitive and Accurate Integration of Single-Cell Data With Harmony,” Nature Methods 16, no. 12 (2019): 1289–1296.

[47]

L. Wang, H. Babikir, S. Müller, et al., “The Phenotypes of Proliferating Glioblastoma Cells Reside on a Single Axis of Variation,” Cancer Discovery 9, no. 12 (2019): 1708–1719.

[48]

R. Wang, R. Sharma, X. Shen, et al., “Adult Human Glioblastomas Harbor Radial Glia-Like Cells,” Stem Cell Reports 14, no. 2 (2020): 338–350.

[49]

L. Wang, F. Catalan, K. Shamardani, H. Babikir, and A. Diaz, “Ensemble Learning for Classifying Single-Cell Data and Projection Across Reference Atlases,” Bioinformatics 36, no. 11 (2020): 3585–3587.

[50]

H. Folkerts, A. T. Wierenga, F. A. van den Heuvel, et al., “Elevated VMP1 Expression in Acute Myeloid Leukemia Amplifies Autophagy and Is Protective Against Venetoclax-Induced Apoptosis,” Cell Death & Disease 10, no. 6 (2019): 421.

[51]

L. Jin, K. M. Kiang, S. Y. Cheng, and G. K. Leung, “Pharmacological Inhibition of Serine Synthesis Enhances Temozolomide Efficacy by Decreasing O(6)-Methylguanine DNA Methyltransferase (MGMT) Expression and Reactive Oxygen Species (ROS)-Mediated DNA Damage in Glioblastoma,” Laboratory Investigation 102, no. 2 (2022): 194–203.

[52]

S. Hänzelmann, R. Castelo, and J. Guinney, “GSVA: Gene Set Variation Analysis for Microarray and RNA-Seq Data,” BMC Bioinformatics 14 (2013): 7.

[53]

J. Tanevski, R. O. R. Flores, A. Gabor, D. Schapiro, and J. Saez-Rodriguez, “Explainable Multiview Framework for Dissecting Spatial Relationships From Highly Multiplexed Data,” Genome Biology 23, no. 1 (2022): 97.

[54]

C. Kuppe, R. O. Ramirez Flores, and Z. Li, “Spatial Multi-Omic Map of Human Myocardial Infarction,” Nature 608, no. 7924 (2022): 766–777.

[55]

J. Bäckdahl, L. Franzén, L. Massier, et al., “Spatial Mapping Reveals Human Adipocyte Subpopulations With Distinct Sensitivities to Insulin,” Cell Metabolism 33, no. 9 (2021): 1869–1882.e6.

[56]

S. Jin, C. F. Guerrero-Juarez, L. Zhang, et al., “Inference and Analysis of Cell-Cell Communication Using CellChat,” Nature Communications 12, no. 1 (2021): 1088.

[57]

D. Pham, X. Tan, J. Xu, et al., “stLearn: Integrating Spatial Location, Tissue Morphology and Gene Expression to Find Cell Types, Cell-Cell Interactions and Spatial Trajectories Within Undissociated Tissues,” preprint, BioRxiv, May 31, 2020.

[58]

Z. Cang, Y. Zhao, A. A. Almet, et al., “Screening Cell-Cell Communication in Spatial Transcriptomics via Collective Optimal Transport,” Nature Methods 20, no. 2 (2023): 218–228.

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