Generation of renal tubular organoids from adult SOX9+ kidney progenitor cells
Dewei Zhou, Dandan Li, Hao Nie, Jun Duan, Sarah Liu, Yujia Wang, Wei Zuo
Generation of renal tubular organoids from adult SOX9+ kidney progenitor cells
The pathogenesis of several kidney diseases results in the eventual destruction of the renal tubular system, which can progress to end-stage renal disease. Previous studies have demonstrated the involvement of a population of SOX9-positive cells in kidney regeneration and repair process following kidney injury. However, the ability of these cells to autonomously generate kidney organoids has never been investigated. Here, we isolated SOX9+ kidney progenitor cells (KPCs) from both mice and humans and tested their differentiation potential in vitro. The data showed that the human SOX9+ KPC could self-assemble into organoids with kidney-like morphology. We also used single-cell RNA sequencing to characterize the organoid cell populations and identified four distinct types of renal tubular cells. Compared to the induced pluripotent stem cell-derived kidney organoids, KPC demonstrated more tubular differentiation potential but failed to differentiate into glomerular cells. KPC-derived organoid formation involved the expression of genes related to metanephric development and followed a similar mechanism to renal injury repair in acute kidney injury patients. Altogether, our study provided a potentially useful approach to generating kidney tubular organoids for future application.
kidney organoids / single-cell sequencing / kidney progenitor cells / renal tubular / acute kidney injury
[1] |
Sato T, Vries RG, Snippert HJ, et al. Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche. Nature 2009;459:262–5.
CrossRef
Google scholar
|
[2] |
Corro C, Novellasdemunt L, Li VSW. A brief history of organoids. Am J Physiol Cell Physiol 2020;319:C151–C65.
CrossRef
Google scholar
|
[3] |
Takasato M, Er PX, Becroft M, et al. Directing human embryonic stem cell differentiation towards a renal lineage generates a self- organizing kidney. Nat Cell Biol 2014;16:118–26.
CrossRef
Google scholar
|
[4] |
Taguchi A, Kaku Y, Ohmori T, et al. Redefining the in vivo origin of metanephric nephron progenitors enables generation of complex kidney structures from pluripotent stem cells. Cell Stem Cell 2014;14:53–67.
CrossRef
Google scholar
|
[5] |
Freedman BS, Brooks CR, Lam AQ, et al. Modelling kidney disease with CRISPR-mutant kidney organoids derived from human pluripotent epiblast spheroids. Nat Commun 2015;6:8715.
CrossRef
Google scholar
|
[6] |
Morizane R, Lam AQ, Freedman BS, et al. Nephron organoids derived from human pluripotent stem cells model kidney development and injury. Nat Biotechnol 2015;33:1193–200.
CrossRef
Google scholar
|
[7] |
Takasato M, Er PX, Chiu HS, et al. Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis. Nature 2015;526:564–8.
CrossRef
Google scholar
|
[8] |
Tanigawa S, Islam M, Sharmin S, et al. Organoids from nephrotic disease-derived iPSCs identify impaired NEPHRIN localization and slit diaphragm formation in kidney podocytes. Stem Cell Rep 2018;11:727–40.
CrossRef
Google scholar
|
[9] |
Hale LJ, Howden SE, Phipson B, et al. 3D organoid-derived human glomeruli for personalised podocyte disease modelling and drug screening. Nat Commun 2018;9:5167.
CrossRef
Google scholar
|
[10] |
Little MH, Combes AN. Kidney organoids: accurate models or fortunate accidents. Genes Dev 2019;33:1319–45.
CrossRef
Google scholar
|
[11] |
Nishinakamura R. Human kidney organoids: progress and remaining challenges. Nat Rev Nephrol 2019;15:613–24.
CrossRef
Google scholar
|
[12] |
Cruz NM, Song X, Czerniecki SM, et al. Organoid cystogenesis reveals a critical role of microenvironment in human polycystic kidney disease. Nat Mater 2017;16:1112–9.
CrossRef
Google scholar
|
[13] |
Tran T, Song CJ, Nguyen T, et al. A scalable organoid model of human autosomal dominant polycystic kidney disease for disease mechanism and drug discovery. Cell Stem Cell 2022;29:1083–1101.e7.
CrossRef
Google scholar
|
[14] |
Wang G, Heijs B, Kostidis S, et al. Spatial dynamic metabolomics identifies metabolic cell fate trajectories in human kidney differentiation. Cell Stem Cell 2022;29:1580–1593.e7.
CrossRef
Google scholar
|
[15] |
Jansen J, Reimer KC, Nagai JS, et al; COVID Moonshot consortium. SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids. Cell Stem Cell 2022;29:217–231.e8.
|
[16] |
Schutgens F, Rookmaaker MB, Margaritis T, et al. Tubuloids derived from human adult kidney and urine for personalized disease modeling. Nat Biotechnol 2019;37:303–13.
CrossRef
Google scholar
|
[17] |
Guimaraes-Camboa N, Cattaneo P, Sun Y, et al. Pericytes of multiple organs do not behave as mesenchymal stem cells in vivo. Cell Stem Cell 2017;20:345–359.e5.
CrossRef
Google scholar
|
[18] |
Romagnani P, Lasagni L, Remuzzi G. Renal progenitors: an evolutionary conserved strategy for kidney regeneration. Nat Rev Nephrol 2013;9:137–46.
CrossRef
Google scholar
|
[19] |
Berger K, Moeller MJ. Mechanisms of epithelial repair and regeneration after acute kidney injury. Semin Nephrol 2014;34:394–403.
CrossRef
Google scholar
|
[20] |
Kumar S, Liu J, Pang P, et al. Sox9 activation highlights a cellular pathway of renal repair in the acutely injured mammalian kidney. Cell Rep 2015;12:1325–38.
CrossRef
Google scholar
|
[21] |
Wang Y, Zhao Y, Zhao Z, et al. Single-cell RNA-Seq analysis identified kidney progenitor cells from human urine. Protein Cell 2021;12:305–12.
CrossRef
Google scholar
|
[22] |
Reginensi A, Clarkson M, Neirijnck Y, et al. SOX9 controls epithelial branching by activating RET effector genes during kidney development. Hum Mol Genet 2011;20:1143–53.
CrossRef
Google scholar
|
[23] |
Ye Y, Wang B, Jiang X, et al. Proliferative capacity of stem/progenitor-like cells in the kidney may associate with the out-come of patients with acute tubular necrosis. Hum Pathol 2011;42:1132–41.
CrossRef
Google scholar
|
[24] |
Bussolati B, Bruno S, Grange C, et al. Isolation of renal progenitor cells from adult human kidney. Am J Pathol 2005;166:545–55.
CrossRef
Google scholar
|
[25] |
Sagrinati C, Netti GS, Mazzinghi B, et al. Isolation and characterization of multipotent progenitor cells from the Bowman’s capsule of adult human kidneys. J Am Soc Nephrol 2006;17:2443–56.
CrossRef
Google scholar
|
[26] |
Kollias G, Evans DJ, Ritter M, et al. Ectopic expression of Thy-1 in the kidneys of transgenic mice induces functional and proliferative abnormalities. Cell 1987;51:21–31.
CrossRef
Google scholar
|
[27] |
Lasagni L, Ballerini L, Angelotti ML, et al. Notch activation differentially regulates renal progenitors proliferation and differentiation toward the podocyte lineage in glomerular disorders. Stem Cells 2010;28:1674–85.
CrossRef
Google scholar
|
[28] |
Surendran K, Simon C. CNP gene expression is activated by Wnt signaling and correlates with Wnt4 expression during renal injury. Am J Physiol Renal Physiol 2003;284:653–62.
CrossRef
Google scholar
|
[29] |
Kelly KJ, Kluve-Beckerman B, Zhang J, et al. Intravenous cell therapy for acute renal failure with serum amyloid A protein-reprogrammed cells. Am J Physiol Renal Physiol 2010;299:F453–64.
CrossRef
Google scholar
|
[30] |
Metallo CM, Ji L, de Pablo JJ, et al. Retinoic acid and bone morphogenetic protein signaling synergize to efficiently direct epithelial differentiation of human embryonic stem cells. Stem Cells 2008;26:372–80.
CrossRef
Google scholar
|
[31] |
Liu Y, Centracchio JN, Lin L, et al. Constitutive expression of HGF modulates renal epithelial cell phenotype and induces c-met and fibronectin expression. Exp Cell Res 1998;242:174–85.
CrossRef
Google scholar
|
[32] |
Burdeyron P, Giraud S, Hauet T, et al. Urine-derived stem/progenitor cells: a focus on their characterization and potential. World J Stem Cells 2020;12:1080–96.
CrossRef
Google scholar
|
[33] |
Liao J, Yu Z, Chen Y, et al. Single-cell RNA sequencing of human kidney. Sci Data 2020;7:4.
CrossRef
Google scholar
|
[34] |
Kirita Y, Wu H, Uchimura K, et al. Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury. Proc Natl Acad Sci U S A 2020;117:15874–83.
CrossRef
Google scholar
|
[35] |
Lake BB, Chen S, Hoshi M, et al. A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys. Nat Commun 2019;10:2832.
CrossRef
Google scholar
|
[36] |
Combes AN, Zappia L, Er PX, et al. Single-cell analysis reveals congruence between kidney organoids and human fetal kidney. Genome Med 2019;11:3.
CrossRef
Google scholar
|
[37] |
Hochane M, van den Berg PR, Fan X, et al. Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development. PLoS Biol 2019;17(2):e3000152.
CrossRef
Google scholar
|
[38] |
Menon R, Otto EA, Kokoruda A, et al. Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney. Development 2018;145(16):dev164038.
CrossRef
Google scholar
|
[39] |
Ransick A, Lindstrom NO, Liu J, et al. Single-cell profiling reveals sex, lineage, and regional diversity in the mouse kidney. Dev Cell 2019;51:399–413.e7.
CrossRef
Google scholar
|
[40] |
Clark JZ, Chen L, Chou CL, et al. Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data. Kidney Int 2019;95:787–96.
CrossRef
Google scholar
|
[41] |
Chen L, Lee JW, Chou CL, et al. Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq. Proc Natl Acad Sci U S A 2017;114:E9989–98.
CrossRef
Google scholar
|
[42] |
Harder JL, Menon R, Otto EA, et al; European Renal cDNA Bank (ERCB). Organoid single cell profiling identifies a transcriptional signature of glomerular disease. JCI Insight 2019;4: e122697.
CrossRef
Google scholar
|
[43] |
Gupta N, Matsumoto T, Hiratsuka K, et al. Modeling injury and repair in kidney organoids reveals that homologous recombination governs tubular intrinsic repair. Sci Transl Med 2022;14:eabj4772.
CrossRef
Google scholar
|
[44] |
Howden SE, Vanslambrouck JM, Wilson SB, et al. Reporter-based fate mapping in human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation. EMBO Rep 2019;20:e47483.
CrossRef
Google scholar
|
[45] |
Morizane R, Bonventre JV. Generation of nephron progenitor cells and kidney organoids from human pluripotent stem cells. Nat Protoc 2017;12:195–207.
CrossRef
Google scholar
|
[46] |
Lawlor KT, Vanslambrouck JM, Higgins JW, et al. Cellular extrusion bioprinting improves kidney organoid reproducibility and conformation. Nat Mater 2021;20:260–71.
CrossRef
Google scholar
|
[47] |
Fu Q, Colgan SP, Shelley CS. Hypoxia: the force that drives chronic kidney disease. Clin Med Res 2016;14:15–39.
CrossRef
Google scholar
|
[48] |
Kumar PA, Hu Y, Yamamoto Y, et al. Distal airway stem cells yield alveoli in vitro and during lung regeneration following H1N1 influenza infection. Cell 2011;147:525–38.
CrossRef
Google scholar
|
[49] |
van den Berg CW, Ritsma L, Avramut MC, et al. Renal subcapsular transplantation of PSC-derived kidney organoids induces neo- vasculogenesis and significant glomerular and tubular maturation in vivo. Stem Cell Rep 2018;10:751–65.
CrossRef
Google scholar
|
/
〈 | 〉 |