Genetic effects of historical anthropogenic disturbance on a long-lived endangered tropical tree Vatica mangachapoi

Zhicong Dai , Chuncan Si , Deli Zhai , Ping Huang , Shanshan Qi , Ying Lin , Ruiping Wang , Qiongxin Zhong , Daolin Du

Journal of Forestry Research ›› 2017, Vol. 29 ›› Issue (2) : 291 -299.

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Journal of Forestry Research ›› 2017, Vol. 29 ›› Issue (2) : 291 -299. DOI: 10.1007/s11676-017-0470-z
Original Paper

Genetic effects of historical anthropogenic disturbance on a long-lived endangered tropical tree Vatica mangachapoi

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Abstract

The endangered Vatica mangachapoi, a long-lived, tropical tree with economic and ecological importance found in Hainan, China, was used to assess the hypothesis that historical human activities in Hainan’s tropical rain forest could have negative effects on the genetic diversity of V. mangachapoi. Three hundred and twenty individuals from 11 natural populations—which were classified into three groups according to levels of disturbance—were sampled and analyzed with ISSR markers. Although genetic diversity of V. mangachapoi is high at the species level, it is relatively low within populations. A significant genetic differentiation occurs among different disturbance levels. Significant isolation-by-distance indicated relevant historical anthropogenic changes. Our findings showed that historical human disturbances significantly increase the genetic differentiation and slightly decrease the genetic diversity of long-lived tree V. mangachapoi. Relevant targeting conservation actions were recommended.

Keywords

Endangered plant / Genetic variability / Human disturbance / Tropical forest / Vatica mangachapoi

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Zhicong Dai, Chuncan Si, Deli Zhai, Ping Huang, Shanshan Qi, Ying Lin, Ruiping Wang, Qiongxin Zhong, Daolin Du. Genetic effects of historical anthropogenic disturbance on a long-lived endangered tropical tree Vatica mangachapoi. Journal of Forestry Research, 2017, 29(2): 291-299 DOI:10.1007/s11676-017-0470-z

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References

[1]

Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J. Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Mol Ecol, 2008, 17: 5177-5188.

[2]

Ashton P (1998) Vatica mangachapoi. IUCN red list of threatened species. Version 2010.2. (http://www.iucnredlist.org/): International Union for Conservation of Nature and Natural Resources (IUCN)

[3]

Bittencourt JV, Sebbenn AM. Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern Brazil. Heredity, 2007, 99: 580-591.

[4]

Breinholt JW, Van Buren R, Kopp OR, Stephen CL. Population genetic structure of an endangered Utah endemic, Astragalus ampullarioides (Fabaceae). Am J Bot, 2009, 96: 661-667.

[5]

Bunyavejchewin S, LaFrankie JV, Baker PJ, Kanzaki M, Ashton PS, Yamakura T. Spatial distribution patterns of the dominant canopy dipterocarp species in a seasonal dry evergreen forest in western Thailand. For Ecol Manag, 2003, 175: 87-101.

[6]

Chen HY. Flora of Hainan, 1964, Beijing: Science Press 516 517 (in Chinese)

[7]

Dai ZC, Zhong QX, Si CC, Lin Y, Wang KR, Zhang B, Du DL. A review of study on endangered mechanism and conservation ecology of endangered Vatica mangachapoi. J Hainan Normal University (Natural Science), 2008, 21: 82-86. (in Chinese with English abstract)

[8]

Dai ZC, Si CC, Zhai DL, Huang P, Qi SS, Zhong QX, Hu X, Li HM, Du DL. Human impacts on genetic diversity and differentiation in six natural populations of Madhuca hainanensis, an endemic and endangered timber species in China. Biochem Syst Ecol, 2013, 50: 212-219.

[9]

Dai ZC, Qi SS, Miao SL, Liu YT, Tian YF, Zhai DL, Huang P, Du DL. Isolation of NBS-LRR RGAs from invasive Wedelia trilobata and the calculation of evolutionary rates to understand bioinvasion from a molecular evolution perspective. Biochem Syst Ecol, 2015, 61: 19-27.

[10]

Ding Y, Zang RG, Jiang Y-X. Effect of hillslope gradient on vegetation recovery on abandoned land of shifting cultivation in Hainan Island, South China. J Integr Plant Biol, 2006, 48: 642-653.

[11]

Fatemi M, Gross CL. Life on the edge—high levels of genetic diversity in a cliff population of Bertya ingramii are attributed to B. rosmarinifolia (Euphorbiaceae). Biol Conserv, 2009, 142: 1461-1468.

[12]

Feyissa T, Nybom H, Bartish I, Welander M. Analysis of genetic diversity in the endangered tropical tree species Hagenia abyssinica using ISSR markers. Genet Resour Crop Evol, 2007, 54: 947-958.

[13]

Gaino APSC, Silva AM, Moraes MA, Alves PF, Moraes MLT, Freitas MLM, Sebbenn AM. Understanding the effects of isolation on seed and pollen flow, spatial genetic structure and effective population size of the dioecious tropical tree species Myracrodruon urundeuva. Conserv Genet, 2010, 11: 1631-1643.

[14]

Hamrick JL, Godt MJW, Sherman-Broyles SL. Factors influencing levels of genetic diversity in woody plant species. New For, 1992, 6: 95-124.

[15]

Herrera JM, Garcia D. Effects of forest fragmentation on seed dispersal and seedling establishment in Ornithochorous trees. Conserv Biol, 2010, 24: 1089-1098.

[16]

Jump AS, Marchant R, Penuelas J. Environmental change and the option value of genetic diversity. Trends Plant Sci, 2009, 14: 51-58.

[17]

Lewontin RC. The apportionment of human diversity. Evol Biol, 1972, 6: 381-398.

[18]

Li JM, Jin ZX. Genetic structure of endangered Emmenopterys henryi Oliv. based on ISSR polymorphism and implications for its conservation. Genetica, 2008, 133: 227-234.

[19]

Lopez-Pujol J, Zhang FM, Ge S. Plant biodiversity in China: richly varied, endangered, and in need of conservation. Biodivers Conserv, 2006, 15: 3983-4026.

[20]

Luo S, He Y, Ning G, Zhang J, Ma G, Bao M. Genetic diversity and genetic structure of different populations of the endangered species Davidia involucrata in China detected by inter-simple sequence repeat analysis. Trees Struct Funct, 2011, 25: 1063-1071.

[21]

Manohara TN, Linto EL, Renuka C. Diversity and conservation of palms in Andaman and Nicobar archipelago. Biodivers Conserv, 2010, 19: 3655-3666.

[22]

Matesanz S, Gimeno TE, de la Cruz M, Escudero A, Valladares F. Competition may explain the fine-scale spatial patterns and genetic structure of two co-occurring plant congeners. J Ecol, 2011, 99: 838-848.

[23]

Mayer AL, Kauppi PE, Angelstam PK, Zhang Y, Tikka PM. Importing timber, exporting ecological impact. Science, 2005, 308: 359-360.

[24]

McDermott JM, McDonald BA. Gene flow in plant pathosystems. Annu Rev Phytopathol, 1993, 31: 353-373.

[25]

Nei M. Genetic distance between populations. Am Nat, 1972, 106: 283-292.

[26]

Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA, 1973, 70: 3321-3323.

[27]

Nybom H. Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol, 2004, 13: 1143-1155.

[28]

Peakall ROD, Smouse PE. Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes, 2006, 6: 288-295.

[29]

Rucinska A, Puchalski J. Comparative molecular studies on the genetic diversity of an ex situ garden collection and its source population of the critically endangered polish endemic plant Cochlearia polonica E. Frohlich. Biodivers Conserv, 2011, 20: 401-413.

[30]

SAS Institute Inc (2004) SAS/STAT user’s guide. Version 9.1. SAS Institute Inc., Cary

[31]

Schemske DW, Husband BC, Ruckelshaus MH, Goodwillie C, Parker IM, Bishop JG. Evaluating approaches to the conservation of care and endangered plants. Ecology, 1994, 75: 584-606.

[32]

Shi L, Zhao S, Tang Z, Fang J. The changes in china’s forests: an analysis using the forest identity. PLoS ONE, 2011, 6: e20778.

[33]

Sist P, Fimbel R, Sheil D, Nasi R, Chevallier MH. Towards sustainable management of mixed dipterocarp forests of South-east Asia: moving beyond minimum diameter cutting limits. Environ Conserv, 2003, 30: 364-374.

[34]

State Forestry Administration PR, China. List of National key protected wild plants (1st Part), 1999, Beijing: State Forestry Administration (in Chinese)

[35]

Stewart CN Jr, Via L. A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques, 1993, 14: 748-750.

[36]

Wang W, Pechacek P, Zhang M, Xiao N, Zhu J, Li J. Effectiveness of nature reserve system for conserving tropical forests: a statistical evaluation of Hainan Island, China. PLoS ONE, 2013, 8: e57561.

[37]

Yeh F, Boyle T, Rongcai Yang, Ye Z, Xian JM (1999) POPGENE 32, Microsoft windows-based freeware for population genetic analysis, version 1.32. University of Alberta, Edmonton

[38]

Zhai DL, Cannon CH, Slik JWF, Zhang CP, Dai ZC. Rubber and pulp plantations represent a double threat to Hainan’s natural tropical forests. J Environ Manag, 2012, 96: 64-73.

[39]

Zhai DL, Xu JC, Dai ZC, Cannon CH, Grumbine RE. Increasing tree cover while losing diverse natural forests in tropical Hainan, China. Reg Environ Change, 2014, 14: 611-621.

[40]

Zhang YQ, Uusivuori J, Kuuluvainen J. Econometric analysis of the causes of forest land use changes in Hainan, China. Can J For Res, 2000, 30: 1913-1921.

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