Population and community ecology as a science are about 100 years old, and we discuss here our opinion of what approaches have progressed well and which point to possible future directions. The three major threads within population and community ecology are theoretical ecology, statistical tests and models, and experimental ecology. We suggest that our major objective is to understand what factors determine the distribution and abundance of organisms within populations and communities, and we evaluate these threads against this major objective. Theoretical ecology is elegant and compelling and has laid the groundwork for achieving our overall objectives with useful simple models. Statistics and statistical models have contributed informative methods to analyze quantitatively our understanding of distribution and abundance for future research. Population ecology is difficult to carry out in the field, even though we may have all the statistical methods and models needed to achieve results. Community ecology is growing rapidly with much description but less understanding of why changes occur. Biodiversity science cuts across all these subdivisions but rarely digs into the necessary population and community science that might solve conservation problems. Climate change affects all aspects of ecology but to assume that everything in population and community ecology is driven by climate change is oversimplified. We make recommendations on how to advance the field with advice for present and future generations of population and community ecologists.
Age and growth-related data are basic biological parameters, essential in population ecology, evolution, and conservation biology. There is a growing body of published information on reptile demography derived from sclerochronology, a technique based on counting the growth layers deposited in bones (skeletochronology) and other hard body structures. Since the data are not always easily available, we compiled the existing published data, described the current status of knowledge, synthetized the conclusions of disparate studies, and identified patterns of research and information gaps, prioritizing the needs for future research. Our database includes the results of 468 published studies covering 236 reptile species from 41 families. These represent less than 2% of the total number of known extant species. Turtles and crocodiles are proportionally better studied, while snakes are the least examined group. The distribution of the research does not reflect conservation needs; we found an important geographic bias, with an overrepresentation of Northern temperate species. Only 23% of the studies checked the assumption of periodicity of growth marks deposition, and the method was found to be reliable or adequate in 79% of the cases. Overall, the data obtained through sclerochronology can be considered robust, especially if validation methods are employed, since the general goal is to characterize population parameters, trends, and dynamics, rather than determining the exact age of any specimen in particular.
How many species of life are there on Earth? This is a question that we want to know but cannot yet answer. Some scholars speculate that the number of species may reach 2.2 billion when considering cryptic diversity and that each morphology-based insect species may contain an average of 3.1 cryptic species. With nearly two million described species, such high estimates of cryptic diversity would suggest that cryptic species are widespread. The development of molecular species delimitation has led to the discovery of a large number of cryptic species, and cryptic biodiversity has gradually entered our field of vision and attracted more attention. This paper introduces the concept of cryptic species, how they evolve, and methods by which they may be discovered and confirmed, and provides theoretical and methodological guidance for the study of hidden species. A workflow of how to confirm cryptic species is provided. In addition, the importance and reliability of multi-evidence-based integrated taxonomy are reaffirmed as a way to better standardize decision-making processes. Special focus on cryptic diversity and increased funding for taxonomy is needed to ensure that cryptic species in hyperdiverse groups are discoverable and described. An increased focus on cryptic species in the future will naturally arise as more difficult groups are studied, and thereby, we may finally better understand the rules governing the evolution and maintenance of cryptic biodiversity.
Beak deformation, known as avian keratin disorder (AKD), can impair feeding and preening of birds, reducing their survival. This disorder is apparently caused by Poecivirus infection, although to date, the viral origin has been corroborated in only a few North American bird species. Considering that fruit-eating birds can track spatiotemporal variations in fruit abundance and that AKD may have a viral origin, the incidence of this disease can be expected to increase with flocking by birds. Therefore, we evaluated if austral thrushes (Turdus falcklandii) were attracted to urban areas when exotic plants offered fruits and if flocking of thrushes in urban areas increased the spread of AKD in this species in a Patagonian town. We fitted GPS loggers on some individuals with normal beaks in rural areas and found that they visit the town in fall. Through point count censuses, we recorded greater abundances of thrushes with normal and deformed beaks during fall–winter in urban sites than in rural sites. However, the abundance of birds with AKD declined more (78–87%) than that of individuals with normal beaks (44–52%) during the transition from fall–winter to spring–summer. In urban zones in our study area, fruits of exotic species ripen during fall, attracting austral thrushes from rural sites. Nevertheless, such an attraction for food resources may be an ecological trap for this species, as the increase in incidence of AKD in urban areas may drastically reduce the survival of birds during the most unfavorable period of the year.
Urbanization-driven biotic homogenization has been recorded in various ecosystems on local and global scales; however, it is largely unexplored in developing countries. Empirical studies on different taxa and bioregions show conflicting results (i.e. biotic homogenization vs. biotic differentiation); the extent to which the community composition changes in response to anthropogenic disturbances and the factors governing this process, therefore, require elucidation. Here, we used a compiled database of 760 bird species in China to quantify the multiple-site β-diversity and fitted distance decay in pairwise β-diversities between natural and urban assemblages to assess whether urbanization had driven biotic homogenization. We used generalized dissimilarity models (GDM) to elucidate the roles of spatial and environmental factors in avian community dissimilarities before and after urbanization. The multiple-site β-diversities among urban assemblages were markedly lower than those among natural assemblages, and the distance decays in pairwise similarities in natural assemblages were more rapid. These results were consistent among taxonomic, phylogenetic, and functional aspects, supporting a general biotic homogenization driven by urbanization. The GDM results indicated that geographical distance and temperature were the dominant predictors of avian community dissimilarity. However, the contribution of geographical distance and climatic factors decreased in explaining compositional dissimilarities in urban assemblages. Geographical and environmental distances accounted for much lower variations in compositional dissimilarities in urban than in natural assemblages, implying a potential risk of uncertainty in model predictions under further climate change and anthropogenic disturbances. Our study concludes that taxonomic, phylogenetic, and functional dimensions elucidate urbanization-driven biotic homogenization in China.
Porcupines, members of the Hystricidae family, represent a unique group of herbivorous mammals. This study details the identification of a newly discovered mandible fragment of Hystrix primigenia, along with a right cheek tooth series from the middle Turolian Kemiklitepe-A fossil locality. While Hystrix fossils are found in numerous localities, the materials are often limited to a few dental fragments or isolated teeth, posing challenges to systematic investigations. The examination of this lower tooth series prompted a comprehensive review of all H. primigenia findings across Eurasia, shedding light on its adaptive characteristics over time and space. Our paleobiogeographical analysis indicates the absence of H. depereti in Late Miocene Türkiye, while the dispersal range of H. primigenia is broader than that of H. depereti in Eurasia. Additionally, the study delves into the discussion of H. primigenia and H. depereti findings in Eurasia, ultimately refining the categorization of Late Miocene Hystrix discoveries in Türkiye to two species: H. primigenia and H. kayae. Our review suggests the possibility of an additional H. kayae finding from Samos, Greece.
Limited aerobic scope (AS) during digestion might be the main constraint on the performance of bodily functions in water-breathing animals. Thus, investigating the postprandial changes in various physiological functions and determining the existence of a shared common pattern because of possible dependence on residual AS during digestion in freshwater fish species are very important in conservation physiology. All species from slow-flow habitats showed impaired swimming speed while digesting, whereas all species from fast-flow habitats showed strong swimming performance, which was unchanged while digesting. Only two species from slow-flow habitats showed impaired heat tolerance during digestion, suggesting that whether oxygen limitation is involved in the heat tolerance process is species-specific. Three species from slow- or intermediate-flow habitats showed impaired hypoxia tolerance during digestion because feeding metabolism cannot cease completely under hypoxia. Overall, there was no common pattern in postprandial changes in different physiological functions because: (1) the digestion process was suppressed under oxygen-limiting conditions, (2) the residual AS decreased during digestion, and (3) performance was related to residual AS, while digestion was context-dependent and species-specific. However, digestion generally showed a stronger effect on bodily functions in species from slow-flow habitats, whereas it showed no impairment in fishes from fast-flow habitats. Nevertheless, the postprandial change in physiological functions varies with habitat, possibly due to divergent selective pressure on such functions. More importantly, the present study suggests that a precise prediction of how freshwater fish populations will respond to global climate change needs to incorporate data from postprandial fishes.
Traditional Dipodomys (sub)species identification uses geography, phenotype, and external/skull measurements. Such measurements are correlated with size and thus redundant. I assessed the value of scaled cranial shape, based on two-dimensional landmarks (analyzed using geometric morphometric methods) in distinguishing Dipodomys taxa, and in summarizing their variation. My dataset includes 601 adult specimens from 20 species (49 operational taxonomic units - OTUs) across 190 localities. Cranial shape was highly useful in classifying Dipodomys taxa without considering geography. The auditory bulla was the most variable region—taxa differed in its hypertrophy, accompanied by different degrees of nearby structure crowding. Cranial shape was weakly allometric, with no significant sexual dimorphism. Weak size dimorphism was detected. (Sub)specific taxonomy is not reflective of shape variation, as the number of subspecies per species is not associated with disparity. Shape had significant phylogenetic signal, but subspecies did not always cluster with conspecifics and species did not always cluster according to phylogenetic relationship/taxonomy. Shape variation was correlated with climate, and species differed in morphological disparity and degree of specialization, which may contribute to divergence in shape variation patterns from phylogeny. D. deserti was the most specialized species, diverging greatly from the genus mean; D. heermanni was the least specialized. This study provides new insights into morphological variation of North American keystone species, several of conservation interest, for example,D. heermanni berkeleyensis,D. h. dixoni,D. nitratoides brevinasus, and D. n. nitratoides.
Scatter-hoarding rodents play important roles in plant regeneration and species coexistence in many forest ecosystems. Cache pilferage, the behavior of rodents seeking or relocating seeds cached by other individuals, is ubiquitous during the scatter-hoarding process. The effects of canopy openness on cache pilferage have received considerable attention, most of which have focused on the comparison between full canopy cover and completely open areas, such as forest gaps. However, little attention has been given to whether the subtle variation in forest canopy openness affects cache pilferage, although subtle variation in light environments exists in many forests, especially tropical and subtropical forests, where the overall canopy is large and the forest window is relatively small. Here, we directly tested these questions by simulating 400 artificial caches, each containing one seed from four selected tree species, in a subtropical forest in southwestern China. The overall canopy openness of the forest was relatively small (with a mean value of 11.1%), but subtle spatial variation still existed (ranging from 5.7% to 19.5%). Overall, caches with lower canopy openness were more likely to be pilfered and removed faster, although not all species showed the same pattern. Our study highlights that subtle variation in forest canopy openness, even in a closed primary forest, has significant effects on cache pilferage by rodents, which may influence the following seed germination and forest regeneration processes. Additionally, seedling species composition may further be altered because the canopy effects on cache pilferage are species-specific.
Amid coevolutionary arms races between brood parasitic birds and their diverse host species, the formation of host-specific races, or gentes, has drawn significant research focus. Nevertheless, numerous questions about gentes evolutionary patterns persist. Here, we investigated the potential for gentes evolution across multiple common cuckoo (Cuculus canorus) populations parasitizing diverse host species in China. Using maternal (mitochondrial and W-linked DNA) and biparental (autosomal and Z-linked DNA) markers, we found consistent clustering of cuckoo gentes (rather than geographical populations) into distinct clades in matrilineal gene trees, indicating robust differentiation. In contrast, biparental markers indicated intermixing of all gentes, suggesting asymmetric gene flow regardless of geography. Unlike the mitonuclear discordance commonly resulting from incomplete lineage sorting, adaptive introgression, or demographic disparities, the observed pattern in brood parasitic cuckoos might reflect biased host preferences between sexes. We hereby present the “Isolation by Gentes with Asymmetric Migration” model. According to this model, the maternal line differentiation of the common cuckoo in China is potentially driven by host preferences in females, whereas males maintained the integrity of the cuckoo species through random mating. To achieve this, cuckoo males could perform flexible migration among gentes or engage in early copulation with females before reaching the breeding sites, allowing female cuckoos to store sperm from various gentes. Future studies collecting additional samples from diverse cuckoo gentes with overlapping distribution and investigating the migratory and copulation patterns of each sex would enhance our understanding of sex-biased differentiation among cuckoo populations in China.
Natural native forests are rapidly being replaced by anthropogenic forests often with a strong presence of invasive alien plant species. Eucalypt species are widely planted worldwide, with Eucalyptus globulus plantations being particularly expressive in Portugal. Poor forestry practices often lead to the associated expansion of invasive species, such as Acacia dealbata. However, we still know relatively little about the functioning of anthropogenic forests, such as seed and pollen dispersal services. Here, we compared bird abundance and richness and the seed and pollen dispersal networks in both forest types. Anthropogenic forests presented lower bird abundance, and smaller, more simplified, and more random (abundance-based) seed dispersal services than those of natural forests. Interestingly, the pollen dispersal network was more similar than the seed dispersal network for both forest types and dominated by opportunistic and neutral processes, given the absence of specialized nectarivorous. The proportion of birds transporting seeds decreased, while those carrying pollen significantly increased in the anthropogenic forest compared to the native forest. Our work highlights the impact of anthropogenic forests on bird abundance, with consequences for seed dispersal services and forest regeneration.
Reproduction by perennial plants varies from being relatively constant over years to the production of massive and synchronous seed crops at irregular intervals, a reproductive strategy called mast seeding. The sources of interspecific differences in the extent of interannual variation in seed production are largely unknown. We conducted a global meta-analysis of animal-dispersed species to quantify how the interannual variability in seed crops produced by plants can be explained by the seed mass, dispersal mode, phylogeny, and climate. Phylogenetic analysis indicated that the interannual variations in seed production and seed mass tended to be similar in related species due to their shared evolution. The interannual variation in seed production was 1.22 times higher in synzoochorous species dispersed by scatter-hoarders compared with endozoochorous species dispersed by frugivores. Furthermore, the production of small seeds was associated with higher interannual variation in seed production, although synzoochorous species produced larger seeds than endozoochorous species. Precipitation rather than temperature had a significant positive effect on the interannual variation in seed production. The seed mass and dispersal mode contributed more to the interannual variation in seed production than phylogeny, climate, and fruit type. Our findings support a long-standing hypothesis that interspecific variation in the masting intensity is largely shaped by interactions between plants and animals.
In this study we aimed to assess the role of wild red deer, along with other ungulates such as roe deer and wild boar, in the soil’s physical properties, namely soil penetration resistance and depth (used as a proxy for soil compaction), hydraulic conductivity (a proxy for water infiltration), and the proportion of soil stable aggregates. Results showed that, at the density level found in our study area, red deer have a neutral effect at the soil level, not causing significant soil compaction or significantly influencing measured soil functions.