Hurricane Impacts on the Population Genetics of an Endangered Ecosystem Engineer

Taylor Ackley , Martha Burford Reiskind , Emily C. Moore , Jeremy D. Dixon , Michael V. Cove , Elizabeth M. Kierepka

Integrative Conservation ›› 2025, Vol. 4 ›› Issue (4) : 641 -651.

PDF
Integrative Conservation ›› 2025, Vol. 4 ›› Issue (4) :641 -651. DOI: 10.1002/inc3.70054
RESEARCH ARTICLE
Hurricane Impacts on the Population Genetics of an Endangered Ecosystem Engineer
Author information +
History +
PDF

Abstract

Stochastic events such as hurricanes can influence the survival and consequently distribution and abundance of various taxa. The Key Largo woodrat (Neotoma floridana smalli) is an endangered subspecies and an ecosystem engineer endemic to its namesake island in the Florida Keys that has evolved with regular hurricane disturbances. Yet, climate change has led to more frequent and stronger storms which could exacerbate the immediate threat to these rodents since their population is already limited in distribution and threatened by invasive predators. Therefore, understanding how the woodrat population responds to such events can provide important information for future conservation efforts. To assess how the Key Largo woodrat population responded to a major hurricane, we estimated genetic diversity, effective population size, and spatial genetic structure before and after Hurricane Irma—a Category 4 storm that made landfall in the Keys in 2017. Despite overall low genetic diversity and effective population size pre- and post-Hurricane Irma, we observed increases in both metrics post-hurricane as well as shifts in spatial genetic structure. These results indicate that flooding from the hurricane likely drove a mixing of family groups as woodrats took refuge in trees and stick-nests and then likely sought alternative green-up resources following the storm. As climate change drives more intense storms and rising sea levels, these adaptive behaviors will become more important for the persistence of this fragile island population.

Keywords

endangered / genetic diversity / hurricane / Key Largo / Neotoma floridana smalli / Neotoma floridana smalli

Cite this article

Download citation ▾
Taylor Ackley, Martha Burford Reiskind, Emily C. Moore, Jeremy D. Dixon, Michael V. Cove, Elizabeth M. Kierepka. Hurricane Impacts on the Population Genetics of an Endangered Ecosystem Engineer. Integrative Conservation, 2025, 4(4): 641-651 DOI:10.1002/inc3.70054

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Abernathy, H. N., D. A. Crawford, E. P. Garrison, et al. 2019. “Deer Movement and Resource Selection During Hurricane Irma: Implications for Extreme Climatic Events and Wildlife.” Proceedings. Biological sciences 286, no. 1916: 20192230. https://doi.org/10.1098/rspb.2019.2230.

[2]

Adamack, A. T., and B. Gruber. 2014. “Popgenreport: Simplifying Basic Population Genetic Analyses in R.” Methods in Ecology and Evolution 5, no. 4: 384–387. https://doi.org/10.1111/2041-210X.12158.

[3]

Allendorf, F. W., W. C. Funk, S. N. Aitken, M. Byrne, and G. Luikart, Conservation and the Genomics of Populations, 3rd ed., 2022, Evolutionary Applications, Wiley Online Library.

[4]

Benjamini, Y., and D. Yekutieli. 2005. “False Discovery Rate–Adjusted Multiple Confidence Intervals for Selected Parameters.” Journal of the American Statistical Association 100, no. 469: 71–81. https://doi.org/10.1198/016214504000001907.

[5]

Castleberry, S. B., T. L. King, P. B. Wood, and W. M. Ford. 2002. “Microsatellite Dna Analysis of Population Structure in Allegheny Woodrats (Neotoma magister).” Journal of Mammalogy 83, no. 4: 1058–1070. https://doi.org/10.1644/1545-1542(2002)083<1058:MDAOPS>2.0.CO;2.

[6]

Cove, M. V., S. L. Dietz, C. T. Anderson, A. M. Jenkins, K. R. Hooker, and M. J. Kaeser. 2024. “Endangered Beach Mouse Resistance to a Category 5 Hurricane Is Mediated by Elevation and Dune Habitat.” Integrative Conservation 3, no. 1: 36–45. https://doi.org/10.1002/inc3.42.

[7]

Cove, M. V., T. R. Simons, B. Gardner, A. S. Maurer, and A. F. O'Connell. 2017. “Evaluating Nest Supplementation as a Recovery Strategy for the Endangered Rodents of the Florida Keys.” Restoration Ecology 25, no. 2: 253–260. https://doi.org/10.1111/rec.12418.

[8]

Cove, M. V., T. R. Simons, B. Gardner, and A. F. O'Connell. 2019. “Towards Recovery of An Endangered Island Endemic: Distributional and Behavioral Responses of Key Largo Woodrats Associated With Exotic Predator Removal.” Biological Conservation 237: 423–429. https://doi.org/10.1016/j.biocon.2019.07.032.

[9]

Do, C., R. S. Waples, D. Peel, G. M. Macbeth, B. J. Tillett, and J. R. Ovenden. 2014. “Neestimator v2: Re-Implementation of Software for the Estimation of Contemporary Effective Population Size (Ne) From Genetic Data.” Molecular Ecology Resources 14, no. 1: 209–214. https://doi.org/10.1111/1755-0998.12157.

[10]

Fernández-Palacios, J. M., H. Kreft, S. Irl, et al. 2021. “Scientists' Warning —The Outstanding Biodiversity of Islands Is in Peril.” Global Ecology and Conservation 31: e01847. https://doi.org/10.1016/j.gecco.2021.e01847.

[11]

Frankham, R. 1998. “Inbreeding and Extinction: Island Populations.” Conservation Biology 12, no. 3: 665–675. https://doi.org/10.1111/j.1523-1739.1998.96456.x.

[12]

Frankham, R., C. J. A. Bradshaw, and B. W. Brook. 2014. “Genetics in Conservation Management: Revised Recommendations for the 50/500 Rules, Red List Criteria and Population Viability Analyses.” Biological Conservation 170: 56–63. https://doi.org/10.1016/j.biocon.2013.12.036.

[13]

Franklin, I. R. 1980. “ Evolutionary Change in Small Populations.” In Conservation Biology: An Evolutionary Ecological Perspective, edited by M. E. Soule and B. A. Wilcox, 135–140. Sinauer Associates.

[14]

Gottelli, D., C. Sillero-zubiri, G. D. Applebaum, et al. 1994. “Molecular Genetics of the Most Endangered Canid: The Ethiopian Wolf Canis simensis.” Molecular Ecology 3, no. 4: 301–312. https://doi.org/10.1111/j.1365-294x.1994.tb00070.x.

[15]

Greene, D. U., M. T. Mengak, S. B. Castleberry, S. Sneckenberger, and J. A. Gore. 2021. “Effects of Flooding on the Endangered Key Largo Cotton Mouse (Peromyscus gossypinus Allapaticola) in Florida.” Southeastern Naturalist 20, no. 2: N65–N68. https://doi.org/10.1656/058.020.0216.

[16]

Hagemann, L., M. Arandjelovic, M. M. Robbins, et al. 2019. “Long-Term Inference of Population Size and Habitat Use in a Socially Dynamic Population of Wild Western Lowland Gorillas.” Conservation Genetics 20, no. 6: 1303–1314. https://doi.org/10.1007/s10592-019-01209-w.

[17]

Humphrey, S. R. 1988. “Density Estimates of the Endangered Key Largo Woodrat and Cotton Mouse (Neotoma floridana Smalli and Peromyscus gossypinus Allapaticola), Using the Nested-Grid Approach.” Journal of Mammalogy 69, no. 3: 524–531. https://doi.org/10.2307/1381344.

[18]

Jombart, T. 2008. “Adegenet: A R Package for the Multivariate Analysis of Genetic Markers.” Bioinformatics 24, no. 11: 1403–1405. https://doi.org/10.1093/bioinformatics/btn129.

[19]

Kearse, M., R. Moir, A. Wilson, et al. 2012. “Geneious Basic: An Integrated and Extendable Desktop Software Platform for the Organization and Analysis of Sequence Data.” Bioinformatics 28, no. 12: 1647–1649. https://doi.org/10.1093/bioinformatics/bts199.

[20]

Keenan, K., P. McGinnity, T. F. Cross, W. W. Crozier, and P. A. Prodöhl. 2013. “Diversity: An R Package for the Estimation and Exploration of Population Genetics Parameters and Their Associated Errors.” Methods in Ecology and Evolution 4, no. 8: 782–788. https://doi.org/10.1111/2041-210X.12067.

[21]

Kierepka, E. M., J. C. Kilgo, and O. E. Rhodes. 2017. “Effect of Compensatory Immigration on the Genetic Structure of Coyotes.” Journal of Wildlife Management 81, no. 8: 1394–1407. https://doi.org/10.1002/jwmg.21320.

[22]

Marsooli, R., N. Lin, K. Emanuel, and K. Feng. 2019. “Climate Change Exacerbates Hurricane Flood Hazards Along US Atlantic and Gulf Coasts in Spatially Varying Patterns.” Nature Communications 10, no. 1: 3785. https://doi.org/10.1038/s41467-019-11755-z.

[23]

Martínez-Ruiz, M., and K. Renton. 2018. “Habitat Heterogeneity Facilitates Resilience of Diurnal Raptor Communities to Hurricane Disturbance.” Forest Ecology and Management 426: 134–144. https://doi.org/10.1016/j.foreco.2017.08.004.

[24]

McCleery, R., J. A. Hostetler, and M. K. Oli. 2014. “Better Off in the Wild? Evaluating a Captive Breeding and Release Program for the Recovery of an Endangered Rodent.” Biological Conservation 169: 198–205. https://doi.org/10.1016/j.biocon.2013.11.026.

[25]

McCleery, R. A., R. R. Lopez, and N. J. Silvy. 2006. “Movements and Habitat Use of the Key Largo Woodrat.” Southeastern Naturalist 5, no. 4: 725–736.

[26]

McDonald, B. W., C. Baruzzi, R. A. McCleery, M. V. Cove, and M. A. Lashley. 2023. “Simulated Extreme Climate Event Alters a Plant-Frugivore Mutualism.” Forest Ecology and Management 545: 121294. https://doi.org/10.1016/j.foreco.2023.121294.

[27]

Van Oosterhout, C., W. F. Hutchinson, D. P. M. Wills, and P. Shipley. 2004. “Micro-Checker: Software for Identifying and Correcting Genotyping Errors in Microsatellite Data.” Molecular Ecology Notes 4, no. 3: 535–538. https://doi.org/10.1111/j.1471-8286.2004.00684.x.

[28]

Pagán, J. A., A. Veríssimo, P. C. Sikkel, and R. Xavier. 2020. “Hurricane-Induced Disturbance Increases Genetic Diversity and Population Admixture of the Direct-Brooding Isopod, Gnathia marleyi.” Scientific Reports 10, no. 1: 8649. https://doi.org/10.1038/s41598-020-64779-7.

[29]

Peakall, R., and P. E. Smouse. 2012. “Genalex 6.5: Genetic Analysis in Excel. Population Genetic Software for Teaching and Research—An Update.” Bioinformatics 28, no. 19: 2537–2539. https://doi.org/10.1093/bioinformatics/bts460.

[30]

Potts, J. M., S. T. Buckland, L. Thomas, and A. Savage. 2016. “Estimating Key Largo Woodrat Abundance Using Spatially Explicit Capture–Recapture and Trapping Point Transects.” Wildlife Society Bulletin 40, no. 2: 331–338. https://doi.org/10.1002/wsb.651.

[31]

Radabaugh, K. R., R. P. Moyer, A. R. Chappel, et al. 2020. “Mangrove Damage, Delayed Mortality, and Early Recovery Following Hurricane Irma at Two Landfall Sites in Southwest Florida, USA.” Estuaries and Coasts 43, no. 5: 1104–1118. https://doi.org/10.1007/s12237-019-00564-8.

[32]

Redinger, J., I. Lord, J. Dixon, and M. V. Cove. 2024. “Mammal Declines Correspond With Increasing Prevalence of Burmese Pythons at Their Southern Invasion Front in the Florida Keys.” Biological Invasions 26, no. 3: 889–903. https://doi.org/10.1007/s10530-023-03217-x.

[33]

Sasso, C. R., and M. S. Gaines. 2002. “Population Ecology of Three Species of Small Mammals on Key Largo, Florida.” Florida Scientist 65, no. 2: 115–125.

[34]

Shiels, A. B., G. E. Ramírez de Arellano, and L. Shiels. 2022. “Invasive Rodent Responses to Experimental and Natural Hurricanes With Implications for Global Climate Change.” Ecosphere 13, no. 12: e4307. https://doi.org/10.1002/ecs2.4307.

[35]

Thoemmes, M. S., and M. V. Cove. 2020. “Bacterial Communities in the Natural and Supplemental Nests of an Endangered Ecosystem Engineer.” Ecosphere 11, no. 9: e03239. https://doi.org/10.1002/ecs2.3239.

[36]

Tomiczek, T., K. O'Donnell, K. Furman, B. Webbmartin, and S. Scyphers. 2020. “Rapid Damage Assessments of Shorelines and Structures in the Florida Keys After Hurricane Irma.” Natural Hazards Review 21, no. 1: 05019006. https://doi.org/10.1061/(ASCE)NH.1527-6996.0000349.

[37]

USFWS. 2018. Recovery Plan for the Endangered Key Largo woodrat (Neotoma floridana smalli).

[38]

Wang, S., W. Zhu, X. Gao, et al. 2014. “Population Size and Time Since Island Isolation Determine Genetic Diversity Loss in Insular Frog Populations.” Molecular Ecology 23, no. 3: 637–648. https://doi.org/10.1111/mec.12634.

[39]

Watersmith, E. C., B. McDonald, J. Dixon, and M. V. Cove. 2023. “Biodiversity Benefits of an Ecosystem Engineer Are Negated by an Invasive Predator.” Food Webs 35: e00286. https://doi.org/10.1016/j.fooweb.2023.e00286.

RIGHTS & PERMISSIONS

2025 The Author(s). Integrative Conservation published by John Wiley & Sons Australia, Ltd on behalf of Xishuangbanna Tropical Botanical Garden (XTBG).

PDF

4

Accesses

0

Citation

Detail

Sections
Recommended

/