KDM6B/Pdk1 glycolytic pathway-driven ZEB2 lactylation promotes cellular cementum formation

Zhengkun Yang , Huiyi Wang , Junhong Xiao , Qiudong Yang , Jiahui Sun , Heyu Liu , Zhendong Huang , Li Ma , Xin Huang , Chuan Wang , Xiaoxuan Wang , Zhengguo Cao

International Journal of Oral Science ›› 2026, Vol. 18 ›› Issue (1) : 21

PDF
International Journal of Oral Science ›› 2026, Vol. 18 ›› Issue (1) :21 DOI: 10.1038/s41368-025-00420-5
Article
research-article
KDM6B/Pdk1 glycolytic pathway-driven ZEB2 lactylation promotes cellular cementum formation
Author information +
History +
PDF

Abstract

Periodontitis is a common chronic inflammatory disease that ultimately results in irreversible tooth loss. Cementum, a bone-like tissue surrounding tooth roots, deteriorates as periodontitis advances, ultimately causing tooth loss. Therefore, cementum regeneration is considered a key factor in periodontal regeneration. Given the shared gene expression patterns and characteristics between cementum and bone, strategies for cementum regeneration may inform approaches for bone regeneration. Cementoblasts are responsible for cementum formation. This study identified lysine demethylase 6B (KDM6B) as a positive regulatory molecule that promotes cementoblast mineralization and formation. The seahorse assay revealed that KDM6B regulates glycometabolic reprogramming during cementoblast mineralization. Chromatin Immunoprecipitation (ChIP) sequencing and bulk RNA sequencing revealed that pyruvate dehydrogenase kinase 1 (PDK1), a crucial enzyme in glycolysis, is a direct target of KDM6B. Activation of the KDM6B-Pdk1 axis enhanced lactate production, driving lactylation of zinc finger E-box binding homeobox 2 (ZEB2). ZEB2 lactylation subsequently promotes cementoblast mineralization. Moreover, both in vitro and in vivo experiments showed that sodium lactate supplementation restores mineralization impaired by KDM6B suppression. In conclusion, our findings identify the KDM6B–Pdk1–ZEB2 lactylation axis as essential for cementogenesis, providing new insights for periodontal regeneration strategies.

Cite this article

Download citation ▾
Zhengkun Yang, Huiyi Wang, Junhong Xiao, Qiudong Yang, Jiahui Sun, Heyu Liu, Zhendong Huang, Li Ma, Xin Huang, Chuan Wang, Xiaoxuan Wang, Zhengguo Cao. KDM6B/Pdk1 glycolytic pathway-driven ZEB2 lactylation promotes cellular cementum formation. International Journal of Oral Science, 2026, 18(1): 21 DOI:10.1038/s41368-025-00420-5

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Zhao B, Zhang Y, Xiong Y, Xu X. Rutin promotes the formation and osteogenic differentiation of human periodontal ligament stem cell sheets in vitro. Int. J. Mol. Med.. 2019, 44: 2289-2297

[2]

Peng Xet al. . Oral microbiota in human systematic diseases. Int J. Oral. Sci.. 2022, 14: 14.

[3]

Huang Xet al. . Genetically engineered M2-like macrophage-derived exosomes for P. gingivalis-suppressed cementum regeneration: from mechanism to therapy. Bioact. Mater.. 2024, 32473-487

[4]

Zhang Let al. . Yes-associated protein promotes tumour necrosis factor α-treated cementoblast mineralization partly by inactivating the NF-κB pathway. J. Cell Mol. Med.. 2020, 24: 7939-7948.

[5]

Kaliman P. Epigenetics and meditation. Curr. Opin. Psychol.. 2019, 28: 76-80.

[6]

Yamauchi, Y., Shimizu, E. & Duncan, H.F. Dynamic alterations in acetylation and modulation of histone deacetylase expression evident in the dentine-pulp complex during dentinogenesis. Int. J. Mol. Sci.25, 6569 (2024).

[7]

Huang, X. et al. Sirt3 rescues porphyromonas gingivalis-impaired cementogenesis via SOD2 deacetylation. Cell Prolif. 58, e70022 https://doi.org/10.1111/cpr.70022 (2025).

[8]

Wang Yet al. . Branched-chain amino acid metabolic reprogramming orchestrates drug resistance to EGFR tyrosine kinase inhibitors. Cell Rep.. 2019, 28: 512-525.e6.

[9]

Wang Jet al. . Cell-type-dependent histone demethylase specificity promotes meiotic chromosome condensation in Arabidopsis. Nat. Plants. 2020, 6: 823-837.

[10]

Deng P. et al. Loss of KDM4B impairs osteogenic differentiation of OMSCs and promotes oral bone aging. Int. J. Oral Sci.14, 24 (2022).

[11]

Gu Ket al. . Sensory nerve regulation via H3K27 demethylation revealed in akermanite composite microspheres repairing maxillofacial bone defect. Adv. Sci.. 2024, 11. e2400242

[12]

Zhang Fet al. . Histone demethylase JMJD3 is required for osteoblast differentiation in mice. Sci. Rep.. 2015, 5. 13418

[13]

Francis Met al. . Histone methylation: Achilles heel and powerful mediator of periodontal homeostasis. J. Dent. Res. 2020, 99: 1332-1340.

[14]

Sterling J, Menezes SV, Abbassi RH, Munoz L. Histone lysine demethylases and their functions in cancer. Int J. Cancer. 2021, 148: 2375-2388.

[15]

Fets Let al. . MCT2 mediates concentration-dependent inhibition of glutamine metabolism by MOG. Nat. Chem. Biol.. 2018, 14: 1032-1042.

[16]

Cribbs APet al. . Histone H3K27me3 demethylases regulate human Th17 cell development and effector functions by impacting metabolism. Proc. Natl. Acad. Sci. USA. 2020, 117: 6056-6066.

[17]

Wang Het al. . Glycometabolic reprogramming in cementoblasts: a vital target for enhancing cell mineralization. FASEB J.. 2023, 37. e23241

[18]

Zhou Yet al. . Combined inhibition of pyruvate dehydrogenase kinase 1 and lactate dehydrogenase a induces metabolic and signaling reprogramming and enhances lung adenocarcinoma cell killing. Cancer Lett.. 2023, 577. 216425

[19]

Deng, A. et al. Innovative PDK1-degrading PROTACs transform cancer aerobic glycolysis and induce immunogenic cell death in breast cancer. Exploration e20240031 https://doi.org/10.1002/EXP.20240031 (2025).

[20]

Bai Yet al. . Conditional knockout of the PDK-1 gene in osteoblasts affects osteoblast differentiation and bone formation. J. Cell Physiol.. 2021, 236: 5432-5445.

[21]

Li Yet al. . Advances in the interaction of glycolytic reprogramming with lactylation. Biomed. Pharmacother.. 2024, 177. 116982

[22]

Brooks GA. The science and translation of the lactate shuttle theory. Cell Metab.. 2018, 27: 757-785.

[23]

Merkuri F, Rothstein M, Simoes-Costa M. Histone lactylation couples cellular metabolism with developmental gene regulatory networks. Nat. Commun.. 2024, 15. 90

[24]

Huang Yet al. . Lactylation stabilizes TFEB to elevate autophagy and lysosomal activity. J. Cell Biol.. 2024, 223. e202308099

[25]

Xiong Jet al. . Lactylation-driven METTL3-mediated RNA m6A modification promotes immunosuppression of tumor-infiltrating myeloid cells. Mol. Cell. 2022, 82: 1660-1677.e10.

[26]

Wu Y, Gong P. Scopolamine regulates the osteogenic differentiation of human periodontal ligament stem cells through lactylation modification of RUNX2 protein. Pharmacol. Res. Perspect.. 2024, 12: e1169.

[27]

Wu Yet al. . Proanthocyanidins ameliorate LPS-inhibited osteogenesis of PDLSCs by restoring lysine lactylation. Int J. Mol. Sci.. 2024, 252947.

[28]

Saitoh M. Transcriptional regulation of EMT transcription factors in cancer. Semin Cancer Biol.. 2023, 9721-29.

[29]

Hegarty SV, Sullivan AM, O’Keeffe GW. Zeb2: A multifunctional regulator of nervous system development. Prog. Neurobiol.. 2015, 132: 81-95.

[30]

Gómez Ret al. . DNA methylation analysis identifies key transcription factors involved in mesenchymal stem cell osteogenic differentiation. Biol. Res.. 2023, 56. 9

[31]

Li Met al. . CircRNA Lrp6 promotes cementoblast differentiation via miR-145a-5p/Zeb2 axis. J. Periodontal. Res.. 2021, 56: 1200-1212.

[32]

Han Net al. . Local application of IGFBP5 protein enhanced periodontal tissue regeneration via increasing the migration, cell proliferation and osteo/dentinogenic differentiation of mesenchymal stem cells in an inflammatory niche. Stem Cell Res Ther.. 2017, 8: 210.

[33]

Cao Zet al. . Genetic evidence for the vital function of Osterix in cementogenesis. J. Bone Miner. Res.. 2012, 271080.

[34]

Zhang Det al. . Metabolic regulation of gene expression by histone lactylation. Nature. 2019, 574575-580.

[35]

Yamamoto T, Hasegawa T, Yamamoto T, Hongo H, Amizuka N. Histology of human cementum: Its structure, function, and development. Jpn Dent. Sci. Rev.. 2016, 52: 63-74.

[36]

Yang D, Okamura H, Teramachi J, Haneji T. Histone demethylase Utx regulates differentiation and mineralization in osteoblasts. J. Cell Biochem. 2015, 116: 2628-2636.

[37]

Jiang H, Jia P. MiR-153-3p inhibits osteogenic differentiation of periodontal ligament stem cells through KDM6A-induced demethylation of H3K27me3. J. Periodontal. Res.. 2021, 56: 379-387.

[38]

Xu J, Yu B, Hong C, Wang C-Y. KDM6B epigenetically regulates odontogenic differentiation of dental mesenchymal stem cells. Int J. Oral. Sci.. 2013, 5: 200-205.

[39]

Liu Det al. . Demethylation of IGFBP5 by histone demethylase kdm6b promotes mesenchymal stem cell-mediated periodontal tissue regeneration by enhancing osteogenic differentiation and anti-inflammation potentials. Stem Cells. 2015, 33: 2523-2536.

[40]

Zhao N, Foster BL, Bonewald LF. The cementocyte—an osteocyte relative?. J. Dent. Res.. 2016, 95: 734-741.

[41]

Bosshardt DD. Are cementoblasts a subpopulation of osteoblasts or a unique phenotype?. J. Dent. Res.. 2005, 84: 390-406.

[42]

Tian Xet al. . The Mdm2-p53 axis links cementocyte survival to cellular cementum volume. J. Bone Min. Res.. 2025, 40: 548-560.

[43]

Sun Het al. . Sodium lactate promotes the stemness of human mesenchymal stem cells through KDM6B-mediated glycolytic metabolism. Biochem. Biophys. Res. Commun.. 2020, 532: 433-439.

[44]

Jiang Yet al. . KDM6B-mediated histone demethylation of LDHA promotes lung metastasis of osteosarcoma. Theranostics. 2021, 11: 3868-3881.

[45]

Yu J, Huang L, Cao L. M2 macrophages regulate KDM6B/PFKFB2 metabolic reprogramming of cervical squamous cell carcinoma through CXCL1. Cell Mol. Biol.. 2024, 70: 78-84.

[46]

Kim Jet al. . PDK4-mediated metabolic reprogramming is a potential therapeutic target for neovascular age-related macular degeneration. Cell Death Dis.. 2024, 15. 582

[47]

Liu Qet al. . KDM6B preferentially promotes bone formation over resorption to facilitate postnatal bone mass accrual through collagen triple helix repeat containing 1-mediated PKCδ/MAPKs signaling. J. Bone Miner. Res.. 2025, 40: 671-687.

[48]

Ying Qet al. . AGEs impair osteogenesis in orthodontic force-induced periodontal ligament stem cells through the KDM6B/Wnt self-reinforcing loop. Stem Cell Res. Ther.. 2024, 15: 431.

[49]

Liu Cet al. . Foxk1 promotes bone formation through inducing aerobic glycolysis. Cell Death Differ.. 2024, 311650-1663.

[50]

Sun Qet al. . FTO/RUNX2 signaling axis promotes cementoblast differentiation under normal and inflammatory conditions. Biochim. Biophys. Acta Mol. Cell Res.. 2022, 1869. 119358

[51]

Chen Y, Zhang Y, Ramachandran A, George A. DSPP is essential for normal development of the dental-craniofacial complex. J. Dent. Res.. 2016, 95: 302-310.

[52]

Katoh M, Katoh M. Integrative genomic analyses of ZEB2: Transcriptional regulation of ZEB2 based on SMADs, ETS1, HIF1alpha, POU/OCT, and NF-kappaB. Int. J. Oncol.. 2009, 34: 1737-1742.

[53]

Conidi Aet al. . Few Smad proteins and many Smad-interacting proteins yield multiple functions and action modes in TGFβ/BMP signaling in vivo. Cytokine Growth Factor Rev.. 2011, 22: 287-300.

[54]

Yang B, Sun H, Song F, Wu Y, Wang J. Yes-associated protein 1 promotes the differentiation and mineralization of cementoblast. J. Cell Physiol.. 2018, 233: 2213-2224.

[55]

Lira Dos Santos EJet al. . Orthodontic tooth movement alters cementocyte ultrastructure and cellular cementum proteome signature. Bone. 2021, 153. 116139

[56]

Majumder, S. et al. Shifts in podocyte histone H3K27me3 regulate mouse and human glomerular disease. J. Clin. Investig.128, 483–499.

[57]

Motoike, S., Inada, Y., Toguchida, J., Kajiya, M. & Ikeya, M. Jawbone-like organoids generated from human pluripotent stem cells. Nat. Biomed. Eng. https://doi.org/10.1038/s41551-025-01419-3 (2025).

[58]

Liu Fet al. . Dental pulp stem cells-derived cannabidiol-treated organoid-like microspheroids show robust osteogenic potential via upregulation of WNT6. Commun. Biol.. 2024, 7: 972.

[59]

Xie X, Xu C, Zhao H, Wang J, Feng JQ. A biphasic feature of Gli1+-mesenchymal progenitors during cementogenesis that is positively controlled by Wnt/β-catenin signaling. J. Dent. Res.. 2021, 1001289-1298.

[60]

Yu, G., Wang, L.-G., Han, Y. & He, Q.-Y. clusterProfiler: an R Package for comparing biological themes among gene clusters. OMICS16, 284–287 (2012).

[61]

Liu Yet al. . CB-Dock2: improved protein–ligand blind docking by integrating cavity detection, docking and homologous template fitting. Nucleic Acids Res.. 2022, 50: W159-W164.

Funding

National Natural Science Foundation of China (National Science Foundation of China)(82170963)

本研究得到了国家对曹正国国家重点研发计划(No.2023YFC2506300)和武汉大学口腔医学院和医院对曹正国(ZW202402)科研项目的部分支持。

RIGHTS & PERMISSIONS

The Author(s)

PDF

0

Accesses

0

Citation

Detail

Sections
Recommended

/