Arginine modulates the pH, microbial composition, and matrix architecture of biofilms from caries-active patients

Yumi C. Del Rey , Pernille D. Rikvold , Marie B. Lund , Eero J. Raittio , Andreas Schramm , Rikke L. Meyer , Sebastian Schlafer

International Journal of Oral Science ›› 2025, Vol. 17 ›› Issue (1) : 70

PDF
International Journal of Oral Science ›› 2025, Vol. 17 ›› Issue (1) :70 DOI: 10.1038/s41368-025-00404-5
Article
research-article

Arginine modulates the pH, microbial composition, and matrix architecture of biofilms from caries-active patients

Author information +
History +
PDF

Abstract

The caries-preventive effects of arginine have been attributed to its impact on biofilm composition and pH. Recent in vitro studies suggest that arginine also affects the production of biofilm matrix components that contribute to virulence, but this mechanism has not been investigated clinically. This randomized, placebo-controlled, triple-blind, split-mouth in situ trial assessed arginine’s impact on the microbial composition, matrix architecture, and microscale pH of biofilms from caries-active patients (N = 10). We also examined whether individual differences in the pH response to arginine were related to biofilm composition and matrix structure. Biofilms were grown for four days on carriers attached to intraoral splints. Three times daily, the biofilms were treated extraorally with sucrose (5 min), followed by arginine or placebo (30 min), in a split-mouth design. After growth, the microscale biofilm pH response to sucrose was monitored by pH ratiometry. Microbial biofilm composition and carbohydrate matrix architecture were analyzed by 16S rRNA gene sequencing and fluorescence lectin-binding analysis, respectively. Arginine treatment significantly mitigated sucrose-induced pH drops, reduced total carbohydrate matrix production, and altered the spatial distribution of fucose- and galactose-containing carbohydrates. Both arginine- and placebo-treated biofilms were dominated by streptococci and Veillonella spp. Paired analyses showed a significant reduction in mitis/oralis group streptococci and a non-significant increase in several arginine metabolizers in arginine-treated biofilms. Individual pH responses were not significantly associated with the abundance of specific bacterial taxa or carbohydrate matrix components. In conclusion, arginine reduced the virulence of biofilms from caries-active patients through multiple mechanisms, including suppressing matrix carbohydrate production.

Cite this article

Download citation ▾
Yumi C. Del Rey, Pernille D. Rikvold, Marie B. Lund, Eero J. Raittio, Andreas Schramm, Rikke L. Meyer, Sebastian Schlafer. Arginine modulates the pH, microbial composition, and matrix architecture of biofilms from caries-active patients. International Journal of Oral Science, 2025, 17(1): 70 DOI:10.1038/s41368-025-00404-5

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Bowen WH, Burne RA, Wu H, Koo H. Oral Biofilms: Pathogens, Matrix, and Polymicrobial Interactions in Microenvironments. Trends Microbiol., 2018, 26: 229-242

[2]

Liu YL, Nascimento M, Burne RA. Progress toward understanding the contribution of alkali generation in dental biofilms to inhibition of dental caries. Int J. Oral. Sci., 2012, 4: 135-140

[3]

Takahashi N, Nyvad B. The role of bacteria in the caries process: ecological perspectives. J. Dent. Res., 2011, 90: 294-303

[4]

Marsh PD. Role of the Oral Microflora in Health. Microb. Ecol. Health Dis., 2009, 12: 130-137

[5]

Velsko, I. M., Chakraborty, B., Nascimento, M. M., Burne, R. A. & Richards, V. P. Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci. mSystems3, https://doi.org/10.1128/mSystems.00158-18 (2018).

[6]

Huang X, Schulte RM, Burne RA, Nascimento MM. Characterization of the arginolytic microflora provides insights into pH homeostasis in human oral biofilms. Caries Res., 2015, 49: 165-176

[7]

Mann AE, et al.. Heterogeneous lineage-specific arginine deiminase expression within dental microbiome species. Microbiol. Spectr., 2024, 12 e0144523

[8]

Nascimento MM. Potential uses of arginine in dentistry. Adv. Dent. Res, 2018, 29: 98-103

[9]

Koopman JE, et al.. Stability and resilience of oral microcosms toward acidification and Candida outgrowth by arginine supplementation. Micro Ecol., 2015, 69: 422-433

[10]

Agnello M, et al.. Arginine Improves pH Homeostasis via Metabolism and Microbiome Modulation. J. Dent. Res., 2017, 96: 924-930

[11]

Ledder, R. G., Mistry, H., Sreenivasan, P. K., Humphreys, G. & McBain, A. J. Arginine Exposure Decreases Acidogenesis in Long-Term Oral Biofilm Microcosms. mSphere2, https://doi.org/10.1128/mSphere.00295-17 (2017).

[12]

He J, et al.. l-Arginine modifies the Exopolysaccharide Matrix and Thwarts Streptococcus mutans outgrowth within mixed-species oral biofilms. J. Bacteriol., 2016, 198: 2651-2661

[13]

Huang X, et al.. Effect of arginine on the growth and biofilm formation of oral bacteria. Arch. Oral. Biol., 2017, 82: 256-262

[14]

Bijle MN, Ashraf U, Abdalla MM, Neelakantan P, Yiu CKY. Biofilm modulatory response of arginine-fluoride varnish on multi-species biofilm. J. Dent., 2022, 122 104096

[15]

Nascimento MM, et al.. Metabolic profile of Supragingival plaque exposed to arginine and fluoride. J. Dent. Res., 2019, 98: 1245-1252

[16]

Nascimento MM, et al.. The effect of arginine on oral biofilm communities. Mol. Oral. Microbiol., 2014, 29: 45-54

[17]

Dige I, et al.. Fluorescence lectin binding analysis of carbohydrate components in dental biofilms grown in situ in the presence or absence of sucrose. Mol. Oral. Microbiol., 2022, 37: 196-205

[18]

Del Rey YC, Schramm A, Meyer RL, Lund MB, Schlafer S. Combined pH ratiometry and fluorescence lectin-binding analysis (pH-FLBA) for microscopy-based analyses of biofilm pH and matrix carbohydrates. Appl Environ. Microbiol., 2024, 90 e0200723

[19]

Bik EM, et al.. Bacterial diversity in the oral cavity of 10 healthy individuals. ISME J., 2010, 4: 962-974

[20]

Benítez-Páez A, Belda-Ferre P, Simón-Soro A, Mira A. Microbiota diversity and gene expression dynamics in human oral biofilms. BMC Genomics, 2014, 15 311

[21]

Tawakoli PN, et al.. Visualizing the dental biofilm matrix by means of fluorescence lectin-binding analysis. J. Oral. Microbiol., 2017, 9: 1345581

[22]

Assar S, et al.. Microscale analyses of the effect of arginine on oral biofilms. J. Dent., 2025, 160 105863

[23]

Wickstrom C, Svensater G. Salivary gel-forming mucin MUC5B-a nutrient for dental plaque bacteria. Oral. Microbiol. Immunol., 2008, 23: 177-182

[24]

Wickstrom, C., Herzberg, M. C., Beighton, D. & Svensater, G. Proteolytic degradation of human salivary MUC5B by dental biofilms. Microbiology155, 2866–2872 (2009).

[25]

Hudson, A. W., Barnes, A. J., Bray, A. S. & Zafar, M. A. Klebsiella pneumoniae L-Fucose metabolism promotes gastrointestinal colonization and modulates its virulence determinants. Infect. Immun.90, e0020622 (2022).

[26]

Shizukuishi S, Taniguchi T, Nakamura R, Tsunemitsu A. alpha-L-fucosidase activity of some oral streptococci. Arch. oral. Biol., 1976, 21: 781-783

[27]

van der Hoeven JS, Camp PJ. The use of lectins in monitoring degradation of oligosaccharide chains in mucin by oral streptococci. Caries Res, 1994, 28: 257-261

[28]

Byers HL, Tarelli E, Homer KA, Beighton D. Sequential deglycosylation and utilization of the N-linked, complex-type glycans of human alpha1-acid glycoprotein mediates growth of Streptococcus oralis. Glycobiology, 1999, 9: 469-479

[29]

Xiao J, et al.. The exopolysaccharide matrix modulates the interaction between 3D architecture and virulence of a mixed-species oral biofilm. PLoS Pathog., 2012, 8: e1002623

[30]

Guo L, McLean JS, Lux R, He X, Shi W. The well-coordinated linkage between acidogenicity and aciduricity via insoluble glucans on the surface of Streptococcus mutans. Sci. Rep., 2015, 5 18015

[31]

Del Rey YC, et al.. pH-FISH: coupled microscale analysis of microbial identity and acid-base metabolism in complex biofilm samples. Microbiome, 2024, 12 266

[32]

Ramirez-Mora T, Retana-Lobo C, Valle-Bourrouet G. Biochemical characterization of extracellular polymeric substances from endodontic biofilms. PLoS One, 2018, 13: e0204081

[33]

Lu Y, et al.. The rnc Gene regulates the microstructure of Exopolysaccharide in the biofilm of Streptococcus mutans through the β-Monosaccharides. Caries Res., 2021, 55: 534-545

[34]

Rikvold, P. T. et al. A new device for in situ dental biofilm collection additively manufactured by direct metal laser sintering and vat photopolymerization. 3D Printing and Additive Manufacturing%@ 2329-7662. https://doi.org/10.1089/3dp.2022.0009 (2022).

[35]

Schlafer S, et al.. Ratiometric imaging of extracellular pH in bacterial biofilms with C-SNARF-4. Appl Environ. Microbiol, 2015, 81: 1267-1273

[36]

Daims H, Lucker S, Wagner M. daime, a novel image analysis program for microbial ecology and biofilm research. Environ. Microbiol, 2006, 8: 200-213

[37]

Schneider CA, Rasband WS, Eliceiri KW. NIH Image to ImageJ: 25 years of image analysis. Nat. Methods, 2012, 9: 671-675

[38]

Gundersen HJ, Jensen EB. The efficiency of systematic sampling in stereology and its prediction. J. Microsc, 1987, 147: 229-263

[39]

Herlemann DP, et al.. Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea. ISME J., 2011, 5: 1571-1579

[40]

Team, R. C. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org. (2023).

[41]

Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. J., 2011, 17: 10

[42]

Callahan BJ, et al.. DADA2: High-resolution sample inference from Illumina amplicon data. Nat. Methods, 2016, 13: 581-583

[43]

Quast C, et al.. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res., 2013, 41: D590-D596

[44]

Davis NM, Proctor DM, Holmes SP, Relman DA, Callahan BJ. Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. Microbiome, 2018, 6 226

RIGHTS & PERMISSIONS

The Author(s)

PDF

39

Accesses

0

Citation

Detail

Sections
Recommended

/