Diversified alternaria pathogenicity alters plant-soil feedbacks through leaf-root-microbiome dynamics in agroforestry systems

Lifen Luo , Zhengping Wang , Xiubei Yan , Chen Ye , Jianjun Hao , Xili Liu , Shusheng Zhu , Min Yang

Horticulture Research ›› 2025, Vol. 12 ›› Issue (8) : 137

PDF (2975KB)
Horticulture Research ›› 2025, Vol. 12 ›› Issue (8) :137 DOI: 10.1093/hr/uhaf137
Articles
research-article
Diversified alternaria pathogenicity alters plant-soil feedbacks through leaf-root-microbiome dynamics in agroforestry systems
Author information +
History +
PDF (2975KB)

Abstract

Interspecific interactions including plant-plant, plant-microbe, and plant-insect are the important elements to drive the positive plant-soil feedback for maintaining ecosystem stability in biodiversity ecosystems. Yet, the role of diversified foliar pathogens in biodiversity system in influencing the plant-soil feedback (PSF) has often been underestimated. Here, we assessed the effects of foliar Alternaria panax pathogenicity diversity from agroforestry system on PSF and rhizosphere microbial community. We show that a moderate intensity of foliar pathogen infection by A. panax could activate jasmonic acid (JA)-mediated defense from shoots to roots. This activation enhanced the synthesis and secretion of 2-aminoethanesulfonic acid into the rhizosphere for a disease-suppressive rhizo-microbiota assembly, contributing to positive PSF. However, excessive foliar pathogen infection allocated JA-mediated defense only in leaf and disrupted this rhizomicrobial enrichment, resulting negative PSF. This study enhances the understanding of the ecological roles of foliar pathogen within agroforestry systems and provides an insight into agricultural sustainability.

Cite this article

Download citation ▾
Lifen Luo, Zhengping Wang, Xiubei Yan, Chen Ye, Jianjun Hao, Xili Liu, Shusheng Zhu, Min Yang. Diversified alternaria pathogenicity alters plant-soil feedbacks through leaf-root-microbiome dynamics in agroforestry systems. Horticulture Research, 2025, 12(8): 137 DOI:10.1093/hr/uhaf137

登录浏览全文

4963

注册一个新账户 忘记密码

Acknowledgments

This work was supported by the Natural Science Foundation of China (U23A20202 and 32060719 ), the Major Science and Technology Project of Kunming (2021JH002), the Agricultural Joint Program Key Project of Yunnan Province (202101BD070001-003), National Key R&D Program of China (2023YFE0107500), and the Yunnan Xingdian Talent Support Program (to M.Y. and S.Z.).

Author Contributions

Min Yang, Shusheng Zhu-, and Lifen Luo conceived the ideas and designed methodology; Lifen Luo led the writing of the manuscript. Lifen Luo, Zhengping Wang, and Xiubei Yan collected the data; Lifen Luo and Chen Ye analyzed the data; and Jianjun Hao and Xili Liu edited the manuscript and provided critical suggestions. All authors contributed critically to the drafts and gave final approval for publication.

Data availability

All sequences of ITS and 16S rRNA genes of rhizosphere microbiome following different pathogenicity levels or intensity of foliar infection by A. panax can be found in the NCBI database under accession number PRJNA1104181. All sequences of ITS and 16S rRNA genes of rhizosphere microbiome following soil drenching with 2-aminoethanesulfonic acid at concentration of 0 to 100 μg/ml can be found in the NCBI database under accession number PRJNA1106096. All raw reads generated by transcriptome sequencing were deposited in the NCBI database with accession number PRJNA1104498. All data are available in the main text or the supplementary materials.

Conflict of interest statement

The authors declare that they have no competing interests.

Supplementary data

Supplementary data is available at Horticulture Research online.

References

[1]

Wei W, Yang M, Liu Y. et al. Fertilizer N application rate impacts plant-soil feedback in a sanqi production system. Sci Total Envi-ron. 2018; 633:796-807

[2]

Mariotte P, Mehrabi Z, Bezemer TM. et al. Plant-soil feedback: bridging natural and agricultural sciences. Trends Ecol Evol. 2018; 33:129-42

[3]

van der Putten WH, Bardgett RD, Bever JD. et al. Plant-soil feedbacks: the past, the present and future challenges. JEcol. 2013; 101:265-76

[4]

Mangan SA, Schnitzer SA, Herre EA. et al. Negative plant-soil feedback predicts tree-species relative abundance in a tropical forest. Nature. 2010; 466:752-5

[5]

Luo L, Zhang J, Ye C. et al. Foliar pathogen infection manipulates soil health through root exudate-modified rhizosphere micro-biome. Microbiol Spectr. 2022; 10:e0241822

[6]

Pizano C, Kitajima K, Graham JH. et al. Negative plant-soil feedbacks are stronger in agricultural habitats than in forest fragments in the tropical Andes. Ecology. 2019; 100:e02850

[7]

Kos M, Tuijl MAB, de Roo J. et al. Species-specific plant-soil feedback effects on above-ground plant-insect interactions. JEcol. 2015; 103:904-14

[8]

Ain Q, Mushtaq W, Shadab M. et al. Allelopathy: an alternative tool for sustainable agriculture. Physiol Mol Biol Plants. 2023; 29: 495-511

[9]

Cardinale BJ, Matulich KL, Hooper DU. et al. The functional role of producer diversity in ecosystems. Am J Bot. 2011; 98:572-92

[10]

Kanchiswamy CN, Malnoy M, Maffei ME.Chemical diversity of microbial volatiles and their potential for plant growth and productivity. Front Plant Sci. 2015; 6:151

[11]

Hartmann M, Frey B, Mayer J. et al. Distinct soil microbial diver-sity under long-term organic and conventional farming. ISME J. 2015; 9:1177-94

[12]

He C, Wang H, Jin X. et al. Identification of Alternaria species asso-ciated with black spot disease on Panax notoginseng in Yunnan and Guangxi. Acta Phytopathol Sin. 2020; 50:246-50

[13]

Lin BB. Resilience in agriculture through crop diversification: adaptive management for environmental change. Bioscience. 2011; 61:183-93

[14]

Tao J, Cao P, Xiao Y. et al. Distribution of the potential pathogenic Alternaria on plant leaves determines foliar fungal communities around the disease spot. Environ Res. 2021; 200:111715

[15]

Yuan J, Zhao J, Wen T. et al. Root exudates drive the soil-borne legacy of aboveground pathogen infection. Microbiome. 2018; 6:156

[16]

Friman J, Karssemeijer PN, Haller J. et al. Shoot and root insect herbivory change the plant rhizosphere microbiome and affects cabbage-insect interactions through plant-soil feedback. New Phytol. 2021; 232:2475-90

[17]

Liu Y, Zhang H, Wang J. et al. Nonpathogenic pseudomonas syringae derivatives and its metabolites trigger the plant "cry for help" response to assemble disease suppressing and growth promoting rhizomicrobiome. Nat Commun. 2024; 15:1907

[18]

Ngou BPM, Jones JDG, Ding P. Plant immune networks. Trends Plant Sci. 2022; 27:255-73

[19]

Pieterse CM, Van der Does D, Zamioudis C. et al. Hormonal modulation of plant immunity. Annu Rev Cell Dev Biol. 2012; 28: 489-521

[20]

Huang AC, Jiang T, Liu YX. et al. A specialized metabolic net-work selectively modulates Arabidopsis root microbiota. Science. 2019;364:eaau6389

[21]

Yu P, He X, Baer M. et al. Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitro-gen deprivation. Nat Plants. 2021; 7:481-99

[22]

Liu S, Gao X, Shi M. et al. Jasmonic acid regulates the biosynthesis of medicinal metabolites via the JAZ9-MYB76 complex in salvia miltiorrhiza. Hortic Res. 2023;10:uhad004

[23]

Cheng Y, Hong X, Zhang L. et al. Transcriptomic analysis provides insight into the regulation mechanism of silver ions (Ag+)and jasmonic acid methyl ester (MeJA) on secondary metabolism in the hairy roots of salvia miltiorrhiza Bunge (Lamiaceae). Medicinal Plant Biology. 2023; 2:0

[24]

Yang M, Zhang X, Xu Y. et al. Autotoxic ginsenosides in the rhi-zosphere contribute to the replant failure of Panax notoginseng. PLoS One. 2015; 10:e0118555

[25]

Santoyo G. How plants recruit their microbiome? New insights into beneficial interactions. J Adv Res. 2022; 40:45-58

[26]

Paredes SH, Lebeis SL. Giving back to the community: micro-bial mechanisms of plant-soil interactions. Funct Ecol. 2016; 30: 1043-52

[27]

Cappelli SL, Domeignoz-Horta LA, Loaiza V. et al. Plant biodi-versity promotes sustainable agriculture directly and via below-ground effects. Trends Plant Sci. 2022; 27:674-87

[28]

Prommer J, Walker TWN, Wanek W. et al. Increased micro-bial growth, biomass, and turnover drive soil organic carbon accumulation at higher plant diversity. Glob Chang Biol. 2020; 26: 669-81

[29]

Compant S, Cassan F, Kosti ćT. et al. Harnessing the plant microbiome for sustainable crop production. Nat Rev Microbiol. 2025; 23:9-23

[30]

Liu H, Li J, Carvalhais LC. et al. Evidence for the plant recruitment of beneficial microbes to suppress soil-borne pathogens. New Phytol. 2021; 229:2873-85

[31]

Gröning JA, Eulberg D, Tischler D. et al. Gene redundancy of two-component (chloro)phenol hydroxylases in Rhodococcus opacus 1CP. FEMS Microbiol Lett. 2014; 361:68-75

[32]

Vejan P, Abdullah R, Khadiran T. et al. Role of plant growth promoting rhizobacteria in agricultural sustainability-a review. Molecules. 2016; 21:573

[33]

Berendsen RL, Vismans G, Yu K. et al. Disease-induced assem-blage of a plant-beneficial bacterial consortium. ISME J. 2018; 12: 1496-507

[34]

Magesh S, Hurley AI, Nepper JF. et al. Surface colonization by Flavobacterium johnsoniae promotes its survival in a model micro-bial community. MBio. 2024; 15:e0342823

[35]

Lee SM, Kong HG, Song GC. et al. Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease. ISME J. 2021; 15:330-47

[36]

Sun X, Xu Z, Xie J. et al. Bacillus velezensis stimulates resi-dent rhizosphere pseudomonas stutzeri for plant health through metabolic interactions. ISME J. 2022; 16:774-87

[37]

Guo C, Yang M, Jiang B. et al. Moisture controls the suppression of Panax notoginseng root rot disease by indigenous bacterial communities. mSystems. 2022; 7:e0041822

[38]

Poudel R, Jumpponen A, Schlatter DC. et al. Microbiome net-works: a systems framework for identifying candidate microbial assemblages for disease management. Phytopathology. 2016; 106: 1083-96

[39]

Zhou X, Wang J, Liu F. et al. Cross-kingdom synthetic microbiota supports tomato suppression of Fusarium wilt disease. Nat Com-mun. 2022; 13:7890

[40]

Baetz U, Martinoia E. Root exudates: the hidden part of plant defense. Trends Plant Sci. 2014; 19:90-8

[41]

Sharma I, Kashyap S, Agarwala N. Biotic stress-induced changes in root exudation confer plant stress tolerance by altering rhi-zospheric microbial community. Front Plant Sci. 2023; 14:1132824

[42]

Li M, Yu G, Cao C. et al. Metabolism, signaling, and transport of jasmonates. Plant Commun. 2021; 2:100231

[43]

Schulze A, Zimmer M, Mielke S. et al. Wound-induced shoot-to-root relocation of JA-ile precursors coordinates Arabidopsis growth. Mol Plant. 2019; 12:1383-94

[44]

Guan L, Denkert N, Eisa A. et al. JASSY, a chloroplast outer membrane protein required for jasmonate biosynthesis. Proc Natl Acad Sci USA. 2019; 116:10568-75

[45]

Luo L, Wang Y, Qiu L. et al. MYC2: a master switch for plant physiological processes and specialized metabolite synthesis. Int JMol Sci. 2023; 24:3511

[46]

Ma P, Pei T, Lv B. et al. Functional pleiotropism, diversity, and redundancy of salvia miltiorrhiza Bunge JAZ family proteins in jasmonate-induced tanshinone and phenolic acid biosynthesis. Hortic Res. 2022;9:uhac166

[47]

Man J, Shi Y, Huang Y. et al. PnMYB4 negatively modulates saponin biosynthesis in Panax notoginseng through interplay with PnMYB1. Hortic Res. 2023;10:uhad134

[48]

Rios JJ, Pascual JA, Guillen M. et al. Influence of foliar methyl-jasmonate biostimulation on exudation of glucosinolates and their effect on root pathogens of broccoli plants under salinity condition. Sci Hortic. 2021; 282:110027

[49]

Kulkarni OS, Mazumder M, Kini S. et al. Volatile methyl jas-monate from roots triggers host-beneficial soil microbiome biofilms. Nat Chem Biol. 2024; 20:473-83

[50]

Badri DV, Loyola-Vargas VM, Du J. et al. Transcriptome analysis of Arabidopsis roots treated with signaling compounds: a focus on signal transduction, metabolic regulation and secretion. New Phytol. 2008; 179:209-23

[51]

Tian H, Xu L, Li X. et al. Salicylic acid: the roles in plant immunity and crosstalk with other hormones. J Integr Plant Biol. 2025; 67: 773-85

[52]

Hou S, Tsuda K. Salicylic acid and jasmonic acid crosstalk in plant immunity. Essays Biochem. 2022; 66:647-56

[53]

Zhang H, Wang F, Song W. et al. Different viral effectors suppress hormone-mediated antiviral immunity of rice coordinated by OsNPR1. Nat Commun. 2023; 14:3011

[54]

Lebeis SL, Paredes SH, Lundberg DS. et al. Salicylic acid modu-lates colonization of the root microbiome by specific bacterial taxa. Science. 2015; 349:860-4

[55]

Carvalhais LC, Dennis PG, Badri DV. et al. Linking jasmonic acid signaling, root exudates, and rhizosphere microbiomes. Mol Plant-Microbe Interact. 2015; 28:1049-58

[56]

Zhang H, Zhao Y, Zhu JK. Thriving under stress: how plants balance growth and the stress response. Dev Cell. 2020; 55: 529-43

[57]

Zaret M, Kinkel L, Borer ET. et al. Plant growth-defense trade-offs are general across interactions with fungal, insect, and mammalian consumers. Ecology. 2024; 105:e4290

[58]

Uji Y, Suzuki G, Fujii Y. et al. Jasmonic acid (JA)-mediating MYB transcription factor1, JMTF1, coordinates the balance between JA and auxin signalling in the rice defence response. Physiol Plant. 2024; 176:e14257

[59]

Gu YQ, Wildermuth MC, Chakravarthy S. et al. Tomato transcrip-tion factors pti4, pti5, and pti6 activate defense responses when expressed in Arabidopsis. Plant Cell. 2002; 14:817-31

[60]

Jiang Y, Yu D. WRKY transcription factors: links between phyto-hormones and plant processes. Sci China Life Sci. 2015; 58:501-2

[61]

Wen T, Xie P, Liu H. et al. Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. Nat Commun. 2023; 14:4497

[62]

Li H, Zhang L, Li J. et al. Resistant starch intake facilitates weight loss in humans by reshaping the gut microbiota. Nat Metab. 2024; 6:578-97

[63]

Rolfe SA, Griffiths J, Ton J. Crying out for help with root exu-dates: adaptive mechanisms by which stressed plants assemble health-promoting soil microbiomes. Curr Opin Microbiol. 2019; 49: 73-82

[64]

Dedyukhina EG, Kamzolova SV, Vainshtein MB. Arachidonic acid as an elicitor of the plant defense response to phytopathogens. Chem Biol Technol Agric. 2014; 1:18

[65]

Luo L, Guo C, Wang L. et al. Negative plant-soil feedback driven by re-assemblage of the rhizosphere microbiome with the growth of Panax notoginseng. Front Microbiol. 2019; 10:1597

[66]

Badri DV, Chaparro JM, Zhang R. et al. Application of natural blends of phytochemicals derived from the root exudates of Ara-bidopsis to the soil reveal that phenolic-related compounds pre-dominantly modulate the soil microbiome. JBiolChem. 2013; 288: 4502-12

PDF (2975KB)

208

Accesses

0

Citation

Detail

Sections
Recommended

/