Aquifer characterization and salinization origin using unsupervised machine learning and 3D gravity inversion modeling, Siwa Oasis, Egypt

Mohamed Hamdy Eid , Khouloud Jlaiel , Mohamed Ayed Elbalawy , Yetzabbel G. Flores , Ali A. Mohieldain , Tamer Nassar , Mostafa R. Abukhadra , Haifa A. Alqhtani , Attila Kovács , Péter Szucs

Geoscience Frontiers ›› 2026, Vol. 17 ›› Issue (2) : 102258

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Geoscience Frontiers ›› 2026, Vol. 17 ›› Issue (2) :102258 DOI: 10.1016/j.gsf.2026.102258
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Aquifer characterization and salinization origin using unsupervised machine learning and 3D gravity inversion modeling, Siwa Oasis, Egypt
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Abstract

This study presents an integrated approach, combining machine learning clustering with gravity data analysis, to characterize the region’s aquifer systems. K-means and Self-Organizing Maps (SOM) were applied to well log data, including Gamma Ray (GR), Spontaneous Potential (SP), and resistivity (R), to delineate lithofacies. Three distinct units were identified: clean sand, shaly sand, and clay-rich facies. The SOM algorithm outperformed the clustering of K-means in accurately estimating layer thickness and resolving lithological transitions. A 3D lithofacies model revealed spatial heterogeneity within the NSSA, highlighting clean sand layers as primary groundwater extraction zones. Gravity data analysis using upward continuation and edge-filtering techniques identified dominant NE-SW, NW-SE, and E-W lineaments controlling groundwater flow dynamics. The 3D gravity inversion model revealed density contrasts associated with structural features, providing insights into potential groundwater flow between aquifers. Spatial analysis reveals lower groundwater salinity in the southern part of the Oasis, coinciding with areas of reduced structural complexity. Higher salinity zones in central and northeastern regions show spatial correlation with gravity-derived structural systems, though causal relationships require additional validation through hydrochemical studies. This integrated approach provides critical insights for sustainable groundwater management in structurally complex arid environments. Groundwater salinization in arid oasis environments poses significant challenges for sustainable water resource management. In Siwa Oasis, Egypt, the deep Nubian Sandstone Aquifer System (NSSA) and the shallow Tertiary Carbonate Aquifer (TCA) interact through fault systems. At the same time, the potential leakage from hypersaline surface lakes creates complex hydrogeological conditions that require comprehensive characterization. Despite the critical importance of understanding aquifer connectivity and salinization processes, there remains a significant knowledge gap in the quantitative integration of multiple geophysical datasets for objective aquifer characterization and structural control identification. Traditional methods lack the spatial resolution and objective framework necessary to map lithofacies distributions and identify structural pathways controlling groundwater flow in complex multi-aquifer systems.

Keywords

Aquifer characterization / Salinization origin / Unsupervised machine learning / 3D gravity inversion modeling / Fault and fracture systems

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Mohamed Hamdy Eid, Khouloud Jlaiel, Mohamed Ayed Elbalawy, Yetzabbel G. Flores, Ali A. Mohieldain, Tamer Nassar, Mostafa R. Abukhadra, Haifa A. Alqhtani, Attila Kovács, Péter Szucs. Aquifer characterization and salinization origin using unsupervised machine learning and 3D gravity inversion modeling, Siwa Oasis, Egypt. Geoscience Frontiers, 2026, 17(2): 102258 DOI:10.1016/j.gsf.2026.102258

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CRediT authorship contribution statement

Mohamed Hamdy Eid: Writing - review & editing, Writing - original draft, Visualization, Validation, Software, Methodology, Investigation, Conceptualization. Khouloud Jlaiel: Writing - original draft, Software, Data curation. Mohamed Ayed Elbalawy: Writing - original draft, Visualization, Software. Yetzabbel G. Flores: Writing - original draft, Software, Methodology, Data curation. Ali A. Mohieldain: Visualization, Validation, Software, Data curation. Tamer Nassar: Resources, Methodology, Investigation, Formal analysis, Data curation, Conceptualization. Mostafa R. Abukhadra: Writing - review & editing, Methodology, Investigation, Formal analysis, Data curation, Conceptualization. Haifa A. Alqhtani: Writing - review & editing, Resources, Funding acquisition. Attila Kovács: Writing - review & editing, Supervision. Péter Szucs: Writing - review & editing, Supervision, Resources, Project administration, Funding acquisition, Conceptualization.

Declaration of competing interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Acknowledgements

We would like to thank the sustainable development and technologies national program of the Hungarian Academy of Sciences (FFT NP FTA) for funding this research work. The authors acknowledge Princess Nourah bint Abdulrahman University Researchers Supporting Project (Grant No. PNURSP2026R458), Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.

Data availability

The datasets utilized and/or analyzed during the current study are available upon request from the corresponding author.

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