Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): Codon Usage and Replicative Fitness

Darja Kanduc

Global Medical Genetics ›› 2020, Vol. 7 ›› Issue (03) : 92 -94.

PDF (128KB)
Global Medical Genetics ›› 2020, Vol. 7 ›› Issue (03) : 92 -94. DOI: 10.1055/s-0040-1721080
Rapid Communication
Rapid Communication

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): Codon Usage and Replicative Fitness

Author information +
History +
PDF (128KB)

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) codon usage, as shown by the polyprotein coding sequence, shows better translation potential in the human host when compared with human coronavirus OC43 (HCoV-OC43) codon usage. Such translational advantage might facilitate SARS-CoV-2 replication, immunogenicity, and pathogenicity, thus also accounting for the less harmful character of HCoV-OC43 infection.

Keywords

codon usage / HCoV-OC43 / SARS-CoV-2 / viral replication fitness

Cite this article

Download citation ▾
Darja Kanduc. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): Codon Usage and Replicative Fitness. Global Medical Genetics, 2020, 7(03): 92-94 DOI:10.1055/s-0040-1721080

登录浏览全文

4963

注册一个新账户 忘记密码

Funding

None.

Conflict of Interest

None declared.

Supplementary Material

Supplementary Material

References

[1]

Wang Z, Yang B, Li Q, Wen L, Zhang R. Clinical features of 69 cases with Coronavirus Disease 2019 in Wuhan, China. Clin Infect Dis 2020; 71(15): 769-777

[2]

Cameron MJ, Bermejo-Martin JF, Danesh A, Muller MP, Kelvin DJ. Human immunopathogenesis of severe acute respiratory syndrome (SARS). Virus Res 2008; 133(01): 13-19

[3]

Kanduc D. From anti-SARS-CoV-2 immune responses to COVID-19 via molecular mimicry. Antibodies (Basel) 2020; 9(03): E33

[4]

Lin YS, Lin CF, Fang YT, et al. Antibody to severe acute respiratory syndrome (SARS)-associated coronavirus spike protein domain 2 cross-reacts with lung epithelial cells and causes cytotoxicity. Clin Exp Immunol 2005; 141(03): 500-508

[5]

Kanduc D, Shoenfeld Y. On the molecular determinants of the SARS-CoV-2 attack. Clin Immunol 2020; 215: 108426

[6]

Zhao J, Yuan Q, Wang H, et al. Antibody responses to SARS-CoV-2 in patients of novel coronavirus disease 2019. Clin Infect Dis 2020

[7]

(e-pub ahead of print). DOI: 10.1093/cid/ciaa344.

[8]

Lim YX, Ng YL, Tam JP, Liu DX. Human coronaviruses: a review of virus-host interactions. Diseases 2016; 4(03): 26

[9]

Kanduc D. Role of codon usage and tRNA changes in rat cytomegalovirus latency and (re)activation. J Basic Microbiol 2016; 56(06): 617-626

[10]

Kanduc D. Rare human codons and HCMV translational regulation. J Mol Microbiol Biotechnol 2017; 27(04): 213-216

[11]

Nakamura Y, Gojobori T, Ikemura T. Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res 2000; 28(01): 292

[12]

Quax TE, Claassens NJ, Söll D, van der Oost J. Codon bias as a means to fine-tune gene expression. Mol Cell 2015; 59(02): 149-161

[13]

Supek F. The code of silence: widespread associations between synonymous codon biases and gene function. J Mol Evol 2016; 82(01): 65-73

[14]

Tijms MA, Nedialkova DD, Zevenhoven-Dobbe JC, Gorbalenya AE, Snijder EJ. Arterivirus subgenomic mRNA synthesis and virion biogenesis depend on the multifunctional nsp1 autoprotease. J Virol 2007; 81(19): 10496-10505

[15]

Krichel B, Falke S, Hilgenfeld R, Redecke L, Uetrecht C. Processing of the SARS-CoV pp1a/ab nsp7-10 region. Biochem J 2020; 477(05): 1009-1019

[16]

Agrawal AS, Tao X, Algaissi A, et al. Immunization with inactivated Middle East Respiratory Syndrome coronavirus vaccine leads to lung immunopathology on challenge with live virus. Hum Vaccin Immunother 2016; 12(09): 2351-2356

[17]

Cameron MJ, Kelvin AA, Leon AJ, et al. Lack of innate interferon responses during SARS coronavirus infection in a vaccination and reinfection ferret model. PLoS One 2012; 7(09): e45842

[18]

Tseng CT, Sbrana E, Iwata-Yoshikawa N, et al. Immunization with SARS coronavirus vaccines leads to pulmonary immunopathology on challenge with the SARS virus. PLoS One 2012; 7(04): e35421

[19]

Yasui F, Kai C, Kitabatake M, et al. Prior immunization with severe acute respiratory syndrome (SARS)-associated coronavirus (SARS-CoV) nucleocapsid protein causes severe pneumonia in mice infected with SARS-CoV. J Immunol 2008; 181(09): 6337-6348

[20]

Kanduc D, Shoenfeld Y. Inter-pathogen peptide sharing and the original antigenic sin: solving a paradox. Open Immunol J 2018; 8: 16-27

[21]

Kanduc D. Immunogenicity, Immunopathogenicity,Immunotolerance in One Graph. Anticancer Agents Med Chem 2015; 15: 1264-1268 . Doi: 10.2174/1871520615666150716105543

[22]

Kanduc D. Hydrophobicity and the Physico-Chemical Basis of Immunotolerance. Pathobiology 2020; 87: 268-276

RIGHTS & PERMISSIONS

Global Medical Genetics

AI Summary AI Mindmap
PDF (128KB)

530

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/