A groundbreaking achievement in genomics: the complete telomere-to-telomere sequence of a mouse genome

Wei-Guo Zhu

Genome Instability & Disease ›› 2025

Genome Instability & Disease ›› 2025 DOI: 10.1007/s42764-024-00144-6
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A groundbreaking achievement in genomics: the complete telomere-to-telomere sequence of a mouse genome

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Abstract

The article titled “The Complete telomere-to-telomere Sequence of a Mouse Genome” provides a significant advancement in the field of genomics by completing the telomere-to-telomere (T2T) sequencing of the mouse genome, a task that had previously been hindered by gaps, particularly in regions rich in repetitive sequences. Their work addresses long-standing limitations in the current mouse genome assembly, GRCm39, which, despite being the most widely used reference, left over about 8% of the genome unsequenced. These previously inaccessible regions include crucial areas such as ribosomal DNA arrays, pericentromeric regions, and subtelomeric regions, as well as additional protein-coding genes.

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Wei-Guo Zhu. A groundbreaking achievement in genomics: the complete telomere-to-telomere sequence of a mouse genome. Genome Instability & Disease, 2025 https://doi.org/10.1007/s42764-024-00144-6

References

Black BE, Cleveland DW. Epigenetic centromere propagation and the nature of CENP-a nucleosomes Cell, 2011, 144: 471-479.
CrossRef Google scholar
Cheng H, Concepcion GT, Feng X, Zhang H, Li H. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm Nature Methods, 2021, 18: 170-175.
CrossRef Google scholar
Eid J, et al.. Real-time DNA sequencing from single polymerase molecules Science, 2009, 323: 133-138.
CrossRef Google scholar
Falcon KT, et al.. Dynamic regulation and requirement for ribosomal RNA transcription during mammalian development Proceedings of the National Academy of Sciences United States of America, 2022, 119. e2116974119
CrossRef Google scholar
Genuth NR, Barna M. The discovery of ribosome heterogeneity and its implications for gene regulation and organismal life Molecular Cell, 2018, 71: 364-374.
CrossRef Google scholar
Hsu TC, Cooper JE, Mace ML Jr, Brinkley BR. Arrangement of centromeres in mouse cells Chromosoma, 1971, 34: 73-87.
CrossRef Google scholar
Jain M, et al.. Nanopore sequencing and assembly of a human genome with ultra-long reads Nature Biotechnology, 2018, 36: 338-345.
CrossRef Google scholar
Liu J, et al.. The complete telomere-to-telomere sequence of a mouse genome Science, 2024, 386: 1141-1146.
CrossRef Google scholar
Logsdon GA, et al.. The variation and evolution of complete human centromeres Nature, 2024, 629: 136-145.
CrossRef Google scholar
Marshall E. Genome sequencing. Public group completes draft of the mouse Science, 2002, 296: 1005.
CrossRef Google scholar
Mouse Genome Sequencing Consortium . Initial sequencing and comparative analysis of the mouse genome Nature, 2002, 420: 520-562.
CrossRef Google scholar
Nurk S, et al.. The complete sequence of a human genome Science, 2022, 376: 44-53.
CrossRef Google scholar
Pan D, et al.. Mechanism of centromere recruitment of the CENP-A chaperone HJURP and its implications for centromere licensing Nature Communications, 2019, 10: 4046.
CrossRef Google scholar
Razzaq A, Bejaoui Y, Alam T, Saad M, El Hajj N. Ribosomal DNA copy number variation is coupled with DNA methylation changes at the 45S rDNA locus Epigenetics, 2023, 18: 2229203.
CrossRef Google scholar
Rodriguez-Algarra F, et al.. Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states Genome Biology, 2022, 23: 54.
CrossRef Google scholar
Vollger MR, et al.. Segmental duplications and their variation in a complete human genome Science, 2022, 376: eabj6965.
CrossRef Google scholar
Wang M, Lemos B. Ribosomal DNA harbors an evolutionarily conserved clock of biological aging Genome Research, 2019, 29: 325-333.
CrossRef Google scholar
Watada E, et al.. Age-dependent ribosomal DNA variations in mice Molecular and Cellular Biology, 2020.
CrossRef Google scholar

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