Q-space-coordinate-guided neural networks for high-fidelity diffusion tensor estimation from minimal diffusion-weighted images

Abstract

Diffusion tensor imaging (DTI) is a widely used imaging technique for mapping living human brain tissue's microstructure and structural connectivity. Recently, deep learning methods have been proposed to rapidly estimate diffusion tensors (DTs) using only a small quantity of diffusion-weighted (DW) images. However, these methods typically use the DW images obtained with fixed q-space sampling schemes as the training data, limiting the application scenarios of such methods. To address this issue, we develop a new deep neural network called q-space-coordinate-guided diffusion tensor imaging (QCG-DTI), which can efficiently and correctly estimate DTs under flexible q-space sampling schemes. First, we propose a q-space-coordinate-embedded feature consistency strategy to ensure the correspondence between q-space-coordinates and their respective DW images. Second, a q-space-coordinate fusion (QCF) module is introduced which efficiently embeds q-space-coordinates into multiscale features of the corresponding DW images by linearly adjusting the feature maps along the channel dimension, thus eliminating the dependence on fixed diffusion sampling schemes. Finally, a multiscale feature residual dense (MRD) module is proposed which enhances the network's feature extraction and image reconstruction capabilities by using dual-branch convolutions with different kernel sizes to extract features at different scales. Compared to state-of-the-art methods that rely on a fixed sampling scheme, the proposed network can obtain high-quality diffusion tensors and derived parameters even using DW images acquired with flexible q-space sampling schemes. Compared to state-of-the-art deep learning methods, QCG-DTI reduces the mean absolute error by approximately 15% on fractional anisotropy and around 25% on mean diffusivity.

Keywords

Diffusion tensor imaging / Diffusion tractography / Deep learning / Fast diffusion tensor estimation / Q-space-coordinate information

RIGHTS & PERMISSIONS

Zhejiang University Press