Construction of a Fosmid genomic library of Streptomyces roseoflavus Men-myco-93-63

Weiming SUN , Wei GUO , Daqun LIU , Tinghui LIU , Lina FENG , Lianna LIU , Yaning LI , Yakun ZHANG

Front. Agric. China ›› 2011, Vol. 5 ›› Issue (4) : 576 -580.

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Front. Agric. China ›› 2011, Vol. 5 ›› Issue (4) : 576 -580. DOI: 10.1007/s11703-011-1119-x
RESEARCH ARTICLE
RESEARCH ARTICLE

Construction of a Fosmid genomic library of Streptomyces roseoflavus Men-myco-93-63

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Abstract

To clone the antibiotic biosynthesis gene cluster of Streptomyces roseoflavus Men-myco-93-63, we constructed a Fosmid genomic library. The genomic DNA of the strain Men-myco-93-63 was isolated by the modified CTAB procedure, and the size of most genomic DNA fragments was larger than 150 kb. Then, a Fosmid genomic library containing more than 6000 clones was constructed. The average size of the inserted DNA in recombinant plasmids was 38.1 kb, and the probability of harboring any gene in the genome of the strain Men-myco-93-63 was 99.99%. The library coverage was at least a 10-fold genome equivalent. Therefore, the constructed Fosmid library meets the requirements as a standard genomic library

Keywords

Streptomyces roseoflavus / Fosmid / genomic library

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Weiming SUN, Wei GUO, Daqun LIU, Tinghui LIU, Lina FENG, Lianna LIU, Yaning LI, Yakun ZHANG. Construction of a Fosmid genomic library of Streptomyces roseoflavus Men-myco-93-63. Front. Agric. China, 2011, 5(4): 576-580 DOI:10.1007/s11703-011-1119-x

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References

[1]

Cantor C R, Smith C L, Mathew M K (1988). Pulsed-field gel electrophoresis of very large DNA molecules.Annu Rev Biophys Biophys Chem, 17(1): 287–304

[2]

Di D P (2006). The extraction of the antibiotic and related genes cloning from Streptomyces roseoflavus Men-myco-93-63. Dissertation for the Doctoral Degree, Baoding: Agricultural University of Hebei, 31–46 (in Chinese)

[3]

Gravius B, Cullum J, Hranueli D (1994). High G + C-content DNA markers for pulsed-field gel electrophoresis.Biotechniques, 16(1): 52

[4]

Hopwood D A, Bibb M J, Chater K F, Kieser T, Bruton C J, Kieser H M, Lydiate D J, Smith C P, Ward J M, Schrempf H (1985). Genetic Manipulation of Streptomyces: A Laboratory Manual. Norwich: the John Innes Foundation, 156–157

[5]

Hopwood D A, Kieser T (1990). The Streptomyces genome. In: Drlica K, Riley M, eds. The Bacterial Chromosome. Washington DC: ASM Press, 147–162

[6]

Hradecna Z, Wild J, Szybalski W (1998). Conditionally amplifiable inserts in pBAC vectors.Microb Comp Genom, 3: 58

[7]

Liu D Q (1992). Biological control of Streptomyces scabies and other plant pathogens. Dissertation for the Doctoral Degree, USA: the University of Minnesota, 8–20

[8]

Liu L Q (2006). The study on the chitinase gene and the antibiotic biosynthesis gene cluster of Streptomyces roseoflavus. Dissertation for the Doctoral Degree, Baoding: Agricultural University of Hebei, 48–77 (in Chinese)

[9]

MacNeil T, Gibbons P H (1986). Characterization of the Streptomyces plasmid pVE1.Plasmid, 16(3): 182–194

[10]

Maniloff J (1989). Anomalous values of Mycoplasma genomes sizes determined by pulse-field gel electrophoresis.Nucleic Acids Res, 17(3): 1268

[11]

Meng Q F, Yang W X, Zhang Q L, Liu D Q (2004). Field evaluation of antagonistic Streptomyces Men-myco-93-63 preparation in biocontrol of cotton Verticillium Wilt. In: Proceedings of the 15th International Plant Protection Congress. Beijing: Foreign Languages Press, 153

[12]

Murray M G, Thompson W F (1980). Rapid isolation of high molecular weight plant DNA.Nucleic Acids Res, 8(19): 4321–4326

[13]

Pospiech A, Neumann B (1995). A versatile quick-prep of genomic DNA from gram-positive bacteria.Trends Genet, 11(6): 217–218

[14]

Sambrook J, Fritsch E F, Maniatis T (1989). Molecular Cloning: A Laboratory Manual. 2nd ed. New York: CSH Laboratory Press, 457

[15]

Smith C L, Matsumoto T, Niwa O, Klco S, Fan J B, Yanagida M, Cantor C R (1987). An electrophoretic karyotype for Schizosaccharomyces pombe by pulsed field gel electrophoresis. Nucleic Acids Res, 15(11): 4481–4489

[16]

Sun W M (2009). Study on the antibiotic biosynthetic gene related linear plasmid of Streptomyces roseoflavus Men-myco-93-63. Dissertation for the Masteral Degree, Baoding: Agricultural University of Hebei, 3–4 (in Chinese)

[17]

Sun W M, Guo W, Liu D Q (2008). Efficient detection and analysis of linear plasmid in Streptomyces Men-myco-93-63.Acta Microbiol Sin, 48(12): 1671–1674 (in Chinese)

[18]

Tobias K, Mervyn J B, Mark J B, Keith F C, David A H (2000). Practional Streptomyces Genetics. Norwich: the John Innes Foundation, 170–171

[19]

Wild J, Hradecna Z, Szybalski W (2001). Single-copy/high-copy (SC/HC) pBAC/oriV novel vectors for genomics and gene expression.Plasmid, 45: 142–143

[20]

Wild J, Hradecna Z, Szybalski W (2002). Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clones.Genome Res, 12(9): 1434–1444

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