Cell reprogramming for the creation of patient-specific pluripotent stem cells by defined factors
Huiqun YIN, Hongguo CAO, Yunhai ZHANG, Yong TAO, Xiaorong ZHANG, Heng WANG
Cell reprogramming for the creation of patient-specific pluripotent stem cells by defined factors
Pluripotent stem cells (PSCs), characterized by being able to differentiate into various types of cells, are generally regarded as the most promising sources for cell replacement therapies. However, as typical PSCs, embryonic stem cells (ESCs) are still far away from human clinics so far due to ethical issues and immune rejection response. One way to avoid such problems is to use stem cells derived from autologous somatic cells. Up to date, PSCs could be obtained by reprogramming somatic cells to pluripotent state with approaches including somatic cell nuclear transfer (SCNT), fusion with stem cells, coculture with cells’ extracts, and induction with defined factors. Among these, through reprogramming somatic cells directly by retroviral transduction of transcription factors, induced pluripotent stem (iPS) cells have been successfully generated in both mouse and human recently. These iPS cells shared similar morphology and growth properties to ESCs, could express ESCs marker genes, and could produce adult or germline-competent chimaeras and differentiate into a variety of cell types, including germ cells. Moreover, with iPS technique, patient specific PSCs could be derived more easily from handful somatic cells in human without immune rejection responses innately connected to ESCs. Consequently, generation of iPS cells would be of great help to further understand disease mechanisms, drug screening, and cell transplantation therapies as well. In summary, the recent progress in the study of cell reprogramming for the creation of patient-specific pluripotent stem cells, some existing problems, and research perspectives were suggested.
somatic cells / pluripotent stem cells / iPS cells / reprogramming
[1] |
Adhikary S, Eilers M (2005). Transcriptional regulation and transformation by Myc proteins. Nat Rev Mol Cell Biol, 6: 635-645
CrossRef
Google scholar
|
[2] |
Alon U (2007). Network motifs: theory and experimental approaches. Nat Rev Genet, 8: 450-461
CrossRef
Google scholar
|
[3] |
Aoi T, Yae K, Nakagawa M, Ichisaka T, Okita K, Takahashi K, Chiba T, Yamanaka S (2008). Generation of pluripotent stem cells from adult mouse liver and stomach cells. Science, 321(5889): 699-702
CrossRef
Google scholar
|
[4] |
Blelloch R, Venere M, Yen J, Ramalho-Santos M (2007). Generation of induced pluripotent stem cells in the absence of drug selection. Cell Stem Cell, 1: 245-247
CrossRef
Google scholar
|
[5] |
Boyer L A, Lee T I, Cole M F, Johnstone S E, Levine S S, Zucker J P, Guenther M G, Kumar R M, Murray H L, Jenner R G, Gifford D K, Melton D A, Jaenisch R, Young R A (2005). Core transcriptional regulatory circuitry in human embryonic stem cells. Cell, 122: 947-956
CrossRef
Google scholar
|
[6] |
Brambrink T, Foreman R, Welstead G G, Lengner C J, Wernig M, Suh H, Jaenisch R (2008). Sequential expression of pluripotency markers during direct reprogramming of mouse somatic cells. Cell Stem Cell, 2: 151-159
CrossRef
Google scholar
|
[7] |
Bru T, Clarke C, McGrew M J, Sang H M, Wilmut I, Blow J J (2008). Rapid induction of pluripotency genes after exposure of human somatic cells to mouse ES cell extracts. Exp Cell Res, 314(14): 2634-2642
CrossRef
Google scholar
|
[8] |
Cartwright P, McLean C, Sheppard A, Rivett D, Jones K, Dalton S (2005). LIF/STAT3 controls ES cell self-renewal and pluripotency by a Myc-dependent mechanism. Development, 132: 885-896
CrossRef
Google scholar
|
[9] |
Cawley S, Bekiranov S, Ng H H, Kapranov P, Sekinger E A, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams A J, Wheeler R, Wong B, Drenkow J, Yamanaka M, Patel S, Brubaker S, Tammana H, Helt G, Struhl K, Gingeras T R (2004). Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell, 116: 499-509
CrossRef
Google scholar
|
[10] |
Collas P, Taranger C K (2006a). Toward reprogramming cells to pluripotency. Ernst Schering Res Found Workshop, 60: 47-67
CrossRef
Google scholar
|
[11] |
Collas P, Taranger C K (2006b). Epigenetic reprogramming of nuclei using cell extracts. Stem Cell Rev, 2: 309-317
CrossRef
Google scholar
|
[12] |
Collas P, Taranger C K, Boquest A C, Noer A, Dahl J A (2006). On the way to reprogramming cells to pluripotency using cell-free extracts. Reproductive Bio Medicine, 12: 762-770
|
[13] |
Cowan C A, Atienza J, Melton D A, Eggan K (2005). Nuclear reprogramming of somatic cells after fusion with human embryonic stem cells. Science, 309: 1369-1373
CrossRef
Google scholar
|
[14] |
Darr H, Benvenisty N (2006). Factors involved in self-renewal and pluripotency of embryonic stem cells. Handb Exp Pharmacol, 174: 1-19
|
[15] |
Dimos J T, Rodolfa K T, Niakan K K, Weisenthal L M, Mitsumoto H, Chung W, Croft G F, Saphier G, Leibel R, Goland R, Wichterle H, Henderson C E, Eggan K (2008). Induced pluripotent stem cells generated from patients with ALS can be differentiated into motor neurons. Science, 321(5893): 1218-1221
CrossRef
Google scholar
|
[16] |
Dominguez-Sola D, Ying C Y, Grandori C, Ruggiero L, Chen B, Li M, Galloway D A, Gu W, Gautier J, Dalla-Favera R (2007). Nontranscriptional control of DNA replication by c-Myc. Nature, 448: 445-451
CrossRef
Google scholar
|
[17] |
Fong H, Hohenstein K A, Donovan P J (2008). Regulation of Self-renewal and pluripotency by Sox2 in human embryonic stem cells. Stem Cells, 26(8): 1931-1938
CrossRef
Google scholar
|
[18] |
Grinnemo K H, Sylvén C, Hovatta O, Dellgren G, Corbascio M (2008). Immunogenicity of human embryonic stem cells. Cell Tissue Res, 331: 67-78
CrossRef
Google scholar
|
[19] |
Hanna J, Markoulaki S, Schorderet P, Carey B W, Beard C, Wernig M, Creyghton M P, Steine E J, Cassady J P, Foreman R, Lengner C J, Dausman J A, Jaenisc R (2008). Direct reprogramming of terminally differentiated mature B lymphocytes to pluripotency. Cell, 133: 250-264
CrossRef
Google scholar
|
[20] |
Hanna J, Wernig M, Markoulaki S, Sun C W, Meissner A, Cassady J P, Beard C, Brambrink T, Wu L C, Townes T M, Jaenisch R (2007). Treatment of sickle cell anemia mouse model with iPS cells generated from autologous skin. Science, 318: 1920-1923
|
[21] |
Hansis C, Barreto G, Maltry N, Niehrs C (2004). Nuclear reprogramming of human somatic cells by xenopus egg extract requires BRG1. Curr Biol, 14: 1475-1480
CrossRef
Google scholar
|
[22] |
Harley V R, Lovell-Badge R, Goodfellow P N (1994). Definition of a consensus DNA binding site for SRY. Nucleic Acids Res, 22: 1500-1501
CrossRef
Google scholar
|
[23] |
Hochedlinger K, Jaenisch R (2006). Nuclear reprogramming and pluripotency. Nature, 441: 1061-1067
CrossRef
Google scholar
|
[24] |
Jaenisch R, Young R (2002). Myc suppression of the p21 (Cip1) Cdk inhibitor influences the outcome of the p53 response to DNA damage. Nature, 419: 729-734
CrossRef
Google scholar
|
[25] |
Jaenisch R, Young R (2008). Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming. Cell, 132: 567-582
CrossRef
Google scholar
|
[26] |
Jiang J, Chan Y S, Loh Y H, Cai J, Tong G Q, Lim C A, Robson P, Zhong S, Ng H H (2008). A core Klf circuitry regulates self-renewal of embryonic stem cells. Nat Cell Biol, 10: 353-360
CrossRef
Google scholar
|
[27] |
Kfoury C (2007). Therapeutic cloning: promises and issues. Mcgill J Med, 10: 112-120
|
[28] |
Kim J B, Zaehres H, Wu G, Gentile L, Ko K, Sebastiano V, Araúzo-Bravo M J, Ruau D, Han D W, Zenke M, Schöler H R (2008). Pluripotent stem cells induced from adult neural stem cells by reprogramming with two factors. Nature, 454(7204): 646-650
CrossRef
Google scholar
|
[29] |
Klimanskaya I, Rosenthal N, Lanza R (2008). Derive and conquer: sourcing and differentiating stem cells for therapeutic applications. Nat Rev Drug Discov, 7: 131-142
CrossRef
Google scholar
|
[30] |
Knoepfler P S, Zhang X Y, Cheng P F, Gafken P R, McMahon S B, Eisenman R N (2006). Myc influences global chromatin structure. EMBO J, 25: 2723-2734
CrossRef
Google scholar
|
[31] |
Kohda T, Inoue K, Ogonuki N, Miki H, Naruse M, Kaneko-Ishino T, Ogura A, Ishino F (2005). Variation in gene expression and aberrantly regulated chromosome regions in cloned mice. Biol Reprod, 73: 1302-1311
CrossRef
Google scholar
|
[32] |
Lagarkova M A, Volchkov P Y, Lyakisheva A V, Philonenko E S, Kiselev S L (2006). Diverse epigenetic profile of novel human embryonic stem cell lines. Cell Cycle, 5: 416-420
|
[33] |
Li Y, McClintick J, Zhong L, Edenberg H J, Yoder M C, Chan R J (2005). Murine embryonic stem cell differentiation is promoted by SOCS-3 and inhibited by the zinc finger transcription factor Klf4. Blood, 105: 635-637
CrossRef
Google scholar
|
[34] |
Liao J, Wu Z, Wang Y, Cheng L, Cui C, Gao Y, Chen T, Rao L, Chen, S, Jia N, Dai H, Xin S, Kang J, Pei G, Xiao L (2008). Enhanced efficiency of generating induced pluripotent stem (iPS) cells from human somatic cells by a combination of six transcription factors. Cell Res, 18: 600-603
CrossRef
Google scholar
|
[35] |
Lin T, Chao C, Saito S, Mazur S J, Murphy M E, Appella E, Xu Y (2005). p53 induces differentiation of mouse embryonic stem cells by suppressing Nanog expression. Nat Cell Bio, 7: 165-171
CrossRef
Google scholar
|
[36] |
Lowry W E, Richter L, Yachechko R, Pyle A D, Tchieu J, Sridharan R, Clark A T, Plath K (2008). Generation of human induced pluripotent stem cells from dermal fibroblasts. Proc Natl Acad Sci U S A, 105: 2883-2888
CrossRef
Google scholar
|
[37] |
Maherali N, Sridharan R, Xie W, Utikal J, Eminli S, Arnold K, Stadtfeld M, Yachechko R, Tchieu J, Jaenisch R, Plath K, Hochedlinger K (2007). Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution. Cell Stem Cell, 1: 55-70
CrossRef
Google scholar
|
[38] |
Mali P, Ye Z, Hommond H H, Yu X, Lin J, Chen G, Zou J, Cheng L (2008). Improved efficiency and pace of generating induced pluripotent stem cells from human adult and fetal fibroblasts. Stem Cells, 26(8): 1998-2005
CrossRef
Google scholar
|
[39] |
Matsumura H, Tada M, Otsuji T, Yasuchika K, Nakatsuji N, Surani A, Tada T (2007). Targeted chromosome elimination from ES-somatic hybrid cells. Nat Methods, 4: 23-25
CrossRef
Google scholar
|
[40] |
Meissner A, Wernig M, Jaenisch R (2007). Direct reprogramming of genetically unmodified fibroblasts into pluripotent stem cells. Nat Biotechnol, 25: 1177-1181
CrossRef
Google scholar
|
[41] |
Miller R A, Ruddle F H (1976). Pluripotent teratocarcinoma-thymus somatic cell hybrids, Cell, 9: 45-55
CrossRef
Google scholar
|
[42] |
Nakagawa M, Koyanagi M, Tanabe K, Takahashi K, Ichisaka T, Aoi T, Okita K, Mochiduki Y, Takizawa N, Yamanaka S (2008). Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts. Nat Biotechno, 26: 101-106
CrossRef
Google scholar
|
[43] |
Nakatake Y, Fukui N, Iwamats Y, Masui S, Takahashi K, Yagi R, Yagi K, Miyazaki J, Matoba R, Ko M S, Niwa H (2006). Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol Cell Biol, 26(20): 7772-7782
CrossRef
Google scholar
|
[44] |
Neri T, Monti M, Rebuzzini P, Merico V, Garagna S, Redi C A, Zuccotti M (2007). Mouse fibroblasts are reprogrammed to Oct-4 and Rex-1 gene expression and alkaline phosphatase activity by embryonic stem cell extracts. Cloning Stem Cells, 9: 394-406
CrossRef
Google scholar
|
[45] |
Okamoto K, Okazawa H, Okuda A, Sakai M, Muramatsu M, Hamada H (1990). A novel octamer binding transcription factor is differentially expressed in mouse embryonic cells. Cell, 60: 461-472
CrossRef
Google scholar
|
[46] |
Okita K, Ichisaka T, Yamanaka S (2007). Generation of germline-competent induced pluripotent stem cells. Nature, 448: 313-317
CrossRef
Google scholar
|
[47] |
Park I H, Daley G Q (2007). Debugging cellular reprogramming. Nat Cell Biol, 9: 871-873
CrossRef
Google scholar
|
[48] |
Park I H, Zhao R, West J A, Yabuuchi A, Huo H, Ince T A, Lerou P H, Lensch M W, Daley G Q (2008). Reprogramming of human somatic cells to pluripotency with defined factors. Nature, 451: 141-146
CrossRef
Google scholar
|
[49] |
Pasquinelli A E, Hunter S, Bracht J (2005). MicroRNAs: a developing story. Curr Opin Genet Dev, 15: 200-205
CrossRef
Google scholar
|
[50] |
Pesce M, Gross M K, Scholer H R (1998). In line with our ancestors: Oct-4 and the mammalian germ. Bioessays, 20: 722-732
CrossRef
Google scholar
|
[51] |
Pochampally R R, Neville B T, Schwarz E J, Li M M, Prockop D J (2004). Rat adult stem cells (marrow stromal cells) engraft and differentiate in chick embryos without evidence of cell fusion. Proc Natl Acad Sci U S A, 101: 9282-9285
CrossRef
Google scholar
|
[52] |
Qin D, Li W, Zhang J, Pei D (2007). Direct generation of ES-like cells from unmodified mouse embryonic fibroblasts by Oct4/Sox2/Myc/Klf4. Cell Res, 17: 959-962
CrossRef
Google scholar
|
[53] |
Rosner M H, Vigano M A, Ozato K, Timmons P M, Poirier F, Rigby P W, Staudt L M (1990). A POU-domain transcription factor in early stem cells and germ cells of the mammalian embryo. Nature, 345: 686-692
CrossRef
Google scholar
|
[54] |
Rowland B D, Bernards R, Peeper D S (2005). The KLF4 tumour suppressor is a transcriptional repressor of p53 that acts as a context-dependent oncogene. Nat Cell Biol, 7: 1074-1082
CrossRef
Google scholar
|
[55] |
Silva J, Chambers I, Pollard S, Smith A (2006). Nanog promotes transfer of pluripotency after cell fusion. Nature, 441: 997-1001
CrossRef
Google scholar
|
[56] |
Smith S L, Everts R E, Tian X C, Du F, Sung L Y, Rodriguez-Zas S L, Jeong B S, Renard J P, Lewin H A, Yang X (2005). Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proc Natl Acad Sci U S A, 102: 17582-17587
CrossRef
Google scholar
|
[57] |
Sonia S, Michel P (2007). Oct-3/4: Not just a gatekeeper of pluripotency for embryonic stem cell, a cell fate instructor through a gene dosage effect. Cell Cycle, 6: 8-10
|
[58] |
Stadtfeld M, Brennand K, Hochedlinger K (2008b). Reprogramming of pancreatic Beta cells into induced pluripotent stem cells. Curr Biol, 18: 890-894
CrossRef
Google scholar
|
[59] |
Stadtfeld M, Maherali N, Breault D T, Hochedlinger K (2008a). Defining molecular cornerstones during fibroblast to iPS cell reprogramming in mouse. Cell Stem Cell, 2: 230-240
CrossRef
Google scholar
|
[60] |
Tada M, Morizane A, Kimura H, Kawasaki H, Ainscough J F, Sasai Y, Nakatsuji N, Tada T (2003). Pluripotency of reprogrammed somatic genomes in embryonic stem hybrid cells. Dev Dyn, 227: 504-510
CrossRef
Google scholar
|
[61] |
Tada M, Tada T, Lefebvre L, Barton S C, Surani, M A (1997). Embryonic germ cells induce epigenetic reprogramming of somatic nucleus in hybrid cells. EMBO J, 16: 6510-6520
CrossRef
Google scholar
|
[62] |
Takahashi K, Okita K, Nakagawa M, Yamanaka S (2007a). Induction of pluripotent stem cells from fibroblast cultures. Nat Protoc, 2: 3081-3089
CrossRef
Google scholar
|
[63] |
Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, Tomoda K, Yamanaka S (2007b). Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell, 131: 861-872
CrossRef
Google scholar
|
[64] |
Takahashi K, Yamanaka S (2006). Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell, 126: 663-676
CrossRef
Google scholar
|
[65] |
Tateishi K, He J, Taranova O, Liang G, Liang G, D'Alessio A C, Zhang Y (2008). Generation of insulin-secreting islet-like clusters from human skin fibroblasts. J Biol Chem, 283(46): 31601-31607
|
[66] |
Tokuzawa Y, Kaiho E, Maruyama M, Takahashi K, Mitsui K, Maeda M, Niwa H, Yamanaka S (2003). Fbx15 is a novel target of Oct3/4 but is dispensable for embryonic stem cell self-renewal and mouse development. Mol Cell Biol, 23: 2699-2708
CrossRef
Google scholar
|
[67] |
Wernig M, Meissner A, Cassady J P, Jaenisch R (2008). c-Myc is dispensable for direct reprogramming of mouse fibroblasts. Cell Stem Cell, 2: 10-12
CrossRef
Google scholar
|
[68] |
Wernig M, Meissner A, Foreman R, Brambrink T, Ku M, Hochedlinger K, Bernstein B E, Jaenisch R (2007). In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state. Nature, 448: 318-324
CrossRef
Google scholar
|
[69] |
Wernig M, Zhao J P, Pruszak J, Hedlund E, Fu D, Soldner F, Broccoli V, Constantine-Paton M, Isacson O, Jaenisch R (2008). Neurons derived from reprogrammed fibroblasts functionally integrate into the fetal brain and improve symptoms of rats with Parkinson's disease. Proc Natl Acad Sci U S A, 105: 5856-5861
CrossRef
Google scholar
|
[70] |
Wood H B, Episkopou V (1999). Comparative expression of the mouse Sox1, Sox2 and Sox3 genes from pre-gastrulation to early somite stages. Mech Dev, 86: 197-201
CrossRef
Google scholar
|
[71] |
Yu J, Vodyanik M A, Smuga-Otto K, Antosiewicz-Bourget J, Frane J L, Tian S, Nie J, Jonsdottir G A, Ruotti V, Stewart R, Slukvin I I, Thomson J A (2007). Induced pluripotent stem cell lines derived from human somatic cells. Science, 318: 1917-1920
CrossRef
Google scholar
|
[72] |
Zeineddine D, Papadimou E, Chebli K, Gineste M, Liu J, Grey C, Thurig S, Behfar A, Wallace V A, Skerjanc I S, Pucéat M (2006). Oct-3/4 dose dependently regulates specification of embryonic stem cells toward a cardiac lineage and early heart development. Dev Cell, 11: 535-546
CrossRef
Google scholar
|
/
〈 | 〉 |