L3MBTL4 methylation is a sensitive marker of DNA-PK inhibitor in pancreatic cancer

Yuanxin Yao , Yuan Li , Aiai Gao , Cheng Zhu , Ruijie Wang , Yazhuo Li , Xiaomo Su , Meiying Zhang , Mingzhou Guo

Exploration of Targeted Anti-tumor Therapy ›› 2026, Vol. 7 ›› Issue (1) : 1002382

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Exploration of Targeted Anti-tumor Therapy ›› 2026, Vol. 7 ›› Issue (1) :1002382 DOI: 10.37349/etat.2026.1002382
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L3MBTL4 methylation is a sensitive marker of DNA-PK inhibitor in pancreatic cancer
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Abstract

Aim: The purpose is to explore the mechanism and new therapeutic strategy of lethal 3 malignant brain tumor like 4 L3MBTL4) gene in pancreatic ductal adenocarcinoma (PDAC).

Methods: Immunoprecipitation, siRNA knockdown, immunohistochemistry, homologous recombination (HR) and non-homologous end joining (NHEJ) reporter assays, comet assays, and a xenograft mouse model were employed.

Results: L3MBTL4 was methylated in 16.3% (7/43) of intraductal papillary mucinous neoplasms, 19.0% (4/21) of mucinous cystic neoplasm, and 28.2% (84/298) of PDAC, and its expression was regulated by promoter region methylation. L3MBTL4 methylation was significantly associated with tumor differentiation and tumor size. The expression of L3MBTL4 inhibited cell proliferation, colony formation, and induced apoptosis and G1/S phase arrest. L3MBTL4 activated ATM/CHK2 and inhibited NHEJ signaling by interacting with Ku70. Loss of L3MBTL4 increased the sensitivity of PDAC cells to NU7441 both in vitro and in vivo.

Conclusions: L3MBTL4 is a new component of NHEJ signaling and epigenetic silencing of L3MBTL4 sensitizes PDAC cells to DNA-PK inhibitors, providing a potential new therapeutic strategy.

Keywords

L3MBTL4 / DNA methylation / synthetic lethality / DNA damage repair / NU7441 / pancreatic cancer

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Yuanxin Yao, Yuan Li, Aiai Gao, Cheng Zhu, Ruijie Wang, Yazhuo Li, Xiaomo Su, Meiying Zhang, Mingzhou Guo. L3MBTL4 methylation is a sensitive marker of DNA-PK inhibitor in pancreatic cancer. Exploration of Targeted Anti-tumor Therapy, 2026, 7 (1) : 1002382 DOI:10.37349/etat.2026.1002382

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References

[1]

GBD 2017 Pancreatic Cancer Collaborators. The global, regional, and national burden of pancreatic cancer and its attributable risk factors in 195 countries and territories, 1990-2017: a systematic analysis for the Global Burden of Disease Study 2017. Lancet Gastroenterol Hepatol. 2019; 4: 934-47.

[2]

Klein AP. Pancreatic cancer epidemiology: understanding the role of lifestyle and inherited risk factors. Nat Rev Gastroenterol Hepatol. 2021; 18: 493-502.

[3]

Ren S, Qin B, Daniels MJ, Zeng L, Tian Y, Wang Z. Developing and validating a computed tomography radiomics strategy to predict lymph node metastasis in pancreatic cancer. World J Radiol. 2025; 17: 109373.

[4]

Li Z, Mo F, Guo K, Ren S, Wang Y, Chen Y, et al. Nanodrug-bacteria conjugates-mediated oncogenic collagen depletion enhances immune checkpoint blockade therapy against pancreatic cancer. Med. 2024; 5: 348-67.e7.

[5]

Ren S, Song L, Zhao R, Tian Y, Wang Z. Serum exosomal hsa-let-7f-5p: A potential diagnostic biomarker for metastatic pancreatic cancer detection. World J Gastroenterol. 2025; 31: 109500.

[6]

Du Q, Zhang M, Gao A, He T, Guo M. Epigenetic silencing ZSCAN23 promotes pancreatic cancer growth by activating Wnt signaling. Cancer Biol Ther. 2024; 25: 2302924.

[7]

Wu Y, Sun R, Zengin G, Ren S, Li M. Tumor Organoids: Breakthroughs in Clinical Decision Making, Drug Development, and Translational Advances Beyond Conventional Models. Med Research. 2026; 2: 26-40.

[8]

Halbrook CJ, Lyssiotis CA, Pasca di Magliano M, Maitra A. Pancreatic cancer: Advances and challenges. Cell. 2023; 186: 1729-54.

[9]

Groot VP, Rezaee N, Wu W, Cameron JL, Fishman EK, Hruban RH, et al. Patterns, Timing, and Predictors of Recurrence Following Pancreatectomy for Pancreatic Ductal Adenocarcinoma. Ann Surg. 2018; 267: 936-45.

[10]

Murai J, Pommier Y. BRCAness, Homologous Recombination Deficiencies, and Synthetic Lethality. Cancer Res. 2023; 83: 1173-4.

[11]

Ryan CJ, Devakumar LPS, Pettitt SJ, Lord CJ. Complex synthetic lethality in cancer. Nat Genet. 2023; 55: 2039-48.

[12]

Huang A, Garraway LA, Ashworth A, Weber B. Synthetic lethality as an engine for cancer drug target discovery. Nat Rev Drug Discov. 2020; 19: 23-38.

[13]

Setton J, Zinda M, Riaz N, Durocher D, Zimmermann M, Koehler M, et al. Synthetic Lethality in Cancer Therapeutics: The Next Generation. Cancer Discov. 2021; 11: 1626-35.

[14]

Hu ZI, O’Reilly EM. Therapeutic developments in pancreatic cancer. Nat Rev Gastroenterol Hepatol. 2024; 21: 7-24.

[15]

Kozłowska M, Mik M, Nowicki M, Śliwińska A. DNA Damage and Repair in Pancreatic Cancer-The Latest Findings. Int J Mol Sci. 2025; 26: 10106.

[16]

Selvi S, Real CM, Gentiluomo M, Balounova K, Vokacova K, Cumova A, et al. Genomic instability, DNA damage response and telomere homeostasis in pancreatic cancer. Semin Cancer Biol. 2025; 113: 59-73.

[17]

Byrum AK, Vindigni A, Mosammaparast N. Defining and Modulating ‘BRCAness’. Trends Cell Biol. 2019; 29: 740-51.

[18]

Ma J, Zhou Y, Pan P, Yu H, Wang Z, Li LL, et al. TRABID overexpression enables synthetic lethality to PARP inhibitor via prolonging 53BP1 retention at double-strand breaks. Nat Commun. 2023; 14: 1810.

[19]

Xiao M, Tang R, Pan H, Yang J, Tong X, Xu H, et al. TPX2 serves as a novel target for expanding the utility of PARPi in pancreatic cancer through conferring synthetic lethality. Gut. 2025; 74: 410-23.

[20]

Guo M, Peng Y, Gao A, Du C, Herman JG. Epigenetic heterogeneity in cancer. Biomark Res. 2019; 7: 23.

[21]

Gao A, Guo M. Epigenetic based synthetic lethal strategies in human cancers. Biomark Res. 2020; 8: 44.

[22]

Oleksiewicz U, Machnik M. Causes, effects, and clinical implications of perturbed patterns within the cancer epigenome. Semin Cancer Biol. 2022; 83: 15-35.

[23]

Mondal P, Natesh J, Penta D, Meeran SM. Progress and promises of epigenetic drugs and epigenetic diets in cancer prevention and therapy: A clinical update. Semin Cancer Biol. 2022; 83: 503-22.

[24]

Yan W, Herman JG, Guo M. Epigenome-based personalized medicine in human cancer. Epigenomics. 2016; 8: 119-33.

[25]

Hsu C, Konner JA, Gounder MM. Epigenetic Therapy in a Rare Ovarian Cancer - A Double-Edged Sword. N Engl J Med. 2024; 391: 770-2.

[26]

Hu Y, Guo M. Synthetic lethality strategies: Beyond BRCA1/2 mutations in pancreatic cancer. Cancer Sci. 2020; 111: 3111-21.

[27]

Gao A, Bai P, Zhang M, Yao Y, Herman JG, Guo M. RASSF1A promotes ATM signaling and RASSF1A methylation is a synthetic lethal marker for ATR inhibitors. Epigenomics. 2023; 15: 1205-20.

[28]

Liu F, Gao A, Zhang M, Li Y, Zhang F, Herman JG, et al. Methylation of FAM110C is a synthetic lethal marker for ATR/CHK1 inhibitors in pancreatic cancer. J Transl Int Med. 2024; 12: 274-87.

[29]

Yao Y, Lv H, Zhang M, Li Y, Herman JG, Brock MV, et al. Epigenetic silencing of BEND4, a novel DNA damage repair gene, is a synthetic lethal marker for ATM inhibitor in pancreatic cancer. Front Med. 2024; 18: 721-34.

[30]

Eryilmaz J, Pan P, Amaya MF, Allali-Hassani A, Dong A, Adams-Cioaba MA, et al. Structural studies of a four-MBT repeat protein MBTD1. PLoS One. 2009; 4: e7274.

[31]

Huang X, Chen Y, Xiao Q, Shang X, Liu Y. Chemical inhibitors targeting histone methylation readers. Pharmacol Ther. 2024; 256: 108614.

[32]

Nowsheen S, Aziz K, Aziz A, Deng M, Qin B, Luo K, et al. L3MBTL2 orchestrates ubiquitin signalling by dictating the sequential recruitment of RNF8 and RNF168 after DNA damage. Nat Cell Biol. 2018; 20: 455-64.

[33]

Acs K, Luijsterburg MS, Ackermann L, Salomons FA, Hoppe T, Dantuma NP. The AAA-ATPase VCP/p97 promotes 53BP1 recruitment by removing L3MBTL1 from DNA double-strand breaks. Nat Struct Mol Biol. 2011; 18: 1345-50.

[34]

Addou-Klouche L, Adélaïde J, Finetti P, Cervera N, Ferrari A, Bekhouche I, et al. Loss, mutation and deregulation of L3MBTL4 in breast cancers. Mol Cancer. 2010; 9: 213.

[35]

Thomas AM, Santarsiero LM, Lutz ER, Armstrong TD, Chen Y, Huang L, et al. Mesothelin-specific CD8(+) T cell responses provide evidence of in vivo cross-priming by antigen-presenting cells in vaccinated pancreatic cancer patients. J Exp Med. 2004; 200: 297-306.

[36]

Zheng L, Foley K, Huang L, Leubner A, Mo G, Olino K, et al. Tyrosine 23 phosphorylation-dependent cell-surface localization of annexin A2 is required for invasion and metastases of pancreatic cancer. PLoS One. 2011; 6: e19390.

[37]

Du W, Gao A, Herman JG, Wang L, Zhang L, Jiao S, et al. Methylation of NRN1 is a novel synthetic lethal marker of PI3K-Akt-mTOR and ATR inhibitors in esophageal cancer. Cancer Sci. 2021; 112: 2870-83.

[38]

Yang W, Guo C, Herman JG, Zhu C, Lv H, Su X, et al. Epigenetic silencing of JAM3 promotes esophageal cancer development by activating Wnt signaling. Clin Epigenetics. 2022; 14: 164.

[39]

Olive PL, Banáth JP. The comet assay: a method to measure DNA damage in individual cells. Nat Protoc. 2006; 1: 23-9.

[40]

Zhang Z, Li Y, Shi R, Jia C, Xu S, Zhu G, et al. L3MBTL1, a polycomb protein, promotes Osimertinib acquired resistance through epigenetic regulation of DNA damage response in lung adenocarcinoma. Cell Death Dis. 2024; 15: 649.

[41]

Perkhofer L, Gout J, Roger E, Kude de Almeida F, Baptista Simões C, Wiesmüller L, et al. DNA damage repair as a target in pancreatic cancer: state-of-the-art and future perspectives. Gut. 2021; 70: 606-17.

[42]

Perkhofer L, Illing A, Gout J, Frappart P, Kleger A. Precision medicine meets the DNA damage response in pancreatic cancer. Oncoscience. 2018; 5: 6-8.

[43]

Esteller M, Dawson MA, Kadoch C, Rassool FV, Jones PA, Baylin SB. The Epigenetic Hallmarks of Cancer. Cancer Discov. 2024; 14: 1783-809.

[44]

Li H, Yang W, Zhang M, He T, Zhou F, Herman JG, et al. Methylation of TMEM176A, a key ERK signaling regulator, is a novel synthetic lethality marker of ATM inhibitors in human lung cancer. Epigenomics. 2021; 13: 1403-19.

[45]

Zhou J, Zhang M, Gao A, Zhu C, He T, Herman JG, et al. Epigenetic silencing schlafen-11 sensitizes esophageal cancer to ATM inhibitor. World J Gastrointest Oncol. 2024; 16: 2060-73.

[46]

Zhang M, Li X, Herman JG, Gao A, Wang Q, Yao Y, et al. Methylation of NRIP3 Is a Synthetic Lethal Marker for Combined PI3K and ATR/ATM Inhibitors in Colorectal Cancer. Clin Transl Gastroenterol. 2024; 15: e00682.

[47]

Ye B, Li D, Li X, Hao J, Liu D, Yu H, et al. Methylation synthetic lethality: Exploiting selective drug targets for cancer therapy. Cancer Lett. 2024; 597: 217010.

[48]

Park I, Jeon M, Kim H, Lee JM. Coordinated methyl readers: Functional communications in cancer. Semin Cancer Biol. 2022; 83: 88-99.

[49]

Calheiros J, Silva R, Barbosa F, Morais J, Moura SR, Almeida S, et al. A first-in-class inhibitor of homologous recombination DNA repair counteracts tumour growth, metastasis and therapeutic resistance in pancreatic cancer. J Exp Clin Cancer Res. 2025; 44: 129.

[50]

Tan J, Sun X, Zhao H, Guan H, Gao S, Zhou P. Double-strand DNA break repair: molecular mechanisms and therapeutic targets. MedComm (2020). 2023; 4: e388.

[51]

Pilié PG, Tang C, Mills GB, Yap TA. State-of-the-art strategies for targeting the DNA damage response in cancer. Nat Rev Clin Oncol. 2019; 16: 81-104.

[52]

Bergstrand S, O’Brien EM, Coucoravas C, Hrossova D, Peirasmaki D, Schmidli S, et al. Small Cajal body-associated RNA 2 (scaRNA2) regulates DNA repair pathway choice by inhibiting DNA-PK. Nat Commun. 2022; 13: 1015.

[53]

Huang R, Zhou P. DNA damage repair: historical perspectives, mechanistic pathways and clinical translation for targeted cancer therapy. Signal Transduct Target Ther. 2021; 6: 254.

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