Development of fermentation and respiration bioprocesses for efficient nitrogen removal through microbial catabolism

Ji Qi , Xiaoyan Ma , Jian Chen , Qiwei Guo , Fangang Meng

Engineering Microbiology ›› 2026, Vol. 6 ›› Issue (3) : 100293

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Engineering Microbiology ›› 2026, Vol. 6 ›› Issue (3) :100293 DOI: 10.1016/j.engmic.2026.100293
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Development of fermentation and respiration bioprocesses for efficient nitrogen removal through microbial catabolism
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Abstract

Conventional activated sludge processes are primarily designed for nitrogen and phosphorus removal, with carbon transformation regarded as a concomitant process that supports downstream denitrification rather than a proactively regulated process. Inspired by the metabolic division of labor in gut ecosystems, we proposed and validated a metabolism-guided strategy for an experimental membrane bioreactor (MBR-E) with a prefermentation unit that couples upstream fermentation with downstream denitrification to restructure carbon flux toward more bioavailable electron donors for nitrogen removal. Long-term operation showed that MBR-E achieved significantly lower effluent total nitrogen (7.9 ± 2.4 mg/L) compared with the control MBR system (MBR-C, 12.3 ± 3.5 mg/L), which was attributed to its elevated specific denitrification rate. Influent organics were efficiently converted into volatile fatty acids (VFAs) via fermentation and shortening hydraulic retention time from 0.67 h to 0.5 h shifted VFA composition from propionate/butyrate dominance to acetate enrichment. Further, 16S rRNA gene sequencing demonstrated that functional denitrifiers and nitrifiers were selectively enriched in MBR-E. Co-occurrence network analysis revealed strengthened cooperative interactions and tighter functional coupling between carbon degradation and nitrogen removal in MBR-E. Overall, this study demonstrates that fermentation-driven carbon reprogramming can effectively regulate downstream respiratory pathways and reshape the microbial community structure, providing a novel approach for efficient nitrogen removal from low-carbon/nitrogen wastewater.

Keywords

Biological nitrogen removal / Fermentation / Volatile fatty acids / Microbial metabolism / Microbial community

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Ji Qi, Xiaoyan Ma, Jian Chen, Qiwei Guo, Fangang Meng. Development of fermentation and respiration bioprocesses for efficient nitrogen removal through microbial catabolism. Engineering Microbiology, 2026, 6 (3) : 100293 DOI:10.1016/j.engmic.2026.100293

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