Heterologous expression of Vibrio natriegens transporters enhances the growth of Escherichia coli and Bacillus subtilis on glutamate

Fei Han , Qian Wang , Yiheng Wang , Xingyu Liu , Yifan Zhang , Kunlong Liang , Xiongfeng Dai , Manlu Zhu

Engineering Microbiology ›› 2026, Vol. 6 ›› Issue (1) : 100264

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Engineering Microbiology ›› 2026, Vol. 6 ›› Issue (1) :100264 DOI: 10.1016/j.engmic.2026.100264
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Heterologous expression of Vibrio natriegens transporters enhances the growth of Escherichia coli and Bacillus subtilis on glutamate
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Abstract

Bacterial growth modulation is crucial in microbial synthetic biology. In this study, we found that glutamate is an extremely poor carbon source for Escherichia coli and Bacillus subtilis. The slow growth on glutamate can be effectively overcome by the heterologous expression of glutamate transporters from Vibrio natriegens. Our results revealed that cross-species substrate transporters could be employed to shift bacterial cellular resource allocation, offering a potential genetic strategy for modulating microbial biomass growth.

Keywords

Cell growth / Vibrio natriegens / Resource allocation / Glutamate transporters / Synthetic biology

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Fei Han, Qian Wang, Yiheng Wang, Xingyu Liu, Yifan Zhang, Kunlong Liang, Xiongfeng Dai, Manlu Zhu. Heterologous expression of Vibrio natriegens transporters enhances the growth of Escherichia coli and Bacillus subtilis on glutamate. Engineering Microbiology, 2026, 6(1): 100264 DOI:10.1016/j.engmic.2026.100264

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Data availability statement

All data generated or analysed during this study are included in this published article and its supplementary information files or are available upon request. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the iProX partner repository with the dataset identifier: PXD069464.

CRediT authorship contribution statement

Fei Han: Methodology, Investigation, Formal analysis, Data curation. Qian Wang: Methodology, Investigation, Formal analysis. Yiheng Wang: Investigation. Xingyu Liu: Investigation. Yifan Zhang: Investigation. Kunlong Liang: Investigation. Xiongfeng Dai: Writing - review & editing, Writing - original draft, Supervision, Funding acquisition, Conceptualization. Manlu Zhu: Writing - review & editing, Writing - original draft, Supervision, Funding acquisition, Conceptualization.

Declaration of competing interest

The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Xiongfeng Dai reports financial support was provided by National Natural Science Foundation of China. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

References

[1]

A. Goszcz, K. Furtak, R. Stasiuk, J. Wójtowicz, M. Musiał owski, M. Schiavon, K. D ębiec-Andrzejewska, Bacterial osmoprotectants-a way to survive in saline con- ditions and potential crop allies, FEMS Microbiol. Rev. (2025) 49.

[2]

G. Zhang, X. Ren, X. Liang, Y. Wang, D. Feng, Y. Zhang, M. Xian, H. Zou, Improving the microbial production of amino acids: from conventional approaches to recent trends, Biotechnol. Bioprocess. Eng. 26 (2021) 708-727.

[3]

J. Wang, W. Ma, J. Zhou, X. Wang, Microbial chassis design and engineering for production of amino acids used in food industry, Syst. Microbiol. Biomanuf. 3 (2023) 28-48.

[4]

C. Feehily, K.A. Karatzas, Role of glutamate metabolism in bacterial responses to- wards acid and other stresses, J. Appl. Microbiol. 114 (2013) 11-24.

[5]

D. Yan, Protection of the glutamate pool concentration in enteric bacteria, Proc. Natl. Acad. Sci. U S. A 104 (2007) 9475-9480.

[6]

V.F. Wendisch, Microbial production of amino acids and derived chemicals: syn- thetic biology approaches to strain development, Curr. Opin. Biotechnol. 30 (2014) 51-58.

[7]

A. Su Q. Yu Y. Luo J. Yang E. Wang H. Yuan, Metabolic engineering of microorganisms for the production of multifunctional non-protein amino acids: 𝛾-aminobutyric acid and 𝛿-aminolevulinic acid, Microb. Biotechnol. 14 (2021) 2279-2290.

[8]

R. Reyes-Lamothe, D.J. Sherratt, The bacterial cell cycle, chromosome inheritance and cell growth, Nat. Rev. Microbiol. 17 (2019) 467-478.

[9]

F.J. Bruggeman, R. Planqué, D. Molenaar, B. Teusink, Searching for principles of microbial physiology, FEMS Microbiol. Rev. 44 (2020) 821-844.

[10]

M. Scott, T. Hwa, Shaping bacterial gene expression by physiological and proteome allocation constraints, Nat. Rev. Microbiol. 21 (2023) 327-342.

[11]

M. Zhu X. Dai, Shaping of microbial phenotypes by trade-offs, Nat. Commun. 15 (2024) 4238.

[12]

K. Shabestary, S. Klamt, H. Link, R. Mahadevan, R. Steuer, E.P. Hudson, Design of microbial catalysts for two-stage processes, Nat Rev Bioeng 2 (2024) 1039-1055.

[13]

M. Dragosits, D. Mattanovich, Adaptive laboratory evolution - principles and appli- cations for biotechnology, Microb. Cell Fact. 12 (2013) 64.

[14]

W. Peng, X. Zhang, Q. Qi, Q. Liang, Advances in adaptive laboratory evolution ap- plications for Escherichia coli, Synth. Syst. Biotechnol. 10 (2025) 1306-1321.

[15]

M.T. Weinstock, E.D. Hesek, C.M. Wilson, D.G. Gibson, Vibrio natriegens as a fast-growing host for molecular biology, Nat. Methods 13 (2016) 849-851.

[16]

H.H. Lee, N. Ostrov, B.G. Wong, M.A. Gold, A.S. Khalil, G.M. Church, Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi, Nat. Mi- crobiol. 4 (2019) 1105-1113.

[17]

J. Hoff, B. Daniel, D. Stukenberg, B.W. Thuronyi, T. Waldminghaus, G. Fritz, Vibrio natriegens: an ultrafast-growing marine bacterium as emerging synthetic biology chassis, Env. Microbiol 22 (2020) 4394-4408.

[18]

M. Zhu M. Mori T. Hwa X. Dai, Distantly related bacteria share a rigid proteome allocation strategy with flexible enzyme kinetics, Proc. Natl. Acad. Sci. u S. a 122 (2025) e2427091122.

[19]

C. Su H. Cui W. Wang Y. Liu Z. Cheng C. Wang M. Yang L. Qu Y. Li Y. Cai, et al., Bioremediation of complex organic pollutants by engineered Vibrio natriegens, Nature 642 (2025) 1024-1033.

[20]

L. Reitzer, Catabolism of amino acids and related compounds, EcoSal. Plus. 1 (2005).

[21]

C. You H. Okano S. Hui Z. Zhang M. Kim C.W. Gunderson Y.P. Wang P. Lenz D. Yan T. Hwa, Coordination of bacterial proteome with metabolism by cyclic AMP signalling, Nature 500 (2013) 301-306.

[22]

R. Lutz, H. Bujard, Independent and tight regulation of transcriptional units in Es- cherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements, Nu- cleic. Acids. Res. 25 1997) 1203-1210.

[23]

N.M. Belliveau, G. Chure, C.L. Hueschen, H.G. Garcia, J. Kondev, D.S. Fisher, J.A. Theriot, R. Phillips, Fundamental limits on the rate of bacterial growth and their influence on proteomic composition, Cell Syst. 12 (2021) 924-944 e922.

[24]

M. Zhu Q. Wang H. Mu F. Han Y. Wang X. Dai, A fitness trade-off between growth and survival governed by Spo0A-mediated proteome allocation constraints in Bacil- lus subtilis, Sci. Adv. 9 (2023) eadg9733.

[25]

W. Liebermeister, E. Noor, A. Flamholz, D. Davidi, J. Bernhardt, R. Milo, Visual account of protein investment in cellular functions, Proc. Natl. Acad. Sci. u S. a 111 (2014) 8488-8493.

[26]

C. Wu M. Mori M. Abele A. Banaei-Esfahani Z. Zhang H. Okano R. Aebersold C. Ludwig T. Hwa, Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves, Nat. Microbiol. 8 (2023) 347-359.

[27]

M. Mori, Z. Zhang, A. Banaei-Esfahani, J.B. Lalanne, H. Okano, B.C. Collins, A. Schmidt, O.T. Schubert, D.S. Lee, G.W. Li, et al., From coarse to fine: the ab- solute Escherichia coli proteome under diverse growth conditions, Mol. Syst. Biol. 17 (2021) e9536.

[28]

B. Görke, J. Stülke, Carbon catabolite repression in bacteria: many ways to make the most out of nutrients, Nat. Rev. Microbiol. 6 (2008) 613-624.

[29]

X. Yang, X. Huo, Y. Tang, M. Zhao, Y. Tao, J. Huang, C. Ke, Integrating enzyme evolution and metabolic engineering to improve the productivity of Γ-aminobutyric acid by whole-cell biosynthesis in Escherichia coli, J. Agric. Food Chem. 71 (2023) 4656-4664.

[30]

V.D. Pham, S. Somasundaram, S.H. Lee, S.J. Park, S.H. Hong, Engineering the in- tracellular metabolism of Escherichia coli to produce gamma-aminobutyric acid by co-localization of GABA shunt enzymes, Biotechnol. Lett. 38 (2016) 321-327.

[31]

X. Chen, S. Li, L. Liu, Engineering redox balance through cofactor systems, Trends Biotechnol. 32 (2014) 337-343.

[32]

R.D. Sleator, C. Hill, Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence, FEMS Microbiol. Rev. 26 (2002) 49-71.

[33]

N. Yan, Structural investigation of the proton-coupled secondary transporters, Curr. Opin. Struct. Biol. 23 (2013) 483-491.

[34]

W.N. Konings, Microbial transport: adaptations to natural environments, Antonie Leeuwenhoek 90 (2006) 325-342.

[35]

M. Zhu Y. Wang H. Mu F. Han Q. Wang Y. Pei X. Wang X. Dai, Plasmid-encoded phosphatase RapP enhances cell growth in non-domesticated Bacillus subtilis strains, Nat. Commun. 15 (2024) 9567.

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