Engineering thermotolerant microbial strains via TrRCC1 overexpression for efficient bioethanol production

Tingting Chen , Xiao He , Xinyan Zhang , Tian Tian , Jian Cheng , Tingting Long , Yonghao Li

Engineering Microbiology ›› 2025, Vol. 5 ›› Issue (2) : 100212

PDF (1702KB)
Engineering Microbiology ›› 2025, Vol. 5 ›› Issue (2) : 100212 DOI: 10.1016/j.engmic.2025.100212
Original Research Article
research-article

Engineering thermotolerant microbial strains via TrRCC1 overexpression for efficient bioethanol production

Author information +
History +
PDF (1702KB)

Abstract

Efficient conversion of corn stover to bioethanol via simultaneous saccharification and fermentation (SSF) is a promising strategy for sustainable biofuel production. A major current barrier to this process is the limited thermotolerance of Saccharomyces cerevisiae, which hampers its performance under the high-temperature conditions required for efficient SSF. In this study, we identified TrRCC1, a gene from Trichoderma reesei, as a candidate for improving microbial stress resistance. Overexpression of TrRCC1 in both T. reesei Rut C30 and S. cerevisiae BY4741 significantly enhanced thermotolerance. In T. reesei Rut C30, TrRCC1 overexpression improved heat resistance and increased cellulase production by 2.5-fold compared to the wild-type strain. In S. cerevisiae BY4741, TrRCC1 overexpression resulted in enhanced thermotolerance and a 21.8 % increase in ethanol production during SSF of corn stover. The ethanol concentration achieved in the SSF process with TrRCC1-overexpressing S. cerevisiae was 44.1 g/L, which was a notable improvement over control strain production. These findings highlight the potential of TrRCC1 as a key gene for engineering microbial strains with improved stress resistance to enhance the efficiency of bioethanol production from lignocellulosic biomass.

Keywords

Trichodema reesei / RCC1 / Saccharomyces cerevisiae / Bioethanol / Temperature tolerance / Simultaneous saccharification and fermentation

Cite this article

Download citation ▾
Tingting Chen, Xiao He, Xinyan Zhang, Tian Tian, Jian Cheng, Tingting Long, Yonghao Li. Engineering thermotolerant microbial strains via TrRCC1 overexpression for efficient bioethanol production. Engineering Microbiology, 2025, 5(2): 100212 DOI:10.1016/j.engmic.2025.100212

登录浏览全文

4963

注册一个新账户 忘记密码

Data Availability Statement

All data generated or analyzed during this study are included in this article.

Declaration of Competing Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

CRediT Authorship Contribution Statement

Tingting Chen: Writing - original draft, Data curation. Xiao He: Formal analysis. Xinyan Zhang: Formal analysis. Tian Tian: Validation. Jian Cheng: Visualization. Tingting Long: Methodology. Yonghao Li: Writing - review & editing, Writing - original draft.

Acknowledgements

This work was supported by the National Natural Science Foundation of China (22378033), Natural Science Foundation Project of Chongqing, the Chongqing Science and Technology Commission (CN) (CSTB2022NSCQ-MSX0544), Science and Technology Research Program of Chongqing Municipal Education Commission (KJZD-M202401502 and KJQN202301546), and Postgraduate Research and Innovation Project of Chongqing University of Science and Technology (YKJCX2420531).

References

[1]

S. Singh, A. Kumar, N. Sivakumar, J.P. Verma, Deconstruction of lignocellulosic biomass for bioethanol production: recent advances and future prospects, Fuel 327 (2022) 125109.

[2]

T. Su, D. Zhao, M. Khodadadi, C. Len, Lignocellulosic biomass for bioethanol: re- cent advances, technology trends and barriers to industrial development, Curr. Opin. Green. Sustain. Chem. 24 (2020) 56-60.

[3]

D.B. Meneses, G. Montes de Oca-Vásquez, J.R. Vega-Baudrit, M. Rojas-Álvarez, J. Corrales-Castillo, L.C. Murillo-Araya, Pretreatment methods of lignocellulosic wastes into value-added products: recent advances and possibilities, Biomass Conv. Bioref. 22 (2020) 1-8.

[4]

M.Y. Areeshi, Microbial cellulase production using fruit wastes and its applications in biofuels production, Int. J. Food Microbiol. 378 (2022) 109814.

[5]

Z. Zhang, J. Xing, X. Li, et al., Review of research progress on the production of cellulase from filamentous fungi, Int. J. Biol. Macromol. 277 (2024) 134539.

[6]

S.M. Hoffman, M. Alvarez, G. Alfassi, et al., Cellulosic biofuel production using emul- sified simultaneous saccharification and fermentation (eSSF) with conventional and thermotolerant yeasts, Biotechnol. Biofuels. 14 (2021) 157.

[7]

C.D. Prado, G.P.L. Mandrujano, J.P. Souza, et al., Physiological characterization of a new thermotolerant yeast strain isolated during Brazilian ethanol production, and its application in high-temperature fermentation, Biotechnol. Biofuels. 13 (2020) 178.

[8]

Q. Meng, B. Abraham, J. Hu, Y. Jiang, Cutting-edge advances in strain and pro- cess engineering for boosting cellulase production in Trichoderma reesei, Bioresour. Technol. 419 (2024) 132015.

[9]

P. Zhang, Q. Li, Y. Chen, et al., Induction of cellulase production in Trichoderma reesei by a glucose-sophorose mixture as an inducer prepared using stevioside, RSC. Adv. 12 (2022) 17392-17400.

[10]

H. Yang, Y. Han, X. Peng, Efficient production of sophorose from glucose and its potentially industrial application in cellulase production, Bioresour. Technol. 412 (2024) 131402.

[11]

Y. Li, C. Liu, F. Bai, X. Zhao, Overproduction of cellulase by Trichoderma reesei RUT C30 through batch-feeding of synthesized low-cost sugar mixture, Bioresour. Tech- nol. 216 (2016) 503-510.

[12]

Y. Li, P. Zhang, D. Zhu, B. Yao, et al., Efficient preparation of soluble inducer for cellulase production and saccharification of corn stover using in-house generated crude enzymes, Biochem. Eng. J. 178 (2021) 108296.

[13]

T. Long, P. Zhang, J. Yu, et al., Regul ation of 𝛽-disaccharide accumulation by 𝛽-glucosidase inhibitors to enhance cellulase production in Trichoderma reesei, Fer- mentation 8 (2022) 232.

[14]

Y. Chen, Y. Gao, Z. Wang, et al., The influence of Trctf 1 gene knockout by CRISPR—Cas9 on cellulase synthesis by trichoderma reesei with various soluble inducers, Fer- mentation 9 (2023) 746.

[15]

S. Yan, Y. Xu, X. Tao, X. Yu, Alleviating vacuolar transport improves cellulase pro- duction in Trichoderma reesei, Appl. Microbiol. Biotechnol. 107 (2023) 2483-2499.

[16]

Y. Li, J. Yu, P. Zhang, et al., Comparative transcriptome analysis of Trichoderma reesei reveals different gene regulatory networks induced by synthetic mixtures of glucose and 𝛽-disaccharide, Bioresour. Bioprocess. 8 (2021) 57.

[17]

C. Wu, Duan Y, S. Gong, S. Kallendrusch, N. Schopow, G. Osterhoff, et al., Integrative and comprehensive pancancer analysis of regulator of chromatin condensation 1 (RCC1), Int. J. Mol. Sci. 22 (2021) 7374.

[18]

F.R. Bischoff, H. Ponstingl, Catalysis of guanine nucleotide exchange on ran by the mitotic regulator RCC1, Nature 354 (1991) 80-82.

[19]

M. Fleischmann, M. Clark, W. Forrester, et al., Analysis of yeast prp 20 mutations and functional complementation by the human homologue RCC1, a protein involved in the control of chromosome condensation, Mol. Gen. Genet. 227 (1991) 417-423.

[20]

M. Dasso, RCC 1 in the cell cycle: the regulator of chromosome condensation takes on new roles, Trends. Biochem. Sci. 18 (1992) 96-101.

[21]

H. Ji, Y. Wang, C. Cloix, et al., The arabidopsis RCC 1 family protein TCF1 regu- lates freezing tolerance and cold acclimation through modulating lignin biosynthe- sis, PLoS. Genet. 11 (2015) e1005471.

[22]

Z. Dong, H. Wang, X. Li, H. Ji, Enhancement of plant cold tolerance by soybean RCC1 family gene GmTCF1a, BMC. Plant Biol. 21 (2021) 369.

[23]

M. Paul, G.K. Shroti, S. Mohapatra, et al., A comparative study on pretreatment of rice straw and saccharification by commercial and isolated cellulase-xylanase cock- tails towards enhanced bioethanol production, Syst. Microbiol. Biomanuf. 4 (2024) 731-749.

[24]

L. Wang, M. Bilal, C. Tan, et al., Industrialization progress of lignocellulosic ethanol, Syst. Microbiol. Biomanuf. 2 (2022) 246-258.

[25]

P.K. Keshav, C. Banoth, S.N. Kethavath, B. Bhukya, Lignocellulosic ethanol produc- tion from cotton stalk: an overview on pretreatment, saccharification and fermenta- tion methods for improved bioconversion process, Biomass Conv. Bioref. 13 (2023) 4477-4493.

[26]

S. Periyasamy, J.B. Isabel, S. Kavitha, et al., Recent advances in consolidated bio- processing for conversion of lignocellulosic biomass into bioethanol-A review, Chem. Eng. J. 453 (2023) 139783.

[27]

M. Raina, R. Boonmee, S. Kirdponpattara, et al., Process performance evaluation of different chemical pretreatments of lignocellulosic biomass for bioethanol produc- tion, Microb. Cell Fact. 211 (2024) 118207.

[28]

S.K. Panda, S.K. Maiti, Novel cyclic shifting of temperature strategy for simultaneous saccharification and fermentation for lignocellulosic bioethanol production, Biore- sour. Technol. 391 (2024) 129975.

[29]

C.A. Prado, M.L.S. Cunha, G.L. Arruda, et al., Hydrodynamic cavitation-assisted acid pretreatment and fed-batch simultaneous saccharification and co-fermentation for ethanol production from sugarcane bagasse using immobilized cells of Scheffer- somyces parashehatae, Bioresour. Technol. 394 (2024) 130234.

[30]

J.K.Saini Hemansi, Enhanced cellulosic ethanol production via fed-batch simulta- neous saccharification and fermentation of sequential dilute acid-alkali pretreated sugarcane bagasse, Bioresour. Technol. 372 (2023) 128671.

[31]

V. Quach, M. Mahaffey, N. Chavez, et al., Dilute gluconic acid pretreatment and fer- mentation of wheat straw to ethanol, Bioprocess. Biosyst. Eng. 47 (2024) 623-632.

[32]

M.D.N. Ramos, J.P. Sandri, A. Claes, et al., Effective application of immobilized second generation industrial saccharomyces cerevisiae strain on consolidated biopro- cessing, New Biotechnol. 78 (2023) 1871-6784.

[33]

L. Wang, L. Cai, Y. Ma, Study on inhibitors from acid pretreatment of corn stalk on ethanol fermentation by alcohol yeast, RSC. Adv. 10 (2020) 38409-38415.

[34]

T. Pinheiro, K.Y.F. Lip, E. García-Ríos, et al., Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions, Sci. Rep. 10 (2020) 22329.

[35]

J. Zhang, G. Zhao, W. Bai, et al., A genomewide evolution-based CRISPR/Cas 9 with donor-free (GEbCD) for developing robust and productive industrial yeast, ACS. Synth. Biol. 13 (2024) 2335-2346.

[36]

S. Kumar, G. Stecher, K. Tamura, MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol. 233 (2016) 1870-1874.

[37]

Y. Li, X. Zhang, F. Zhang, et al., Optimization of cellulolytic enzyme components through engineering trichoderma reesei and on-site fermentation using the soluble inducer for cellulosic ethanol production from corn stover, Biotechnol. Biofuels. 11 (2018) 49.

[38]

R. Li, B. Yao, H. Zeng, Identification and characterization of a nerol synthase in fungi, J. Agric. Food Chem. 72 (2024) 416-423.

[39]

E. Bodie, Z. Chen, K. Crotty, et al., Evolution and screening of trichoderma reesei mutants for secreted protein production at elevated temperature, J. Ind. Microbiol. Biot. 51 (2024) kuae038.

[40]

J. Li, Y. Chen, Y. Gao, et al., Engineering Trichoderma reesei for the hyperproduc- tion of cellulose induced protein 1 (Cip1) on a sophorose-containing inducer to efficiently saccharify alkali-pretreated corn stover, Prep. Biochem. Biotechnol. 53 (2023) 880-890.

[41]

X. Ran, Y. Gao, X. He, et al., Enhanced glucose-1-phosphate production from corn stover using cellulases with reduced 𝛽-glucosidase activity via Trbgl 1 gene knockout in Trichoderma reesei Rut C30, Enzyme Microb. Technol. 180 (2024) 110503.

[42]

T.K. Ghose, Measurement of cellulase activities, Pure Appl. Chem. 59 (1987) 257-268.

[43]

J. Jalak, P. Väljamäe, Mechanism of initial rapid rate retardation in cellobiohydro- lase catalyzed cellulose hydrolysis, Biotechnol. Bioeng. 106 (2010) 871-883.

[44]

F. Zhang, X.Q. Zhao, F.W. Bai, Improvement of cellulase production in Trichoderma reesei rut-C30 by overexpression of a novel regulatory gene Trvib-1, Bioresour. Tech- nol. 247 (2018) 676-683.

[45]

Y. Gao, X. Ran, T. Chen, et al., Characterization of a novel cellobiose phosphorylase with broad optimal pH range from a tailings pond macrogenomic library, Biocatal. Biotransfor. 1 (2024) 12.

[46]

Y. Chen, N. Peng, Y. Gao, et al., Two-stage pretreatment of jerusalem artichoke stalks with wastewater recycling and lignin recovery for the biorefinery of lignocellulosic biomass, Processes 11 (2023) 127.

[47]

Y. Li, X. Zhang, L. Xiong, et al., On-site cellulase production and efficient saccharifi- cation of corn stover employing cbh 2 overexpressing Trichoderma reesei with novel induction system, Bioresour. Technol. 238 (2017) 643-649.

[48]

F. Zheng, R. Yang, Y. Cao, et al., Engineering trichoderma reesei for hyperproduction of cellulases on glucose to efficiently saccharify pretreated corncobs, J. Agric. Food Chem. 68 (2020) 12671-12682.

[49]

X. Xue, Y. Wu, X. Qin, et al., Revisiting overexpression of a heterologous 𝛽-glucosidase in Trichoderma reesei: fusion expression of the Neosartorya fischeri Bgl3A to cbh 1 enhances the overall as well as individual cellulase activities, Microb. Cell Fact. 15 (2016) 122.

[50]

H. Nakazawa, T. Kawai, N. Ida, et al., Construction of a recombinant Trichoderma reesei strain expressing Aspergillus aculeatus 𝛽-glucosidase 1 for efficient biomass conversion, Biotechnol. Bioeng. 109 (2012) 92-99.

[51]

K. Rohr, L. Gremm, B. Geinitz, et al., Optimizing microbioreactor cultivation strate- gies for Trichoderma reesei: from batch to fed-batch operations, Microb. Cell Fact. 23 (2024) 112.

[52]

C. Zhao, X. Liu, T. Zhan, et al., Production of cellulase by Trichoderma reesei from pretreated straw and furfural residues, RSC. Adv. 8 (2018) 36233-36238.

[53]

Y. Wang, M. Ren, Y. Wang, et al., Constitutive overexpression of cellobiohydrolase 2 in Trichoderma reesei reveals its ability to initiate cellulose degradation, Eng. Mi- crobiol. 3 (2022) 100059.

[54]

A. Pang, Y. Luo, X. Hu, et al., Transmembrane transport process and endoplasmic reticulum function facilitate the role of gene cel1b in cellulase production of Tricho- derma reesei, Microb. Cell Fact. 21 (2022) 90.

[55]

H.X. Phong, P. Klanrit, N.T.P. Dung, et al., High-temperature ethanol fermentation from pineapple waste hydrolysate and gene expression analysis of thermotolerant yeast Saccharomyces cerevisiae, Sci. Rep. 12 (2022) 13965.

[56]

C. Lasanta, E. Durán-Guerrero, A.B. Díaz, R. Castro, Influence of fermentation tem- perature and yeast type on the chemical and sensory profile of handcrafted beers, J. Sci. Food Agric. 101 (2020) 1174-1181.

[57]

H. Khotimah, R.I. Astuti, M. Rafi, N.D. Yuliana, Metabolomics study reveals biomarker l -proline as potential stress-protectant compound for high-temperature bioethanol fermentation by yeast Pichia kudriavzevii 1P4, Appl. Biochem. Biotechnol. 195 (2023) 5180-5198.

AI Summary AI Mindmap
PDF (1702KB)

268

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/