Inertial mixing of acoustically levitated droplets for time-lapse protein crystallography

Soichiro Tsujino , Yohei Sato , Shichao Jia , Michal W. Kepa , Sofia Trampari , Takashi Tomizaki

Droplet ›› 2024, Vol. 3 ›› Issue (3) : e132

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Droplet ›› 2024, Vol. 3 ›› Issue (3) : e132 DOI: 10.1002/dro2.132
RESEARCH ARTICLE

Inertial mixing of acoustically levitated droplets for time-lapse protein crystallography

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Abstract

Varying the chemical consistency of acoustically levitated droplets opens up an in situ study of chemical and biochemical reactions in small volumes. However, the optimization of the mixing time and the minimization of the positional instability induced by solution dispensing are necessary for practical applications such as the study of the transient state of macromolecules crystallography during the ligand binding processes. For this purpose, we study the inertial mixing in a configuration compatible with the room-temperature crystallography using the acoustic levitation diffractometer, therein solution drops ejected at high velocity collide and coalesce with droplets dispensed on acoustically levitated and rotating polymer thin-film sample holders. With the proposed method, we are able to achieve the mixing time of ~0.1 s for sub-micro and a few microliter droplets. The observed short mixing time is ascribed to the rapid penetration of the solution into the droplets and confirmed by a computational fluid dynamic simulation. The demonstrated accelerated solution mixing is tested in a pilot time-lapse protein crystallography experiment using the acoustic levitation diffractometer. The results indicate the detection of transient ligand binding state within 2 s after the solution dispensing, suggesting the feasibility of the proposed method for studying slow biochemical processes.

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Soichiro Tsujino, Yohei Sato, Shichao Jia, Michal W. Kepa, Sofia Trampari, Takashi Tomizaki. Inertial mixing of acoustically levitated droplets for time-lapse protein crystallography. Droplet, 2024, 3(3): e132 DOI:10.1002/dro2.132

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References

[1]

Tsujino S, Tomizaki T. Ultrasonic acoustic levitation for fast frame rate X-ray protein crystallography at room temperature. Sci Rep. 2016;6:25558.

[2]

Tomizaki T, Shinoda A, Tsujino S. Single crystal time-lapse measurement using ultrasonic acoustic levitation. AIP Conf Proc. 2019;2054:060072.

[3]

Tsujino S, Shinoda A, Tomizaki T. On-demand droplet loading of ultrasonic acoustic levitator and its application for protein crystallography experiments. Appl Phys Lett. 2019;114:213702.

[4]

Tsujino S, Sato Y, Takeda Y, Tomizaki T. Oscillation resonances and anisotropic damping of the motion of acoustically levitated droplets in single-axis acoustic levitators. Appl Phys Lett. 2019;115:053702.

[5]

Kepa MW, Tomizaki T, Sato Y, et al. Acoustic levitation and rotation of thin films and their application for room temperature protein crystallography. Sci Rep. 2022;12:5349.

[6]

Jia S, Sato Y, Tsujino S. Size and shape dependent rotation characteristics of thin film ultrasonic rotors. Appl Phys Lett. 2022;121:254102.

[7]

Tsujino S, Tomizaki T. Applications of acoustic levitation in chemical analysis and biochemistry. In: D Zhang, ed. Acoustic Levitation from Physics to Applications. Springer-Nature;2020:151-179.

[8]

Dinapolo R, Bergmaschi A, Henrich B, et al. EIGER: next generation single photon counting detector for X-ray applications. Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometres, Detectors and Associated Equopment. 2011;650:79-83.

[9]

Mozzanica A, Bergamaschi A, Cartier S, et al. Prototype characterization of the JUNGFRAU pixel detector for SwissFEL. J Instrum. 2014;9:C05010.

[10]

Chapman H, Fromme P, Barty A, et al. Femtosecond X-ray protein nanocrystallography. Nature. 2011;470:73-77.

[11]

Nango E, Royant A, Kubo M, et al. A three-dimensional movie of structural changes in bacteriorhodopsin. Science. 2016;354:1552.

[12]

Jamsen JA, Beard WA, Pedersen LC, et al. Time-lapse crystallography snapshots of a double-strand break repair polymerase in action. Nat Commun. 2017;8:253.

[13]

Weinert W, Olieric N, Cheng R, et al. Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons. Nat Commun. 2017;8:542.

[14]

Schulz EC, Mehrabi P, Müller-Werkmeister HM, et al. The hit-and-return system enables efficient time-resolved serial synchrotron crystallography. Nat Methods. 2018;15:901-904.

[15]

Skopintsev P, Ehrenberg D, Weinert T, et al. Femtosecond-to-millisecond structural changes in a light-driven sodium pump. Nature. 2020;583:314-318.

[16]

Laurell T, Wallman L, Nilsson J. Design and development of a silicon microfabricated flow-through dispenser for on-line picolitre sample handling. J Micromech Microeng. 1999;9:369.

[17]

Sntesson S, Andersson M, Dergerman E, Johansson T, Nilsson J, Nilsson S. Airborne cell analysis. Anal Chem. 2000;72:3412-3418.

[18]

Leopold L, Haberkorn M, Laurell T, et al. On-line monitoring of airborne chemistry in levitated nanodroplets: in situ synthesis and application of SERS-active Ag-Sols for trace analysis by FT-Raman spectroscopy. Anal Chem. 2003;75:2166-2171.

[19]

Surowiec I, Baena JR, Frank J, et al. Flow-through microdispenser for interfacing µ-HPLC to Raman and mid-IR spectroscopic detection. J Chromatogr A. 2005;1080:132-139.

[20]

Lopez-Pastor M, Dominguez-Vidal A, Ayora-Canada MJ, Laurell T, Vakcarcek M, Lendl B. Containerless reaction monitoring in ionic liquids by means of Raman microscopy. Lab Chip. 2007;7:126-132.

[21]

Santesson S, Degerman E, Rorsman P, Johansson T, Lemos S, Nilsson S. Cell–cell communication between adipocytes and pancreatic β-cells in acoustically levitated droplets. Integr Biol. 2009;1:595-601.

[22]

Schneeline A, Behrens RL. Potential of levitated drops to serve as microreactors for biophysical measurements. Biophys Chem. 2012;165-166:1-12.

[23]

Chen Z, Zang D, Zhao L, et al. Liquid marble coalescence and triggered microreaction driven by acoustic levitation. Langmuir. 2017;33:6232-6239.

[24]

Zang D, Yu Y, Chen Z, Li X, Wu H, Geng X. Acoustic levitation of liquid drops: dynamics, manipulation and phase transitions. Adv Colloid Interface Sci. 2017;243:77-85.

[25]

Ji X, Jiang P, Jiang Y, et al. Toward enhanced aerosol particle adsorption in never-bursting bubble via acoustic levitation and controlled liquid compensation. Adv Sci. 2023;10:2300049.

[26]

Ottino JM. The Kinematics of Mixing: Stretching, Chaos, and Transport. Cambridge University Press;1989.

[27]

Chainani ET, Choi WH, Ngo KT, Scheeline A. Mixing in colliding, ultrasonically levitated drops. Anal Chem. 2014;86:2229-2237.

[28]

Simpson SF, Kincaid JR, Holler FJ. Microdroplet mixing for rapid reaction kinetics with Raman spectrometric detection. Anal Chem. 1983;55:1420-1422.

[29]

Simpson SF, Kincaid JR, Holler FJ. Development of a microdroplet mixing technique for the study of rapid reactions by Raman spectroscopy. Anal Chem. 1986;58:3163-3166.

[30]

Carroll B, Hidrovo C. Droplet collision mixing diagnostics using single fluorophore LIF. Exp Fluids. 2012;53:1301-1316.

[31]

Davis RD, Jacobs MI, Houle FA, Wilson KR. Colliding-droplet microreactor: rapid on-demand inertial mixing and metal-catalyzed aqueous phase oxidation processes. Anal Chem. 2017;89:12494-12501.

[32]

Wu JLY, Tellkamp F, Khajehpour M, Robertson WD, Miller RJD. Rapid mixing of colliding picoliter liquid droplets delivered through space from piezoelectric-actuated pipettes characterized by time-resolved fluorescence monitoring. Rev Sci Instrum. 2019;90:055109.

[33]

Mehrabi P, Schulz EC, Agthe M, et al. Liquid application method for time-resolved analyses by serial synchrotron crystallography. Nat Methods. 2019;16:979-982.

[34]

Schlichting H. Berechnung ebener periodischer grenzschichtstromungen. Phys Z. 1932;33:327.

[35]

Nyborg WLM. Acoustic streaming. In: WP Mason, ed. Physical Acoustics. Academic Press;1965:265.

[36]

Trinh EH, Robey JL. Experimental study of streaming flows associated with ultrasonic levitators. Phys Fluids. 1994;6:3567-3579.

[37]

Riley N. Acoustic streaming. In: MJ Crocker, ed. Encyclopedia of Acoustics. Wiley;1997:321.

[38]

Zhao H, Sadhal SS, Trinh EH. Internal circulation in a drop in an acoustic field. J Acoust Soc Am. 1999;106:3289-3295.

[39]

Yarin AL, Bren G, Kastner O, Rensink D, Tropea C. Evaporation of acoustically levitated droplets. J Fluid Mechanics. 1999;399:151-204.

[40]

Abe Y, Hyuga D, Yamada S, Aoki K. Study on internal flow and surface deformation of large droplet levitated by ultrasonic wave. Ann NY Acad Sci. 2006;1077:49-62.

[41]

Shen CL, Xie WJ, Wei B. Parametrically excited sectorial oscillation of liquid drops floating in ultrasound. Phys Rev E. 2010;81:046305.

[42]

Shen CL, Xie WJ, Yan ZL, Wei B. Internal flow of acoustically levitated drops undergoing sectorial oscillations. Phys Lett A. 2010;374:4045-4048.

[43]

Watanabe A, Hasegawa K, Abe Y. Contactless fluid manipulation in air: droplet coalescence and active mixing by acoustic levitation. Sci Rep. 2018;8:10221.

[44]

Koyano Y, Kitahata H, Hasegawa K, et al. Diffusion enhancement in a levitated droplet via oscillatory deformation. Phys Rev E. 2020;102:033109.

[45]

Hasegawa K, Watanabe A, Kaneko A, Abe Y. Internal flow during mixing induced in acoustically levitated droplets by mode oscillations. Phys Fluids. 2019;31:112101.

[46]

Lamb H. Hydrodynamics. 6th ed. Dover Publications, Inc.;1932:640.

[47]

Renard C, Leclercq L, Stocco A, Cottet H. Superhydrophobic capillary coatings: elaboration, characterization and application to electrophoretic separations. J Chromatogr A. 2019;1603:361-370.

[48]

Bureš L, Sato Y. Direct numerical simulation of evaporation and condensation with the geometric VOF method and a sharp-interface phase-change model. Int J Heat Mass Trans. 2021;173:121233.

[49]

PSI-Boil (https://github.com/Niceno/PSI-BOIL).

[50]

Etchells III AW, Meyer CF. Mixing in pipelines. In: EL Paul, VA Atiemo-Obeng, SM Kresta, eds. Handbook of Industrial Mixing. John Weiley & Sons, Inc.;2004:411.

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2024 The Author(s). Droplet published by Jilin University and John Wiley & Sons Australia, Ltd.

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