Clinical and translational mode of single-cell measurements: An artificial intelligent single-cell

Xiangdong Wang , Charles A. Powell , Qin Ma , Jia Fan

Clinical and Translational Medicine ›› 2024, Vol. 14 ›› Issue (9) : e1818

PDF
Clinical and Translational Medicine ›› 2024, Vol. 14 ›› Issue (9) : e1818 DOI: 10.1002/ctm2.1818
EDITORIAL

Clinical and translational mode of single-cell measurements: An artificial intelligent single-cell

Author information +
History +
PDF

Abstract

With rapid development and mature of single-cell measurements, single-cell biology and pathology become an emerging discipline to understand the disease. However, it is important to address concerns raised by clinicians as to how to apply single-cell measurements for clinical practice, translate the signals of single-cell systems biology into determination of clinical phenotype, and predict patient response to therapies. The present Perspective proposes a new system coined as the clinical artificial intelligent single-cell (caiSC) with the dynamic generator of clinical single-cell informatics, artificial intelligent analyzers, molecular multimodal reference boxes, clinical inputs and outs, and AI-based computerization. This system provides reliable and rapid information for impacting clinical diagnoses, monitoring, and prediction of the disease at the single-cell level. The caiSC represents an important step and milestone to translate the single-cell measurement into clinical application, assist clinicians’ decision-making, and improve the quality of medical services. There is increasing evidence to support the possibility of the caiSC proposal, since the corresponding biotechnologies associated with caiSCs are rapidly developed. Therefore, we call the special attention and efforts from various scientists and clinicians on the caiSCs and believe that the appearance of the caiSCs can shed light on the future of clinical molecular medicine.

Keywords

artificial intelligence / gene sequencing / medicine / multi-omics / single-cell biology

Cite this article

Download citation ▾
Xiangdong Wang, Charles A. Powell, Qin Ma, Jia Fan. Clinical and translational mode of single-cell measurements: An artificial intelligent single-cell. Clinical and Translational Medicine, 2024, 14(9): e1818 DOI:10.1002/ctm2.1818

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Brady G, Iscove NN. Construction of cDNA libraries from single cells. Methods Enzymol. 1993; 225: 611-623.

[2]

Klein CA, Schmidt-Kittler O, Schardt JA, Pantel K, Speicher MR, Riethmüller G. Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells. Proc Natl Acad Sci U S A. 1999; 96(8): 4494-4499.

[3]

Klein CA, Seidl S, Petat-Dutter K, et al. Combined transcriptome and genome analysis of single micrometastatic cells. Nat Biotechnol. 2002; 20(4): 387-392.

[4]

Niu F, Wang DC, Lu J, Wu W, Wang X. Potentials of single-cell biology in identification and validation of disease biomarkers. J Cell Mol Med. 2016; 20(9): 1789-1795.

[5]

Wilk AJ, Rustagi A, Zhao NQ, et al. A single-cell atlas of the peripheral immune response in patients with severe COVID-19. Nat Med. 2020; 26(7): 1070-1076.

[6]

Liu F, Liu X, Powell CA, et al. Initiative of clinical single-cell biomedicine in clinical and translational medicine. Clin Transl Med. 2023; 13(1): e1173.

[7]

Liu Y, Zhang Q, Xing B, et al. Immune phenotypic linkage between colorectal cancer and liver metastasis. Cancer Cell. 2022; 40(4): 424-437.

[8]

Wu D, Wang X. Application of clinical bioinformatics in lung cancer-specific biomarkers. Cancer Metastasis Rev. 2015; 34(2): 209-216.

[9]

Wang X. Clinical trans-omics: an integration of clinical phenomes with molecular multiomics. Cell Biol Toxicol. 2018; 34(3): 163-166.

[10]

CararoLopes E, Sawant A, Moore D, et al. Integrated metabolic and genetic analysis reveals distinct features of human differentiated thyroid cancer. Clin Transl Med. 2023; 13(6): e1298.

[11]

Hao Y, Hao S, Andersen-Nissen E, et al. Integrated analysis of multimodal single-cell data. Cell. 2021; 184(13): 3573-3587.

[12]

Lotfollahi M, Hao Y, Theis FJ, Satija R. The future of rapid and automated single-cell data analysis using reference mapping. Cell. 2024; 187(10): 2343-2358.

[13]

Chen H, Song Z, Qian M, Bai C, Wang X. Selection of disease-specific biomarkers by integrating inflammatory mediators with clinical informatics in AECOPD patients: a preliminary study. J Cell Mol Med. 2012; 16(6): 1286-1297.

[14]

Liu X, Wang DC, Powell CA, Wang X. Challenges of clinical translation from single-cell sequencing to measures in clinical biochemistry of haematology: definition of immune cell identities. Clin Transl Med. 2023; 13(9): e1401.

[15]

Liu X, Xu G, Chen C, Song Y, Wang W, Wang X. Evaluation of pulmonary single-cell identity specificity in scRNA-seq analysis. Clin Transl Med. 2022; 12(12): e1132.

[16]

Liu X, Zhu Z, Wang X. Specificity and function of T cell subset identities using single-cell sequencing. Clin Transl Disc. 2023; 3: e199.

[17]

Norgeot B, Quer G, Beaulieu-Jones BK, et al. Minimum information about clinical artificial intelligence modeling: the MI-CLAIM checklist. Nat Med. 2020; 26(9): 1320-1324.

RIGHTS & PERMISSIONS

2024 The Author(s). Clinical and Translational Medicine published by John Wiley & Sons Australia, Ltd on behalf of Shanghai Institute of Clinical Bioinformatics.

AI Summary AI Mindmap
PDF

139

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/