Roads diverged in a wood: Proteins and RNAs encoded by cytochrome b (CYTB) gene in health and disease

Cijie Du , Baodan Chen , Yile Huang , Wenxi Liang , Ying Hua Su , Xingguo Liu

Clinical and Translational Discovery ›› 2025, Vol. 5 ›› Issue (1) : e70026

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Clinical and Translational Discovery ›› 2025, Vol. 5 ›› Issue (1) : e70026 DOI: 10.1002/ctd2.70026
REVIEW ARTICLE

Roads diverged in a wood: Proteins and RNAs encoded by cytochrome b (CYTB) gene in health and disease

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Abstract

Background: The cytochrome b (CYTB) gene, a crucial component of the mitochondrial genome, plays a multifaceted role in cellular metabolism, energy production and various biological processes.

Main body: It is well known that the CYTB gene encodes a subunit of complex III in the electron transport chain, which is vital for the oxidative phosphorylation process and ATP generation. Various studies report that the CYTB gene not only encodes a core protein in the mitochondrial respiratory chain but also produces a long non-coding RNA called lncCYTB, which participates in a variety of physiological and pathological processes. Inspiringly, a study has recently revealed that the CYTB gene also encodes a novel 187 amino acid long polypeptide, CYTB-187AA, a mitochondrial DNA-encoded protein produced by cytosolic translation and important for early mammalian development.

Conclusion: This review will provide insight into the functional and expression properties of the CYTB gene, as well as its unique non-coding RNA signature, and describe the diseases associated with the CYTB gene, ranging from mitochondrial dysfunction to more complex genetic disorders.

Keywords

CYTB-187AA / cytochrome b / disease / long non-coding RNA / mitochondria

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Cijie Du, Baodan Chen, Yile Huang, Wenxi Liang, Ying Hua Su, Xingguo Liu. Roads diverged in a wood: Proteins and RNAs encoded by cytochrome b (CYTB) gene in health and disease. Clinical and Translational Discovery, 2025, 5(1): e70026 DOI:10.1002/ctd2.70026

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References

[1]

NichollsTJ, Gustafsson CM. Separating and segregating the human mitochondrial genome. Trends Biochem Sci. 2018;43(11):869-881.

[2]

TangJX, Thompson K, TaylorRW, OlahovaM. Mitochondrial OXPHOS biogenesis: co-regulation of protein synthesis, import, and assembly pathways. Int J Mol Sci. 2020;21(11):3820.

[3]

HatefiY. The mitochondrial electron transport and oxidative phosphorylation system. Annu Rev Biochem. 1985;54:1015-1069.

[4]

EspostiMD, De Vries S, CrimiM, GhelliA, Patarnello T, MeyerA. Mitochondrial cytochrome b: evolution and structure of the protein. Biochim Biophys Acta. 1993;1143(3):243-271.

[5]

MohammadG, KumarJ, KowluruRA. Mitochondrial genome-encoded long noncoding RNA cytochrome B and mitochondrial dysfunction in diabetic retinopathy. Antioxid Redox Signal. 2023;39(13-15):817-828.

[6]

RackhamO, Shearwood AM, MercerTR, DaviesSM, Mattick JS, FilipovskaA. Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins. RNA. 2011;17(12):2085-2093.

[7]

HuZ, YangL, ZhangM, et al. A novel protein CYTB-187AA encoded by the mitochondrial gene CYTB modulates mammalian early development. Cell Metab. 2024;36(7):1586-1597.e7.

[8]

WestB. A case of self-diagnosis. Br Med J. 1978;1(6108):305-306.

[9]

XiaD, YuCA, KimH, et al. Crystal structure of the cytochrome bc1 complex from bovine heart mitochondria. Science. 1997;277(5322):60-66.

[10]

YanC, DuanmuX, ZengL, Liu B, SongZ. Mitochondrial DNA: distribution, Mutations, and Elimination. Cells. 2019;8(4):379.

[11]

XiaD, EsserL, TangWK, et al. Structural analysis of cytochrome bc1 complexes: implications to the mechanism of function. Biochim Biophys Acta. 2013;1827(11-12):1278-1294.

[12]

Nolfi-DoneganD, Braganza A, ShivaS. Mitochondrial electron transport chain: oxidative phosphorylation, oxidant production, and methods of measurement. Redox Biol. 2020;37:101674.

[13]

XiaD, EsserL, YuL, YuCA. Structural basis for the mechanism of electron bifurcation at the quinol oxidation site of the cytochrome bc1 complex. Photosynth Res. 2007;92(1):17-34.

[14]

BlakelyEL, Mitchell AL, FisherN, et al. A mitochondrial cytochrome b mutation causing severe respiratory chain enzyme deficiency in humans and yeast. FEBS J. 2005;272(14):3583-3592.

[15]

FisherN, Castleden CK, BourgesI, BrasseurG, Dujardin G, MeunierB. Human disease-related mutations in cytochrome b studied in yeast. J Biol Chem. 2004;279(13):12951-12958.

[16]

Flores-MirelesD, Camacho-Villasana Y, LutikurtiM, et al. The cytochrome b carboxyl terminal region is necessary for mitochondrial complex III assembly. Life Sci Alliance. 2023;6(7):e202201858.

[17]

LamanteaE, Carrara F, MariottiC, MorandiL, Tiranti V, ZevianiM. A novel nonsense mutation (Q352X) in the mitochondrial cytochrome b gene associated with a combined deficiency of complexes I and III. Neuromuscul Disord. 2002;12(1):49-52.

[18]

Acin-PerezR, Bayona-Bafaluy MP, Fernandez-SilvaP, et al. Respiratory complex III is required to maintain complex I in mammalian mitochondria. Mol Cell. 2004;13(6):805-815.

[19]

KeightleyJA, Anitori R, BurtonMD, QuanF, BuistNR, KennawayNG. Mitochondrial encephalomyopathy and complex III deficiency associated with a stop-codon mutation in the cytochrome b gene. Am J Hum Genet. 2000;67(6):1400-1410.

[20]

De CooIF, RenierWO, RuitenbeekW, et al. A 4-base pair deletion in the mitochondrial cytochrome b gene associated with parkinsonism/MELAS overlap syndrome. Ann Neurol. 1999;45(1):130-133.

[21]

AndreuAL, Checcarelli N, IwataS, ShanskeS, DiMauro S. A missense mutation in the mitochondrial cytochrome b gene in a revisited case with histiocytoid cardiomyopathy. Pediatr Res. 2000;48(3):311-314.

[22]

WibrandF, RavnK, SchwartzM, Rosenberg T, HornN, VissingJ. Multisystem disorder associated with a missense mutation in the mitochondrial cytochrome b gene. Ann Neurol. 2001;50(4):540-543.

[23]

AndreuAL, HannaMG, ReichmannH, et al. Exercise intolerance due to mutations in the cytochrome b gene of mitochondrial DNA. N Engl J Med. 1999;341(14):1037-1044.

[24]

XuF, Ackerley C, MajMC, et al. Disruption of a mitochondrial RNA-binding protein gene results in decreased cytochrome b expression and a marked reduction in ubiquinol-cytochrome c reductase activity in mouse heart mitochondria. Biochem J. 2008;416(1):15-26.

[25]

WenzT, CovianR, HellwigP, et al. Mutational analysis of cytochrome b at the ubiquinol oxidation site of yeast complex III. J Biol Chem. 2007;282(6):3977-3988.

[26]

LeeDW, Selamoglu N, LancianoP, et al. Loss of a conserved tyrosine residue of cytochrome b induces reactive oxygen species production by cytochrome bc1. J Biol Chem. 2011;286(20):18139-18148.

[27]

MercerTR, NephS, DingerME, et al. The human mitochondrial transcriptome. Cell. 2011;146(4):645-658.

[28]

SeifertEL, LigetiE, MayrJA, Sondheimer N, HajnoczkyG. The mitochondrial phosphate carrier: role in oxidative metabolism, calcium handling and mitochondrial disease. Biochem Biophys Res Commun. 2015;464(2):369-375.

[29]

MayrJA, MerkelO, KohlweinSD, et al. Mitochondrial phosphate-carrier deficiency: a novel disorder of oxidative phosphorylation. Am J Hum Genet. 2007;80(3):478-484.

[30]

ZhaoY, LiuS, ZhouL, et al. Aberrant shuttling of long noncoding RNAs during the mitochondria-nuclear crosstalk in hepatocellular carcinoma cells. Am J Cancer Res. 2019;9(5):999-1008.

[31]

ZhangX, YuanS, LiuJ, et al. Overexpression of cytosolic long noncoding RNA cytb protects against pressure-overload-induced heart failure via sponging microRNA-103-3p. Mol Ther Nucleic Acids. 2022;27:1127-1145.

[32]

ChenH, DongH, YuanH, et al. Mitochondrial COI and Cytb gene as valid molecular identification marker of sandfly species (Diptera: psychodidae) in China. Acta Trop. 2023;238:106798.

[33]

SuJH, JiWH, WangJ, et al. Phylogenetic relationships of extant zokors (Myospalacinae) (Rodentia, Spalacidae) inferred from mitochondrial DNA sequences. Mitochondr DNA. 2014;25(2):135-141.

[34]

YinLF, WangF, ZhangY, et al. Evolutionary analysis revealed the horizontal transfer of the Cyt b gene from Fungi to Chromista. Mol Phylogenet Evol. 2014;76:155-161.

[35]

GrayMW, BurgerG, LangBF. Mitochondrial evolution. Science. 1999;283(5407):1476-1481.

[36]

AnderssonSG, Zomorodipour A, AnderssonJO, et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature. 1998;396(6707):133-140.

[37]

FitzpatrickDA, Creevey CJ, McInerneyJO. Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Mol Biol Evol. 2006;23(1):74-85.

[38]

MartijnJ, Vosseberg J, GuyL, OffreP, EttemaTJG. Deep mitochondrial origin outside the sampled alphaproteobacteria. Nature. 2018;557(7703):101-105.

[39]

JagielskiT, GaworJ, BakulaZ, Decewicz P, MaciszewskiK, KarnkowskaA. cytb as a new genetic marker for differentiation of Prototheca species. J Clin Microbiol. 2018;56(10):e00584-18.

[40]

ZouY, XuM, RenS, et al. Taxonomy and phylogenetic relationship of zokors. J Genet. 2020;99:38.

[41]

RamosE, Freitas L, NeryMF. The role of selection in the evolution of marine turtles mitogenomes. Sci Rep. 2020;10(1):16953.

[42]

DumasL, ZitoF, AuroyP, Johnson X, PeltierG, AlricJ. Structure–function analysis of chloroplast proteins via random mutagenesis using error-prone PCR. Plant Physiol. 2018;177(2):465-475.

[43]

KurisuG, ZhangH, SmithJL, Cramer WA. Structure of the cytochrome b6f complex of oxygenic photosynthesis: tuning the cavity. Science. 2003;302(5647):1009-1014.

[44]

HurtE, HauskaG. A cytochrome f/b6 complex of five polypeptides with plastoquinol-plastocyanin-oxidoreductase activity from spinach chloroplasts. Eur J Biochem. 1981;117(3):591-595.

[45]

WidgerWR, CramerWA, HerrmannRG, Trebst A. Sequence homology and structural similarity between cytochrome b of mitochondrial complex III and the chloroplast b6-f complex: position of the cytochrome b hemes in the membrane. Proc Natl Acad Sci U S A. 1984;81(3):674-678.

[46]

ManojKM, GideonDA, ParasharA. What is the role of lipid membrane-embedded quinones in mitochondria and chloroplasts? Chemiosmotic Q-cycle versus Murburn reaction perspective. Cell Biochem Biophys. 2021;79(1):3-10.

[47]

ShadM, UsmanM, GardnerQA. Structural–functional characterization of cytochrome b in bc1 and b6f complexes along with polymorphic analysis. Pak J Zool. 2023;55(2):975.

[48]

GabelliniN. Organization and structure of the genes for the cytochrome b/c1 complex in purple photosynthetic bacteria. A phylogenetic study describing the homology of the b/c1 subunits between prokaryotes, mitochondria, and chloroplasts. J Bioenerg Biomembr. 1988;20(1):59-83.

[49]

StefanoGB, SnyderC, KreamRM. Mitochondria, chloroplasts in animal and plant cells: significance of conformational matching. Med Sci Monit. 2015;21:2073-2078.

[50]

PradhanM, PalA, SamantaAK, Banerjee S, SamantaR. Mutations in cytochrome B gene effects female reproduction of Ghungroo pig. Theriogenology. 2018;119:121-130.

[51]

NaumoffPA, Stevenson PM. The differential development of mitochondrial cytochrome P-450 and the respiratory cytochromes in rat ovary. Biochim Biophys Acta. 1981;673(4):359-365.

[52]

PirolaCJ, Garaycoechea M, FlichmanD, CastanoGO, Sookoian S. Liver mitochondrial DNA damage and genetic variability of Cytochrome b—a key component of the respirasome—drive the severity of fatty liver disease. J Intern Med. 2021;289(1):84-96.

[53]

DiricanE, SavrunST, AydinIE, Gulbay G, KaramanU. Analysis of mitochondrial DNA cytochrome-b (CYB) and ATPase-6 gene mutations in COVID-19 patients. J Med Virol. 2022;94(7):3138-3146.

[54]

GanjiR, ReddyPH. Impact of COVID-19 on mitochondrial-based immunity in aging and age-related diseases. Front Aging Neurosci. 2020;12:614650.

[55]

NaitoY, SawadaH, OboshiM, et al. Altered expression of intestinal duodenal cytochrome b and divalent metal transporter 1 might be associated with cardio-renal anemia syndrome. Heart Vessels. 2017;32(11):1410-1414.

[56]

NaitoY, Tsujino T, FujimoriY, SawadaH, Akahori H, HirotaniS, et al. Impaired expression of duodenal iron transporters in Dahl salt-sensitive heart failure rats. J Hypertens. 2011;29(4):741-748.

[57]

SilverbergD, WexlerD, BlumM, Wollman Y, IainaA. The cardio-renal anaemia syndrome: does it exist? Nephrol Dial Transplant. 2003;18(8):viii7-viii12.

[58]

ViottiR, Vigliano C, LococoB, AlvarezMG, PettiM, BertocchiG, et al. Side effects of benznidazole as treatment in chronic Chagas disease: fears and realities. Expert Rev Anti Infect Ther. 2009;7(2):157-163.

[59]

MagdalenoA, Suarez Mantilla B, RochaSC, PralEM, SilberAM. The involvement of glutamate metabolism in the resistance to thermal, nutritional, and oxidative stress in Trypanosoma cruzi. Enzyme Res. 2011;2011:486928.

[60]

KhareS, RoachSL, BarnesSW, et al. Utilizing chemical genomics to identify cytochrome b as a novel drug target for Chagas disease. PLoS Pathog. 2015;11(7):e1005058.

[61]

LokmanPM, KazetoY, IjiriS, Young G, MiuraT, AdachiS, et al. Ovarian mitochondrial cytochrome b mRNA levels increase with sexual maturity in freshwater eels (Anguilla spp.). J Comp Physiol B. 2003;173(1):11-19.

[62]

IrwinDM, KocherTD, WilsonAC. Evolution of the cytochrome b gene of mammals. J Mol Evol. 1991;32(2):128-144.

[63]

MeyerA, WilsonAC. Origin of tetrapods inferred from their mitochondrial DNA affiliation to lungfish. J Mol Evol. 1990;31(5):359-364.

[64]

HowellN, Gilbert K. Mutational analysis of the mouse mitochondrial cytochrome b gene. J Mol Biol. 1988;203(3):607-618.

[65]

PalA, PalA, BanerjeeS, Batabyal S, ChatterjeePN. Mutation in cytochrome B gene causes debility and adverse effects on health of sheep. Mitochondrion. 2019;46:393-404.

[66]

WolfDP, Mitalipov N, MitalipovS. Mitochondrial replacement therapy in reproductive medicine. Trends Mol Med. 2015;21(2):68-76.

[67]

BiR, LiY, XuM, ZhengQ, ZhangDF, Li X, et al. Direct evidence of CRISPR-Cas9-mediated mitochondrial genome editing. Innovation (Camb). 2022;3(6):100329.

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2025 The Author(s). Clinical and Translational Discovery published by John Wiley & Sons Australia, Ltd on behalf of Shanghai Institute of Clinical Bioinformatics.

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