RNF219 RING Finger Domain Mutants Drive Phase Separation to Encapsulate CCR4-NOT and Promote Cell Proliferation

Chen Chen , Chenghao Guo , Ke Fang , Chengqi Lin , Zhuojuan Luo

Cell Proliferation ›› 2026, Vol. 59 ›› Issue (1) : e70072

PDF
Cell Proliferation ›› 2026, Vol. 59 ›› Issue (1) :e70072 DOI: 10.1111/cpr.70072
ORIGINAL ARTICLE
RNF219 RING Finger Domain Mutants Drive Phase Separation to Encapsulate CCR4-NOT and Promote Cell Proliferation
Author information +
History +
PDF

Abstract

RING finger protein 219 (RNF219) is a co-factor for the CCR4-NOT deadenylase complex in mammals. Here, we found that mutations within the C3HC4 scaffold of the RING finger domain in RNF219 are capable of forming condensates via liquid–liquid phase separation (LLPS), though the wild-type RING finger domain intrinsically suppresses LLPS. We further demonstrated that the adjacent coiled-coil 1 (CC1) domain promotes the potential of RNF219 to form condensates. Moreover, the mutant RNF219 condensates are able to encapsulate the CCR4-NOT complex, inhibiting the RNA deadenylation activity of CCR4-NOT. Additionally, we observed that RNF219 mutations could promote cell proliferation. These findings suggest a pathogenic mechanism whereby RNF219 mutations could induce CCR4-NOT condensate formation, inhibit deadenylation-dependent mRNA decay and drive cell proliferation.

Keywords

CCR4-NOT / LLPS / mutants / RNF219

Cite this article

Download citation ▾
Chen Chen, Chenghao Guo, Ke Fang, Chengqi Lin, Zhuojuan Luo. RNF219 RING Finger Domain Mutants Drive Phase Separation to Encapsulate CCR4-NOT and Promote Cell Proliferation. Cell Proliferation, 2026, 59(1): e70072 DOI:10.1111/cpr.70072

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

A. C. Goldstrohm and M. Wickens, “Multifunctional Deadenylase Complexes Diversify mRNA Control,” Nature Reviews Molecular Cell Biology 9 (2008): 337–344.

[2]

L. Maillet, C. Tu, Y. K. Hong, E. O. Shuster, and M. A. Collart, “The Essential Function of Not1 Lies Within the Ccr4-Not Complex,” Journal of Molecular Biology 303 (2000): 131–143.

[3]

T. Raisch, F. Sandmeir, O. Weichenrieder, E. Valkov, and E. Izaurralde, “Structural and Biochemical Analysis of a NOT1 MIF4G-Like Domain of the CCR4-NOT Complex,” Journal of Structural Biology 204 (2018): 388–395.

[4]

C. Keskeny, T. Raisch, A. Sgromo, et al., “A Conserved CAF40-Binding Motif in Metazoan NOT4 Mediates Association With the CCR4–NOT Complex,” Genes & Development 33 (2019): 236–252.

[5]

L. Pavanello, B. Hall, B. Airhihen, and G. S. Winkler, “The Central Region of CNOT1 and CNOT9 Stimulates Deadenylation by the Ccr4–Not Nuclease Module,” Biochemical Journal 475 (2018): 3437–3450.

[6]

N. Azzouz, O. O. Panasenko, C. Deluen, J. Hsieh, G. Theiler, and M. A. Collart, “Specific Roles for the Ccr4-Not Complex Subunits in Expression of the Genome,” RNA 15 (2009): 377–383.

[7]

M. Tucker, M. A. Valencia-Sanchez, R. R. Staples, J. J. Chen, C. L. Denis, and R. Parker, “The Transcription Factor Associated Ccr4 and Caf1 Proteins Are Components of the Major Cytoplasmic mRNA Deadenylase in,” Cell 104 (2001): 377–386.

[8]

M. Tucker, R. R. Staples, M. A. Valencia-Sanchez, D. Muhlrad, and R. Parker, “Ccr4p Is the Catalytic Subunit of a Ccr4p/Pop2p/Notp mRNA Deadenylase Complex in Saccharomyces cerevisiae,” EMBO Journal 21 (2002): 1427–1436.

[9]

C. Temme, S. Zaessinger, S. Meyer, M. Simonelig, and E. Wahle, “A Complex Containing the CCR4 and CAF1 Proteins Is Involved in mRNA Deadenylation in Drosophila,” EMBO Journal 23 (2004): 2862–2871.

[10]

M. W. Webster, Y. H. Chen, J. A. W. Stowell, N. Alhusaini, and L. A. Passmore, “mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases,” Molecular Cell 70 (2018): 1089–1100.

[11]

Y. Hyerim, P. Joha, H. Minju, L. Jaechul, C. Hyeshik, and K. V. Narry, “PABP Cooperates With the CCR4-NOT Complex to Promote mRNA Deadenylation and Block Precocious Decay,” Molecular Cell 70 (2018): 1081–1088.

[12]

T. Raisch, C. T. Chang, Y. Levdansky, S. Muthukumar, S. Raunser, and E. Valkov, “Reconstitution of Recombinant Human CCR4-NOT Reveals Molecular Insights Into Regulated Deadenylation,” Nature Communications 10 (2019): 3173.

[13]

H. Du, C. Chen, Y. Wang, et al., “RNF219 Interacts With CCR4-NOT in Regulating Stem Cell Differentiation,” Journal of Molecular Cell Biology 12 (2020): 894–905.

[14]

F. Poetz, J. Corbo, Y. Levdansky, et al., “RNF219 Attenuates Global mRNA Decay Through Inhibition of CCR4-NOT Complex-Mediated Deadenylation,” Nature Communications 12 (2021): 7175.

[15]

A. Guénolé, F. Velilla, A. Chartier, et al., “RNF219 Regulates CCR4-NOT Function in mRNA Translation and Deadenylation,” Scientific Reports 12 (2022): 9288.

[16]

P. Coulombe, J. Nassar, I. Peiffer, et al., “The ORC Ubiquitin Ligase OBI1 Promotes DNA Replication Origin Firing,” Nature Communications 10 (2019): 2426.

[17]

S. Zhang, Y. Xu, C. Xie, L. Ren, and J. Li, “RNF219/α-Catenin/LGALS3 Axis Promotes Hepatocellular Carcinoma Bone Metastasis and Associated Skeletal Complications,” Advanced Science 8 (2020): 2001961.

[18]

S. Sanulli, M. J. Trnka, V. Dharmarajan, et al., “HP1 Reshapes Nucleosome Core to Promote Phase Separation of Heterochromatin,” Nature 575 (2019): 390–394.

[19]

A. K. Rai, J. X. Chen, M. Selbach, and L. Pelkmans, “Kinase-Controlled Phase Transition of Membraneless Organelles in Mitosis,” Nature 559 (2018): 211–216.

[20]

A. Boija, I. A. Klein, B. R. Sabari, et al., “Transcription Factors Activate Genes Through the Phase-Separation Capacity of Their Activation Domains,” Cell 175 (2018): 1842–1855.

[21]

R. Sachdev, M. Hondele, M. Linsenmeier, et al., “Pat1 Promotes Processing Body Assembly by Enhancing the Phase 1 Separation of the Dead-Box ATPase Dhh1 and RNA,” eLife Sciences 8 (2019): e41415.

[22]

T. H. Kim, B. Tsang, R. M. Vernon, N. Sonenberg, L. E. Kay, and J. D. Forman-Kay, “Phospho-Dependent Phase Separation of FMRP and CAPRIN1 Recapitulates Regulation of Translation and Deadenylation,” Science 365 (2019): 825–829.

[23]

A. Patel, H. O. Lee, L. Jawerth, S. Maharana, and S. Alberti, “A Liquid-To-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation,” Cell 162 (2015): 1066–1077.

[24]

T. Murakami, S. Qamar, J. Q. Lin, G. S. K. Schierle, and P. S. George-Hyslop, “ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels Into Irreversible Hydrogels Impairs RNP Granule Function,” Neuron 88 (2015): 678–690.

[25]

G. Y. Zhu, J. J. Xie, W. N. Kong, et al., “Phase Separation of Disease-Associated SHP2 Mutants Underlies MAPK Hyperactivation,” Cell 183 (2020): 490–502.

[26]

Q. X. Liu, J. X. Li, W. J. Zhang, et al., “Glycogen Accumulation and Phase Separation Drives Liver Tumor Initiation,” Cell 184 (2021): 5559.

[27]

R. J. Deshaies and C. A. P. Joazeiro, “RING Domain E3 Ubiquitin Ligases,” Annual Review of Biochemistry 78 (2009): 399–434.

[28]

D. Bracha, M. T. Walls, M. T. Wei, et al., “Mapping Local and Global Liquid Phase Behavior in Living Cells Using Photo-Oligomerizable Seeds,” Cell 175 (2018): 1467–1480.

[29]

X. D. Li, Q. L. Zhong, D. J. Luo, et al., “RNF219 Promotes Nasopharyngeal Carcinoma Progression by Activating the NF-κB Pathway,” Molecular Biotechnology 65 (2023): 1318–1326.

[30]

R. Parker and H. Song, “The Enzymes and Control of Eukaryotic mRNA Turnover,” Nature Structural & Molecular Biology 11 (2004): 121–127.

[31]

Y. Yan, “Diverse Functions of Deadenylases in DNA Damage Response and Genomic Integrity,” Wiley Interdisciplinary Reviews: RNA 12 (2020): e1621.

[32]

L. N. Zhang and Y. B. Yan, “Depletion of Poly(A)-Specific Ribonuclease (PARN) Inhibits Proliferation of Human Gastric Cancer Cells by Blocking Cell Cycle Progression,” Biochimica et Biophysica Acta (BBA)—Molecular Cell Research 1853 (2015): 522–534.

[33]

S. Torrino, W. M. Oldham, A. R. Tejedor, et al., “Mechano-Dependent Sorbitol Accumulation Supports Biomolecular Condensate,” Cell 188 (2025): 447–464.

[34]

A. M. Williams, T. M. Dickson, C. A. Lagoa-Miguel, and P. C. Bevilacqua, “Biological Solution Conditions and Flanking Sequence Modulate LLPS of RNA G-Quadruplex Structures,” RNA (New York, NY) 28 (2022): 1197–1209.

[35]

T. Zheng, N. Wake, S.-L. Weng, et al., “Molecular Insights Into the Effect of 1,6-Hexanediol on FUS Phase Separation,” EMBO Journal 44 (2025): 1–16.

[36]

J. S. Hwang, E. Kim, J. Hur, T. J. Yoon, and H. G. Seo, “Ring Finger Protein 219 Regulates Inflammatory Responses by Stabilizing Sirtuin 1,” British Journal of Pharmacology 177 (2020): 4601–4614.

[37]

C. Guo, Z. Che, J. Yue, P. Xie, and C. Lin, “ENL Initiates Multivalent Phase Separation of the Super Elongation Complex (SEC) in Controlling Rapid Transcriptional Activation,” Science Advances 6 (2020): eaay4858.

[38]

C. Lin, E. R. Smith, H. Takahashi, K. C. Lai, and A. Shilatifard, “AFF4, a Component of the ELL/P-TEFb Elongation Complex and a Shared Subunit of MLL Chimeras, Can Link Transcription Elongation to Leukemia,” Molecular Cell 37 (2010): 429–437.

RIGHTS & PERMISSIONS

2025 The Author(s). Cell Proliferation published by Beijing Institute for Stem Cell and Regenerative Medicine and John Wiley & Sons Ltd.

PDF

14

Accesses

0

Citation

Detail

Sections
Recommended

/