Alveolar epithelial type 2 cells in acute lung injury and acute respiratory distress syndrome: spatiotemporal fate and regulation

Wanda Bi , Rui Wang , Saiying Hou , Wenyi Liu , Huacai Zhang , Zhe Xu , Jin Deng , Zhen Wang , Ling Zeng , Jianxin Jiang

Burns & Trauma ›› 2025, Vol. 13 ›› Issue (1) : tkaf050

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Burns & Trauma ›› 2025, Vol. 13 ›› Issue (1) :tkaf050 DOI: 10.1093/burnst/tkaf050
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Alveolar epithelial type 2 cells in acute lung injury and acute respiratory distress syndrome: spatiotemporal fate and regulation
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Abstract

Acute lung injury (ALI) and acute respiratory distress syndrome (ARDS) present significant challenges in critical care, with high mortality rates and limited treatment options. Alveolar epithelial type 2 (AT2) cells are central to lung repair and regeneration and play a vital role in maintaining lung homeostasis. However, the regulatory mechanisms governing AT2 cell fate during different stages of lung injury and repair remain incompletely understood. This review delves into the temporal and spatial heterogeneity of AT2 cells, highlighting their dynamic behavior in response to lung injury. We explore the pivotal role of AT2 cells across various stages of inflammation, repair, and fibrosis and discuss how these processes are influenced by factors such as aging, mechanical stress, and interactions within the alveolar microenvironment. This review also emphasizes the importance of integrating spatiotemporal multiomics approaches to uncover the molecular mechanisms underlying AT2 cell function and their potential therapeutic applications. Furthermore, we discuss novel strategies for enhancing the regenerative capacity of AT2 cells through targeted delivery systems, including protein, gene, and mitochondrial therapies. By advancing our understanding of AT2 cell biology and improving therapeutic approaches, we aim to pave the way for more effective treatments for lung injury diseases, particularly ALI and ARDS.

Keywords

Acute lung injury / Acute respiratory distress syndrome / Alveolar epithelial type 2 cells / Lung regeneration / Spatiotemporal multiomics / Alveolar epithelial type 2 cell fate / Targeted therapy

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Wanda Bi, Rui Wang, Saiying Hou, Wenyi Liu, Huacai Zhang, Zhe Xu, Jin Deng, Zhen Wang, Ling Zeng, Jianxin Jiang. Alveolar epithelial type 2 cells in acute lung injury and acute respiratory distress syndrome: spatiotemporal fate and regulation. Burns & Trauma, 2025, 13 (1) : tkaf050 DOI:10.1093/burnst/tkaf050

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References

[1]

Monsel A, Zhu YG, Gennai S, Hao Q, Liu J, Lee JW. Cell-based therapy for acute organ injury: preclinical evidence and ongoing clinical trials using mesenchymal stem cells.Anesthesiology. 2014; 121: 1099-121. https://doi.org/10.1097/ALN.0000000000000446.

[2]

Meyer NJ, Gattinoni L, Calfee CS. Acute respiratory distress syndrome. Lancet. 2021; 398: 622-37. https://doi.org/10.1016/S0140-6736(21)00439-6.

[3]

Fan E, Brodie D, Slutsky AS. Acute respiratory distress syndrome: advances in diagnosis and treatment. Jama. 2018; 319: 698-710. https://doi.org/10.1001/jama.2017.21907.

[4]

Bellani G, Laffey JG, Pham T, Fan E, Brochard L, Esteban A, et al. Epidemiology, patterns of care, and mortality for patients with acute respiratory distress syndrome in intensive care units in 50 countries. JAMA. 2016; 315: 788-800. https://doi.org/10.1001/jama.2016.0291.

[5]

Wang Q, Deng J, Sun J, Zhang H, Liu D, Gao C, et al. PDGFR kinase inhibitor protects against septic death via regulation of BTLA. Sci China Life Sci. 2022; 65: 1917-28. https://doi.org/10.1007/s11427-021-2136-y.

[6]

Alysandratos KD, Herriges MJ, Kotton DN. Epithelial stem and progenitor cells in lung repair and regeneration. Annu Rev Physiol. 2021; 83: 529-50.

[7]

Barkauskas CE, Cronce MJ, Rackley CR, Bowie EJ, Keene DR, Stripp BR, et al. Type 2 alveolar cells are stem cells in adult lung. J Clin Invest. 2013; 123: 3025-36. https://doi.org/10.1172/JCI68782.

[8]

Kim CF, Jackson EL, Woolfenden AE, Lawrence S, Babar I, Vogel S, et al. Identification of bronchioalveolar stem cells in normal lung and lung cancer. Cell. 2005; 121: 823-35. https://doi.org/10.1016/j.cell.2005.03.032.

[9]

Giangreco A, Reynolds SD, Stripp BR. Terminal bronchioles harbor a unique airway stem cell population that localizes to the bronchoalveolar duct junction. Am J Pathol. 2002; 161: 173-82.

[10]

Liu Q, Liu K, Cui G, Huang X, Yao S, Guo W, et al. Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction. Nat Genet. 2019; 51: 728-38. https://doi.org/10.1038/s41588-019-0346-6.

[11]

Zuo W, Zhang T, Wu DZ, Guan SP, Liew AA, Yamamoto Y, et al. p63(+)Krt5(+) distal airway stem cells are essential for lung regeneration. Nature. 2015; 517: 616-20. https://doi.org/10.1038/nature13903.

[12]

Jain R, Barkauskas CE, Takeda N, Bowie EJ, Aghajanian H, Wang Q, et al. Plasticity of Hopx+ type I alveolar cells to regenerate type II cells in the lung. Nat Commun. 2015; 6: 6727. https://doi.org/10.1038/ncomms7727.

[13]

Wang Y, Tang Z, Huang H, Li J, Wang Z, Yu Y, et al. Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate. Proc Natl Acad Sci USA. 2018; 115: 2407-12. https://doi.org/10.1073/pnas.1719474115.

[14]

Liu K, Meng X, Liu Z, Tang M, Lv Z, Huang X, et al. Tracing the origin of alveolar stem cells in lung repair and regeneration. Cell. 2024; 187: 2428-2445.e20. https://doi.org/10.1016/j.cell.2024.03.010.

[15]

Vaughan AE, Brumwell AN, Xi Y, Gotts JE, Brownfield DG, Treutlein B, et al. Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury. Nature. 2015; 517: 621-5. https://doi.org/10.1038/nature14112.

[16]

Xi Y, Kim T, Brumwell AN, Driver IH, Wei Y, Tan V, et al. Local lung hypoxia determines epithelial fate decisions during alveolar regeneration. Nat Cell Biol. 2017; 19: 904-14. https://doi.org/10.1038/ncb3580.

[17]

Ray S, Chiba N, Yao C, Guan X, McConnell AM, Brockway B, et al. Rare SOX2(+) airway progenitor cells generate KRT5(+) cells that repopulate damaged alveolar parenchyma following influenza virus infection. Stem Cell Reports. 2016; 7: 817-25. https://doi.org/10.1016/j.stemcr.2016.09.010.

[18]

Tanaka Y, Yamaguchi M, Hirai S, Sumi T, Tada M, Saito A, et al. Characterization of distal airway stem-like cells expressing N-terminally truncated p63 and thyroid transcription factor-1 in the human lung. Exp Cell Res. 2018; 372: 141-9.

[19]

Basil MC, Cardenas-Diaz FL, Kathiriya JJ, Morley MP, Carl J, Brumwell AN, et al. Human distal airways contain a multipotent secretory cell that can regenerate alveoli. Nature. 2022; 604: 120-6. https://doi.org/10.1038/s41586-022-04552-0.

[20]

Kathiriya JJ, Brumwell AN, Jackson JR, Tang X, Chapman HA. Distinct airway epithelial stem cells Hide among Club cells but mobilize to promote alveolar regeneration. Cell Stem Cell. 2020; 26: 346-358.e4. https://doi.org/10.1016/j.stem.2019.12.014.

[21]

Lv Z, Liu Z, Liu K, Lin X, Pu W, Li Y, et al. Alveolar regeneration by airway secretory-cell-derived p63(+) progenitors. Cell Stem Cell. 2024; 31: 1685-1700.e6. https://doi.org/10.1016/j.stem.2024.08.005.

[22]

Zacharias WJ, Frank DB, Zepp JA, Morley MP, Alkhaleel FA, Kong J, et al. Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor. Nature. 2018; 555: 251-5. https://doi.org/10.1038/nature25786.

[23]

Cardenas-Diaz FL, Liberti DC, Leach JP, Babu A, Barasch J, Shen T, et al. Temporal and spatial staging of lung alveolar regeneration is determined by the grainyhead transcription factor Tfcp2l1. Cell Rep. 2023; 42: 112451. https://doi.org/10.1016/j.celrep.2023.112451.

[24]

Liberti DC, Kremp MM, Liberti WA, 3rd, Penkala IJ, Li S, Zhou S, et al. Alveolar epithelial cell fate is maintained in a spatially restricted manner to promote lung regeneration after acute injury. Cell Rep. 2021; 35: 109092. https://doi.org/10.1016/j.celrep.2021.109092.

[25]

Basil MC, Katzen J, Engler AE, Guo M, Herriges MJ, Kathiriya JJ, et al. The cellular and physiological basis for lung repair and regeneration: past, present, and future. Cell Stem Cell. 2020; 26: 482-502. https://doi.org/10.1016/j.stem.2020.03.009.

[26]

Hu C, Sun J, Du J, Wen D, Lu H, Zhang H, et al. The hippo-YAP pathway regulates the proliferation of alveolar epithelial progenitors after acute lung injury. Cell Biol Int. 2019; 43: 1174-83. https://doi.org/10.1002/cbin.11098.

[27]

Kotwica-Mojzych K, Jodlowska-Jedrych B, Mojzych M. CD200:CD200R interactions and their importance in immunoregulation. Int J Mol Sci. 2021; 22: 1602. https://doi.org/10.3390/ijms22041602.

[28]

Holt PG, Strickland DH. The CD200-CD200R axis in local control of lung inflammation. Nat Immunol. 2008; 9: 1011-3. https://doi.org/10.1038/ni0908-1011.

[29]

Snelgrove RJ, Goulding J, Didierlaurent AM, Lyonga D, Vekaria S, Edwards L, et al. A critical function for CD200 in lung immune homeostasis and the severity of influenza infection. Nat Immunol. 2008; 9: 1074-83. https://doi.org/10.1038/ni.1637.

[30]

Patoine D, Bouchard K, Lemay AM, Bissonnette EY, Lauzon-Joset JF. Specificity of CD200/CD200R pathway in LPS-induced lung inflammation. Front Immunol. 2022; 13: 1092126.

[31]

Sahu SK, Ozanturk AN, Kulkarni DH, Ma L, Barve RA, Dannull L, et al. Lung epithelial cell-derived C3 protects against pneumonia-induced lung injury. Sci Immunol. 2023; 8: eabp9547.

[32]

Hasegawa K, Sato A, Tanimura K, Uemasu K, Hamakawa Y, Fuseya Y, et al. Fraction of MHCII and EpCAM expression characterizes distal lung epithelial cells for alveolar type 2 cell isolation. Respir Res. 2017; 18: 150. https://doi.org/10.1186/s12931-017-0635-5.

[33]

Shenoy AT, Lyon De Ana C, Arafa EI, Salwig I, Barker KA, Korkmaz FT, et al. Antigen presentation by lung epithelial cells directs CD4(+) T(RM) cell function and regulates barrier immunity. Nat Commun. 2021; 12: 5834.

[34]

Nabhan AN, Brownfield DG, Harbury PB, Krasnow MA, Desai TJ. Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells. Science. 2018; 359: 1118-23. https://doi.org/10.1126/science.aam6603.

[35]

Finn J, Sottoriva K, Pajcini KV, Kitajewski JK, Chen C, Zhang W, et al. Dlk1-mediated temporal regulation of notch Signaling is required for differentiation of alveolar type II to type I cells during repair. Cell Rep. 2019; 26: 2942-2954.e5. https://doi.org/10.1016/j.celrep.2019.02.046.

[36]

Chung MI, Bujnis M, Barkauskas CE, Kobayashi Y, Hogan BLM. Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation. Development. 2018; 145: dev163014. https://doi.org/10.1242/dev.163014.

[37]

Choi J, Park JE, Tsagkogeorga G, Yanagita M, Koo BK, Han N, et al. Inflammatory signals induce AT2 cell-derived damage-associated transient progenitors that mediate alveolar regeneration. Cell Stem Cell. 2020; 27: 366-382.e7. https://doi.org/10.1016/j.stem.2020.06.020.

[38]

Katzen J, Rodriguez L, Tomer Y, Babu A, Zhao M, Murthy A, et al. Disruption of proteostasis causes IRE1 mediated reprogramming of alveolar epithelial cells. Proc Natl Acad Sci USA. 2022; 119:e2123187119. https://doi.org/10.1073/pnas.2123187119.

[39]

Han S, Lee M, Shin Y, Giovanni R, Chakrabarty RP, Herrerias MM, et al. Mitochondrial integrated stress response controls lung epithelial cell fate. Nature. 2023; 620: 890-7. https://doi.org/10.1038/s41586-023-06423-8.

[40]

Wang L, Chen R, Li G, Wang Z, Liu J, Liang Y, et al. FBW7 mediates senescence and pulmonary fibrosis through telomere uncapping. Cell Metab. 2020; 32: 860-877.e9. https://doi.org/10.1016/j.cmet.2020.10.004.

[41]

Shiraishi K, Shah PP, Morley MP, Loebel C, Santini GT, Katzen J, et al. Biophysical forces mediated by respiration maintain lung alveolar epithelial cell fate. Cell. 2023; 186: 1478-1492.e15. https://doi.org/10.1016/j.cell.2023.02.010.

[42]

Wu H, Yu Y, Huang H, Hu Y, Fu S, Wang Z, et al. Progressive pulmonary fibrosis is caused by elevated mechanical tension on alveolar stem cells. Cell. 2020; 180: 107-121.e17. https://doi.org/10.1016/j.cell.2019.11.027.

[43]

Jiang P, Gil de Rubio R, Hrycaj SM, Gurczynski SJ, Riemondy KA, Moore BB, et al. Ineffectual type 2-to-type 1 alveolar epithelial cell differentiation in idiopathic pulmonary fibrosis: persistence of the KRT8(hi) transitional state. Am J Respir Crit Care Med. 2020; 201: 1443-7. https://doi.org/10.1164/rccm.201909-1726LE.

[44]

Strunz M, Simon LM, Ansari M, Kathiriya JJ, Angelidis I, Mayr CH, et al. Alveolar regeneration through a Krt8 + transitional stem cell state that persists in human lung fibrosis. Nat Commun. 2020; 11: 3559. https://doi.org/10.1038/s41467-020-17358-3.

[45]

Kathiriya JJ, Wang C, Zhou M, Brumwell A, Cassandras M, Le Saux CJ, et al. Human alveolar type 2 epithelium transdifferentiates into metaplastic KRT5(+) basal cells. Nat Cell Biol. 2022; 24: 10-23. https://doi.org/10.1038/s41556-021-00809-4.

[46]

Wang F, Ting C, Riemondy KA, Douglas M, Foster K, Patel N, et al. Regulation of epithelial transitional states in murine and human pulmonary fibrosis. J Clin Invest. 2023; 133:e165612. https://doi.org/10.1172/JCI165612.

[47]

Riemondy KA, Jansing NL, Jiang P, Redente EF, Gillen AE, Fu R, et al. Single cell RNA sequencing identifies TGFbeta as a key regenerative cue following LPS-induced lung injury. JCI Insight. 2019; 5: e123637.

[48]

Duvigneau JC, Luis A, Gorman AM, Samali A, Kaltenecker D, Moriggl R, et al. Crosstalk between inflammatory mediators and endoplasmic reticulum stress in liver diseases. Cytokine. 2019; 124: 154577. https://doi.org/10.1016/j.cyto.2018.10.018.

[49]

Auyeung VC, Downey MS, Thamsen M, Wenger TA, Backes BJ, Sheppard D, et al. IRE1alpha drives lung epithelial progenitor dysfunction to establish a niche for pulmonary fibrosis. Am J Physiol Lung Cell Mol Physiol. 2022; 322: L564-80. https://doi.org/10.1152/ajplung.00408.2021.

[50]

Kobayashi Y, Tata A, Konkimalla A, Katsura H, Lee RF, Ou J, et al. Persistence of a regeneration-associated, transitional alveolar epithelial cell state in pulmonary fibrosis. Nat Cell Biol. 2020; 22: 934-46. https://doi.org/10.1038/s41556-020-0542-8.

[51]

Frangogiannis N. Transforming growth factor-β in tissue fibrosis. J Exp Med. 2020; 217: e20190103.

[52]

Willis BC, Liebler JM, Luby-Phelps K, Nicholson AG, Crandall ED, du Bois RM, et al. Induction of epithelial-mesenchymal transition in alveolar epithelial cells by transforming growth factor-beta1: potential role in idiopathic pulmonary fibrosis. Am J Pathol. 2005; 166: 1321-32. https://doi.org/10.1016/S0002-9440(10)62351-6.

[53]

Zhao L, Yee M, O’Reilly MA. Transdifferentiation of alveolar epithelial type II to type I cells is controlled by opposing TGF-β and BMP signaling. Am J Physiol Lung Cell Mol Physiol. 2013; 305: L409-18. https://doi.org/10.1152/ajplung.00032.2013.

[54]

Kim B, Huang Y, Ko KP, Zhang S, Zou G, Zhang J, et al. PCLAF-DREAM drives alveolar cell plasticity for lung regeneration. Nat Commun. 2024; 15: 9169. https://doi.org/10.1038/s41467-024-53330-1.

[55]

Chen J, Wu H, Yu Y, Tang N. Pulmonary alveolar regeneration in adult COVID-19 patients. Cell Res. 2020; 30: 708-10. https://doi.org/10.1038/s41422-020-0369-7.

[56]

Kadur Lakshminarasimha Murthy P, Sontake V, Tata A, Kobayashi Y, Macadlo L, Okuda K, et al. Human distal lung maps and lineage hierarchies reveal a bipotent progenitor. Nature. 2022; 604: 111-9. https://doi.org/10.1038/s41586-022-04541-3.

[57]

Zhao R, Wang Z, Wang G, Geng J, Wu H, Liu X, et al. Sustained amphiregulin expression in intermediate alveolar stem cells drives progressive fibrosis. Cell Stem Cell. 2024; 31: 1344-1358.e6.

[58]

Konkimalla A, Konishi S, Macadlo L, Kobayashi Y, Farino ZJ, Miyashita N, et al. Transitional cell states sculpt tissue topology during lung regeneration. Cell Stem Cell. 2023; 30: 1486-1502.e9. https://doi.org/10.1016/j.stem.2023.10.001.

[59]

Mayr CH, Sengupta A, Asgharpour S, Ansari M, Pestoni JC, Ogar P, et al. Sfrp1 inhibits lung fibroblast invasion during transition to injury-induced myofibroblasts. Eur Respir J. 2024; 63: 2301326. https://doi.org/10.1183/13993003.01326-2023.

[60]

Olivera WG, Ridge KM, Sznajder JI. Lung liquid clearance and Na,K-ATPase during acute hyperoxia and recovery in rats. Am J Respir Crit Care Med. 1995; 152: 1229-34. https://doi.org/10.1164/ajrccm.152.4.7551375.

[61]

Hamacher J, Hadizamani Y, Borgmann M, Mohaupt M, Männel DN, Moehrlen U, et al. Cytokine-Ion Channel interactions in pulmonary inflammation. Front Immunol. 2017; 8: 1644. https://doi.org/10.3389/fimmu.2017.01644.

[62]

Zhang JJ, Dong X, Liu GH, Gao YD. Risk and protective factors for COVID-19 morbidity, severity, and mortality. Clin Rev Allergy Immunol. 2023; 64: 90-107. https://doi.org/10.1007/s12016-022-08921-5.

[63]

Hecker L, Logsdon NJ, Kurundkar D, Kurundkar A, Bernard K, Hock T, et al. Reversal of persistent fibrosis in aging by targeting Nox4-Nrf2 redox imbalance. Sci Transl Med. 2014; 6: 231ra47.

[64]

Schafer MJ, White TA, Iijima K, Haak AJ, Ligresti G, Atkinson EJ, et al. Cellular senescence mediates fibrotic pulmonary disease. Nat Commun. 2017; 8: 14532.

[65]

Yin L, Zheng D, Limmon GV, Leung NH, Xu S, Rajapakse JC, et al. Aging exacerbates damage and delays repair of alveolar epithelia following influenza viral pneumonia. Respir Res. 2014; 15: 116. https://doi.org/10.1186/s12931-014-0116-z.

[66]

Morales-Nebreda L, Helmin KA, Torres Acosta MA, Markov NS, Hu JY, Joudi AM, et al. Aging imparts cell-autonomous dysfunction to regulatory T cells during recovery from influenza pneumonia. JCI Insight. 2021; 6:e141690.

[67]

Paxson JA, Gruntman A, Parkin CD, Mazan MR, Davis A, Ingenito EP, et al. Age-dependent decline in mouse lung regeneration with loss of lung fibroblast clonogenicity and increased myofibroblastic differentiation. PLoS One. 2011; 6: e23232. https://doi.org/10.1371/journal.pone.0023232.

[68]

Chen Y, Pu Q, Ma Y, Zhang H, Ye T, Zhao C, et al. Aging reprograms the hematopoietic-vascular niche to impede regeneration and promote fibrosis. Cell Metab. 2021; 33: 395-410.e4. https://doi.org/10.1016/j.cmet.2020.11.019.

[69]

Parimon T, Chen P, Stripp BR, Liang J, Jiang D, Noble PW, et al. Senescence of alveolar epithelial progenitor cells: a critical driver of lung fibrosis. Am J Physiol Cell Physiol. 2023; 325: C483-95.

[70]

Yazicioglu T, Muhlfeld C, Autilio C, Huang CK, Bar C, Dittrich-Breiholz O, et al. Aging impairs alveolar epithelial type II cell function in acute lung injury. Am J Physiol Lung Cell Mol Physiol. 2020; 319: L755-69. https://doi.org/10.1152/ajplung.00093.2020.

[71]

Han S, Budinger GRS, Gottardi CJ. Alveolar epithelial regeneration in the aging lung. J Clin Invest. 2023; 133: e170504. https://doi.org/10.1172/JCI170504.

[72]

Chun-On P, Hinchie AM, Beale HC, Gil Silva AA, Rush E, Sander C, et al. TPP1 promoter mutations cooperate with TERT promoter mutations to lengthen telomeres in melanoma. Science. 2022; 378: 664-8. https://doi.org/10.1126/science.abq0607.

[73]

Sekne Z, Ghanim GE, van Roon AM, Nguyen THD. Structural basis of human telomerase recruitment by TPP1-POT1. Science. 2022; 375: 1173-6. https://doi.org/10.1126/science.abn6840.

[74]

Rowbotham SP, Pessina P, Garcia-de-Alba C, Jensen J, Nguyen Y, Yoon J, et al. Age-associated H3K9me2 loss alters the regenerative equilibrium between murine lung alveolar and bronchiolar progenitors. Dev Cell. 2023; 58: 2974-2991.e6. https://doi.org/10.1016/j.devcel.2023.10.011.

[75]

Schneider JL, Rowe JH, Garcia-de-Alba C, Kim CF, Sharpe AH, Haigis MC. The aging lung: physiology, disease, and immunity. Cell. 2021; 184: 1990-2019. https://doi.org/10.1016/j.cell.2021.03.005.

[76]

Angelidis I, Simon LM, Fernandez IE, Strunz M, Mayr CH, Greiffo FR, et al. An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics. Nat Commun. 2019; 10: 963. https://doi.org/10.1038/s41467-019-08831-9.

[77]

Borok Z, Horie M, Flodby P, Wang H, Liu Y, Ganesh S, et al. Grp78 loss in epithelial progenitors reveals an age-linked role for endoplasmic reticulum stress in pulmonary fibrosis. Am J Respir Crit Care Med. 2020; 201: 198-211. https://doi.org/10.1164/rccm.201902-0451OC.

[78]

Planer JD, Morrisey EE. After the storm: regeneration, repair, and reestablishment of homeostasis between the alveolar epithelium and innate immune system following viral lung injury. Annu Rev Pathol. 2023; 18: 337-59. https://doi.org/10.1146/annurev-pathmechdis-031621-024344.

[79]

Gillich A, Zhang F, Farmer CG, Travaglini KJ, Tan SY, Gu M, et al. Capillary cell-type specialization in the alveolus. Nature. 2020; 586: 785-9. https://doi.org/10.1038/s41586-020-2822-7.

[80]

Gokey JJ, Snowball J, Green J, Waltamath M, Spinney JJ, Black KE, et al. Pretreatment of aged mice with retinoic acid supports alveolar regeneration via upregulation of reciprocal PDGFA signalling. Thorax. 2021; 76: 456-67. https://doi.org/10.1136/thoraxjnl-2020-214986.

[81]

Strzyz P. Senescent fibroblasts support lung repair. Nat Rev Mol Cell Biol. 2022; 23: 775. https://doi.org/10.1038/s41580-022-00559-7.

[82]

Reyes NS, Krasilnikov M, Allen NC, Lee JY, Hyams B, Zhou M, et al. Sentinel p16(INK4a+) cells in the basement membrane form a reparative niche in the lung. Science. 2022; 378: 192-201. https://doi.org/10.1126/science.abf3326.

[83]

Lee JY, Reyes NS, Ravishankar S, Zhou M, Krasilnikov M, Ringler C, et al. An in vivo screening platform identifies senolytic compounds that target p16INK4a+ fibroblasts in lung fibrosis. J Clin Invest. 2024; 134: e173371. https://doi.org/10.1172/JCI173371.

[84]

Zysman M, Baptista BR, Essari LA, Taghizadeh S, Thibault de Menonville C, Giffard C, et al. Targeting p16(INK4a) promotes Lipofibroblasts and alveolar regeneration after early-life injury. Am J Respir Crit Care Med. 2020; 202: 1088-104. https://doi.org/10.1164/rccm.201908-1573OC.

[85]

Kaiser KA, Loffredo LF, Santos-Alexis KL, Ringham OR, Arpaia N. Regulation of the alveolar regenerative niche by amphiregulin-producing regulatory T cells. J Exp Med. 2023; 220: e20221462. https://doi.org/10.1084/jem.20221462.

[86]

Arpaia N, Green JA, Moltedo B, Arvey A, Hemmers S, Yuan S, et al. A distinct function of regulatory T cells in tissue protection. Cell. 2015; 162: 1078-89. https://doi.org/10.1016/j.cell.2015.08.021.

[87]

Dial CF, Tune MK, Doerschuk CM, Mock JR. Foxp3(+) regulatory T cell expression of keratinocyte growth factor enhances lung epithelial proliferation. Am J Respir Cell Mol Biol. 2017; 57: 162-73. https://doi.org/10.1165/rcmb.2017-0019OC.

[88]

Cheng P, Li S, Chen H. Macrophages in lung injury, repair, and fibrosis. Cells. 2021; 10: 436. https://doi.org/10.3390/cells10020436.

[89]

McQuattie-Pimentel AC, Ren Z, Joshi N, Watanabe S, Stoeger T, Chi M, et al. The lung microenvironment shapes a dysfunctional response of alveolar macrophages in aging. J Clin Invest. 2021; 131: e140299. https://doi.org/10.1172/JCI140299.

[90]

Birch HL.Extracellular matrix and ageing. Subcell Biochem. 2018; 90: 169-90. https://doi.org/10.1007/978-981-13-2835-0_7.

[91]

Onursal C, Dick E, Angelidis I, Schiller HB, Staab-Weijnitz CA. Collagen biosynthesis, processing, and maturation in lung ageing. Front Med (Lausanne). 2021; 8: 593874.

[92]

Sicard D, Haak AJ, Choi KM, Craig AR, Fredenburgh LE, Tschumperlin DJ. Aging and anatomical variations in lung tissue stiffness. Am J Physiol Lung Cell Mol Physiol. 2018; 314: L946-55. https://doi.org/10.1152/ajplung.00415.2017.

[93]

Liu Z, Wu H, Jiang K, Wang Y, Zhang W, Chu Q, et al. MAPK-mediated YAP activation controls mechanical-tension-induced pulmonary alveolar regeneration. Cell Rep. 2016; 16: 1810-9. https://doi.org/10.1016/j.celrep.2016.07.020.

[94]

He P, Lim K, Sun D, Pett JP, Jeng Q, Polanski K, et al. A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates. Cell. 2022; 185: 4841-4860.e25. https://doi.org/10.1016/j.cell.2022.11.005.

[95]

Hirsch MS, Hildebrand CB, Geltinger F, Pich A, Mühlfeld C, Wedekind D, et al. Senescence in alveolar epithelial type II cells promotes acute lung injury and impairs regeneration. Am J Respir Cell Mol Biol. 2024; 71: 688-701.

[96]

Hong KU, Reynolds SD, Watkins S, Fuchs E, Stripp BR. Basal cells are a multipotent progenitor capable of renewing the bronchial epithelium. Am J Pathol. 2004; 164: 577-88. https://doi.org/10.1016/S0002-9440(10)63147-1.

[97]

Hong KU, Reynolds SD, Watkins S, Fuchs E, Stripp BR. In vivo differentiation potential of tracheal basal cells: evidence for multipotent and unipotent subpopulations. Am J Physiol Lung Cell Mol Physiol. 2004; 286: L643-9. https://doi.org/10.1152/ajplung.00155.2003.

[98]

Rock JR, Onaitis MW, Rawlins EL, Lu Y, Clark CP, Xue Y, et al. Basal cells as stem cells of the mouse trachea and human airway epithelium. Proc Natl Acad Sci USA. 2009; 106: 12771-5. https://doi.org/10.1073/pnas.0906850106.

[99]

Hong KU, Reynolds SD, Giangreco A, Hurley CM, Stripp BR. Clara cell secretory protein-expressing cells of the airway neuroepithelial body microenvironment include a label-retaining subset and are critical for epithelial renewal after progenitor cell depletion. Am J Respir Cell Mol Biol. 2001; 24: 671-81. https://doi.org/10.1165/ajrcmb.24.6.4498.

[100]

Rawlins EL, Okubo T, Xue Y, Brass DM, Auten RL, Hasegawa H, et al. The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium. Cell Stem Cell. 2009; 4: 525-34. https://doi.org/10.1016/j.stem.2009.04.002.

[101]

Tata PR, Mou H, Pardo-Saganta A, Zhao R, Prabhu M, Law BM, et al. Dedifferentiation of committed epithelial cells into stem cells in vivo. Nature. 2013; 503: 218-23. https://doi.org/10.1038/nature12777.

[102]

Desai TJ, Brownfield DG, Krasnow MA. Alveolar progenitor and stem cells in lung development, renewal and cancer. Nature. 2014; 507: 190-4. https://doi.org/10.1038/nature12930.

[103]

Kumar PA, Hu Y, Yamamoto Y, Hoe NB, Wei TS, Mu D, et al. Distal airway stem cells yield alveoli in vitro and during lung regeneration following H1N1 influenza infection. Cell. 2011; 147: 525-38. https://doi.org/10.1016/j.cell.2011.10.001.

[104]

Sun J, Zhang H, Liu D, Liu W, Du J, Wen D, et al. CTGF promotes the repair and regeneration of alveoli after acute lung injury by promoting the proliferation of subpopulation of AEC2s. Respir Res. 2023; 24: 227. https://doi.org/10.1186/s12931-023-02512-4.

[105]

Enomoto Y, Katsura H, Fujimura T, Ogata A, Baba S, Yamaoka A, et al. Autocrine TGF-β-positive feedback in profibrotic AT2-lineage cells plays a crucial role in non-inflammatory lung fibrogenesis. Nat Commun. 2023; 14: 4956. https://doi.org/10.1038/s41467-023-40617-y.

[106]

Li S, Zhou X, Zeng R, Lin L, Zou X, Yan Y, et al. YAP1 silencing attenuated lung injury/fibrosis but worsened diaphragmatic function by regulating oxidative stress and inflammation response in mice. Free Radic Biol Med. 2022; 193: 485-98.

[107]

Valentine MS, Link PA, Herbert JA, Kamga Gninzeko FJ, Schneck MB, Shankar K, et al. Inflammation and monocyte recruitment due to aging and mechanical stretch in alveolar epithelium are inhibited by the molecular chaperone 4-phenylbutyrate. Cell Mol Bioeng. 2018; 11: 495-508. https://doi.org/10.1007/s12195-018-0537-8.

[108]

Zepp JA, Morrisey EE. Cellular crosstalk in the development and regeneration of the respiratory system. Nat Rev Mol Cell Biol. 2019; 20: 551-66. https://doi.org/10.1038/s41580-019-0141-3.

[109]

Abler LL, Mansour SL, Sun X. Conditional gene inactivation reveals roles for Fgf10 and Fgfr2 in Establishing a normal pattern of epithelial branching in the mouse lung. Developmental dynamics: an official publication of the American Association of Anatomists. 2009; 238: 1999-2013. https://doi.org/10.1002/dvdy.22032.

[110]

Morrisey EE, Hogan BLM. Preparing for the first breath: genetic and cellular mechanisms in lung development. Dev Cell. 2010; 18: 8-23. https://doi.org/10.1016/j.devcel.2009.12.010.

[111]

Lee JH, Tammela T, Hofree M, Choi J, Marjanovic ND, Han S, et al. Anatomically and functionally distinct lung mesenchymal populations marked by Lgr5 and Lgr6. Cell. 2017; 170: 1149-1163.e12. https://doi.org/10.1016/j.cell.2017.07.028.

[112]

Zepp JA, Zacharias WJ, Frank DB, Cavanaugh CA, Zhou S, Morley MP, et al. Distinct mesenchymal lineages and niches promote epithelial self-renewal and Myofibrogenesis in the lung. Cell. 2017; 170: 1134-1148.e10. https://doi.org/10.1016/j.cell.2017.07.034.

[113]

Trempus CS, Papas BN, Sifre MI, Bortner CD, Scappini E, Tucker CJ, et al. Functional Pdgfra fibroblast heterogeneity in normal and fibrotic mouse lung. JCI Insight. 2023; 8:e164380. https://doi.org/10.1172/jci.insight.164380.

[114]

Gao F, Li C, Danopoulos S, Al Alam D, Peinado N, Webster S, et al. Hedgehog-responsive PDGFRa(+) fibroblasts maintain a unique pool of alveolar epithelial progenitor cells during alveologenesis. Cell Rep. 2022; 39: 110608. https://doi.org/10.1016/j.celrep.2022.110608.

[115]

Lechner AJ, Driver IH, Lee J, Conroy CM, Nagle A, Locksley RM, et al. Recruited monocytes and type 2 immunity promote lung regeneration following pneumonectomy. Cell Stem Cell. 2017; 21: 120-134.e7. https://doi.org/10.1016/j.stem.2017.03.024.

[116]

Westphalen K, Gusarova GA, Islam MN, Subramanian M, Cohen TS, Prince AS, et al. Sessile alveolar macrophages communicate with alveolar epithelium to modulate immunity. Nature. 2014; 506: 503-6. https://doi.org/10.1038/nature12902.

[117]

Islam MN, Das SR, Emin MT, Wei M, Sun L, Westphalen K, et al. Mitochondrial transfer from bone-marrow-derived stromal cells to pulmonary alveoli protects against acute lung injury. Nat Med. 2012; 18: 759-65. https://doi.org/10.1038/nm.2736.

[118]

Baysoy A, Bai Z, Satija R, Fan R. The technological landscape and applications of single-cell multi-omics. Nat Rev Mol Cell Biol. 2023; 24: 695-713. https://doi.org/10.1038/s41580-023-00615-w.

[119]

Wang WJ, Chu LX, He LY, Zhang MJ, Dang KT, Gao C, et al. Spatial transcriptomics: recent developments and insights in respiratory research. Military Medical Research. 2023; 10: 38. https://doi.org/10.1186/s40779-023-00471-x.

[120]

Farber DL, Sims PA. Dissecting lung development and fibrosis at single-cell resolution. Genome Medicine. 2019; 11: 33. https://doi.org/10.1186/s13073-019-0645-7.

[121]

Rao A, Barkley D, França GS, Yanai I. Exploring tissue architecture using spatial transcriptomics. Nature. 2021; 596: 211-20. https://doi.org/10.1038/s41586-021-03634-9.

[122]

Yao C, Guan X, Carraro G, Parimon T, Liu X, Huang G, et al. Senescence of alveolar type 2 cells drives progressive pulmonary fibrosis. Am J Respir Crit Care Med. 2021; 203: 707-17. https://doi.org/10.1164/rccm.202004-1274OC.

[123]

Habermann AC, Gutierrez AJ, Bui LT, Yahn SL, Winters NI, Calvi CL, et al. Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis. Sci Adv. 2020; 6:eaba1972.

[124]

Boyd DF, Allen EK, Randolph AG, Guo XJ, Weng Y, Sanders CJ, et al. Exuberant fibroblast activity compromises lung function via ADAMTS4. Nature. 2020; 587: 466-71. https://doi.org/10.1038/s41586-020-2877-5.

[125]

Ljungberg MC, Sadi M, Wang Y, Aronow BJ, Xu Y, Kao RJ, et al. Spatial distribution of marker gene activity in the mouse lung during alveolarization. Data in Brief. 2019; 22: 365-72. https://doi.org/10.1016/j.dib.2018.10.150.

[126]

Sountoulidis A, Marco Salas S, Braun E, Avenel C, Bergenstråhle J, Theelke J, et al. A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung. Nat Cell Biol. 2023; 25: 351-65. https://doi.org/10.1038/s41556-022-01064-x.

[127]

Cao S, Feng H, Yi H, Pan M, Lin L, Zhang YS, et al. Single-cell RNA sequencing reveals the developmental program underlying proximal-distal patterning of the human lung at the embryonic stage. Cell Res. 2023; 33: 421- 33. https://doi.org/10.1038/s41422-023-00802-6.

[128]

Treutlein B, Brownfield DG, Wu AR, Neff NF, Mantalas GL, Espinoza FH, et al. Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature. 2014; 509: 371-5. https://doi.org/10.1038/nature13173.

[129]

Miller AJ, Yu Q, Czerwinski M, Tsai YH, Conway RF, Wu A, et al. In vitro and in vivo development of the human airway at single-cell resolution. Dev Cell. 2020; 53: 117-128.e6. https://doi.org/10.1016/j.devcel.2020.01.033.

[130]

Frank DB, Penkala IJ, Zepp JA, Sivakumar A, Linares-Saldana R, Zacharias WJ, et al. Early lineage specification defines alveolar epithelial ontogeny in the murine lung. Proc Natl Acad Sci USA. 2019; 116: 4362-71. https://doi.org/10.1073/pnas.1813952116.

[131]

Calabrese F, Lunardi F, Tauro V, Pezzuto F, Fortarezza F, Vedovelli L, et al. RNA sequencing of epithelial cell/fibroblastic foci sandwich in idiopathic pulmonary fibrosis: new insights on the Signaling pathway. Int J Mol Sci. 2022; 23: 3323. https://doi.org/10.3390/ijms23063323.

[132]

Dinnon KH, 3rd, Leist SR, Okuda K, Dang H, Fritch EJ, Gully KL, et al. SARS-CoV-2 infection produces chronic pulmonary epithelial and immune cell dysfunction with fibrosis in mice. Sci Transl Med. 2022; 14: eabo5070.

[133]

Sounart H, Lázár E, Masarapu Y, Wu J, Várkonyi T, Glasz T, et al. Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections. Genome Biol. 2023; 24: 237. https://doi.org/10.1186/s13059-023-03080-y.

[134]

Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe Å, et al. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature. 2021; 595: 107-13. https://doi.org/10.1038/s41586-021-03570-8.

[135]

Franzén L, Olsson Lindvall M, Hühn M, Ptasinski V, Setyo L, Keith BP, et al. Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis. Nat Genet. 2024; 56: 1725-36. https://doi.org/10.1038/s41588-024-01819-2.

[136]

Conroy LR, Clarke HA, Allison DB, Valenca SS, Sun Q, Hawkinson TR, et al. Spatial metabolomics reveals glycogen as an actionable target for pulmonary fibrosis. Nat Commun. 2023; 14: 2759. https://doi.org/10.1038/s41467-023-38437-1.

[137]

Long Y, Yang B, Lei Q, Gao F, Chen L, Chen W, et al. Targeting senescent alveolar epithelial cells using engineered mesenchymal stem cell-derived extracellular vesicles to treat pulmonary fibrosis. ACS Nano. 2024; 18: 7046-63. https://doi.org/10.1021/acsnano.3c10547.

[138]

Gao L, Sun Y, Zhang X, Ma D, Xie A, Wang E, et al. Wnt3a-loaded extracellular vesicles promote alveolar epithelial regeneration after lung injury. Adv Sci (Weinh). 2023; 10: e2206606. https://doi.org/10.1002/advs.202206606.

[139]

Wang Y, Zhang J, Liu Y, Yue X, Han K, Kong Z, et al. Realveolarization with inhalable mucus-penetrating lipid nanoparticles for the treatment of pulmonary fibrosis in mice. Sci Adv. 2024; 10:eado4791.

[140]

Li B, Manan RS, Liang SQ, Gordon A, Jiang A, Varley A, et al. Combinatorial design of nanoparticles for pulmonary mRNA delivery and genome editing. Nat Biotechnol. 2023; 41: 1410-5. https://doi.org/10.1038/s41587-023-01679-x.

[141]

Sun Y, Chatterjee S, Lian X, Traylor Z, Sattiraju SR, Xiao Y, et al. In vivo editing of lung stem cells for durable gene correction in mice. Science. 2024; 384: 1196-202. https://doi.org/10.1126/science.adk9428.

[142]

Jin M, Liu B, Zhang Z, Mu Y, Ma L, Yao H, et al. Catechin-functionalized cationic lipopolymer based multicomponent Nanomicelles for lung-targeting delivery. Adv Mater. 2024; 36: e2302985. https://doi.org/10.1002/adma.202302985.

[143]

Tai W, Yang K, Liu Y, Li R, Feng S, Chai B, et al. A lung-selective delivery of mRNA encoding broadly neutralizing antibody against SARS-CoV-2 infection. Nat Commun. 2023; 14: 8042. https://doi.org/10.1038/s41467-023-43798-8.

[144]

Thomas SP, Domm JM, van Vloten JP, Xu L, Vadivel A, Yates JGE, et al. A promoterless AAV6.2FF-based lung gene editing platform for the correction of surfactant protein B deficiency. Mol Ther. 2023; 31: 3457-77. https://doi.org/10.1016/j.ymthe.2023.10.002.

[145]

Kang MH, van Lieshout LP, Xu L, Domm JM, Vadivel A, Renesme L, et al. A lung tropic AAV vector improves survival in a mouse model of surfactant B deficiency. Nat Commun. 2020; 11: 3929. https://doi.org/10.1038/s41467-020-17577-8.

[146]

Chaudhary N, Weissman D, Whitehead KA. mRNA vaccines for infectious diseases: principles, delivery and clinical translation. Nat Rev Drug Discov. 2021; 20: 817-38. https://doi.org/10.1038/s41573-021-00283-5.

[147]

Huang T, Lin R, Su Y, Sun H, Zheng X, Zhang J, et al. Efficient intervention for pulmonary fibrosis via mitochondrial transfer promoted by mitochondrial biogenesis. Nat Commun. 2023; 14: 5781. https://doi.org/10.1038/s41467-023-41529-7.

[148]

Wang Y, Hu LF, Liu NH, Yang JS, Xing L, Jeong JH, et al. Mitophagy-enhanced nanoparticle-engineered mitochondria restore homeostasis of mitochondrial pool for alleviating pulmonary fibrosis. ACS Nano. 2024; 18: 32705-22. https://doi.org/10.1021/acsnano.4c10328.

[149]

Ertl HCJ.Immunogenicity and toxicity of AAV gene therapy. Front Immunol. 2022; 13: 975803. https://doi.org/10.3389/fimmu.2022.975803.

[150]

Moghimi SM, Simberg D. Pro-inflammatory concerns with lipid nanoparticles. Mol Ther. 2022; 30: 2109-10. https://doi.org/10.1016/j.ymthe.2022.04.011.

[151]

Bai X, Chen Q, Li F, Teng Y, Tang M, Huang J, et al. Optimized inhaled LNP formulation for enhanced treatment of idiopathic pulmonary fibrosis via mRNA-mediated antibody therapy. Nat Commun. 2024; 15: 6844. https://doi.org/10.1038/s41467-024-51056-8.

[152]

Haley RM, Padilla MS, El-Mayta RD, Joseph RA, Weber JA, Figueroa-Espada CG, et al. Lipid nanoparticles for In vivo lung delivery of CRISPR-Cas9 ribonucleoproteins allow gene editing of clinical targets. ACS Nano. 2025; 19: 13790-804. https://doi.org/10.1021/acsnano.4c16617.

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