Human growth plates house resting zone sub-populations with features of quiescent stem cells

Mahtab Avijgan , Ana R. López-Pérez , Leire Alonso Galicia , Jose G. Marchan-Alvarez , Laura Sudupe , Ruihan Zhou , Amal Nazaraliyev , Žaneta Andrusivová , Ludvig Larsson , Pâmella Miranda , Doste R. Mamand , Yunhan Zhao , Farasat Zaman , Hong Qian , Klas Blomgren , Felipe Prosper , Oscar P. B. Wiklander , Jesper N. Tegner , Joakim Lundeberg , Lars Sävendahl , Reza Mirzazadeh , David Gomez-Cabrero , Phillip T. Newton

Bone Research ›› 2026, Vol. 14 ›› Issue (1) : 79

PDF
Bone Research ›› 2026, Vol. 14 ›› Issue (1) :79 DOI: 10.1038/s41413-026-00564-y
Article
research-article
Human growth plates house resting zone sub-populations with features of quiescent stem cells
Author information +
History +
PDF

Abstract

Maintaining postnatal bone growth is crucial for humans to reach their final height. To determine transcriptional networks coordinating this process, we applied spatially resolved transcriptomics to growth plate biopsies obtained from healthy adolescents who underwent epiphysiodesis surgery for idiopathic tall stature. Spatial profiling revealed new markers for each zone of the human growth plate and identified genes associated with poorly understood growth disorders, including the novel hypertrophic zone marker SGMS2. We elaborated on this finding and established that Sgms2 is present in growth plate-derived matrix vesicles, and its activity facilitates mineralization - a process impaired in patients with SGMS2 mutations. By exploring the low transcriptional activity of resting zone chondrocytes, we found that a subset of these cells exists in a functionally quiescent state in vivo, as determined by their predominantly nuclear mRNA, abundant heterochromatin, and ability to exit the G0 phase under specific conditions - features shared with skeletal stem cells in mouse growth plates. Additionally, we identified distinct sub-populations of human resting zone chondrocytes; an exploration of their hierarchy determined that CHRDL2 and/or SFRP5-positive sub-populations were among the least quiescent resting zone cells. In summary, we generated a comprehensive map of gene expression within the human growth plate, revealing novel zone-specific markers, new primary growth disorders, candidate pharmacological targets, and sub-populations of resting zone chondrocytes with features of quiescent stem cells. These results contribute to a better understanding of the cellular and molecular mechanisms governing human height and can facilitate improved diagnosis and treatment strategies for patients with skeletal growth disorders.

Cite this article

Download citation ▾
Mahtab Avijgan, Ana R. López-Pérez, Leire Alonso Galicia, Jose G. Marchan-Alvarez, Laura Sudupe, Ruihan Zhou, Amal Nazaraliyev, Žaneta Andrusivová, Ludvig Larsson, Pâmella Miranda, Doste R. Mamand, Yunhan Zhao, Farasat Zaman, Hong Qian, Klas Blomgren, Felipe Prosper, Oscar P. B. Wiklander, Jesper N. Tegner, Joakim Lundeberg, Lars Sävendahl, Reza Mirzazadeh, David Gomez-Cabrero, Phillip T. Newton. Human growth plates house resting zone sub-populations with features of quiescent stem cells. Bone Research, 2026, 14 (1) : 79 DOI:10.1038/s41413-026-00564-y

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Kronenberg HM. Developmental regulation of the growth plate. Nature, 2003, 423: 332-336

[2]

Farquharson, C. Bone Growth. In Biology of Growth of Domestic Animals (ed. Scanes, C.) 170–185 (2003).

[3]

Haymond M, et al.. Early recognition of growth abnormalities permitting early intervention. Acta Paediatr., 2013, 102: 787-796

[4]

Wit JM, Joustra SD. Long-acting PEGylated growth hormone in children with idiopathic short stature: time to reconsider our diagnostic and treatment policy?. Eur. J. Endocrinol., 2023, 188: R1-R4

[5]

Benyi E, et al.. Efficacy and safety of percutaneous epiphysiodesis operation around the knee to reduce adult height in extremely tall adolescent girls and boys. Int. J. Pediatr. Endocrinol., 2010, 2010: 740629

[6]

Mirzazadeh R, et al.. Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples. Nat. Commun., 2023, 14 ArticleID: 509

[7]

Rossi A, et al.. Neural stem cells alter nucleocytoplasmic partitioning and accumulate nuclear polyadenylated transcripts during quiescence. bioRxiv, 2021

[8]

van Velthoven, C. T. J. & Rando, T. A. Stem cell quiescence: dynamism, restraint, and cellular idling. Cell Stem Cell24, 213–225 (2019).

[9]

de Morree, A. & Rando, T. A. Regulation of adult stem cell quiescence and its functions in the maintenance of tissue integrity. Nat. Rev. Molecular Cell Biol. 24, 334–354 (2023).

[10]

Kember NF. Cell division in endochondral ossification. J. Bone Jt. Surg. Br., 1960, 42-B: 824 LP-824839

[11]

Leeman DS, et al.. Lysosome activation clears aggregates and enhances quiescent neural stem cell activation during aging. Science, 2018, 359: 1277-1283

[12]

Settembre C, Perera RM. Lysosomes as coordinators of cellular catabolism, metabolic signalling and organ physiology. Nat. Rev. Mol. Cell Biol., 2024, 25: 223-245

[13]

Mizuhashi K, et al.. Resting zone of the growth plate houses a unique class of skeletal stem cells. Nature, 2018, 563: 254-258

[14]

Muruganandan S, et al.. A FoxA2+ long-term stem cell population is necessary for growth plate cartilage regeneration after injury. Nat. Commun., 2022, 13 ArticleID: 2515

[15]

Kember NF, Lambert BE. Slowly cycling cells in growing bone. Cell Prolif., 1981, 14: 327-330

[16]

Chagin AS, et al.. G-protein stimulatory subunit alpha and Gq/11α G-proteins are both required to maintain quiescent stem-like chondrocytes. Nat. Commun., 2014, 5: 1-14

[17]

Hallett SA, et al.. Chondrocytes in the resting zone of the growth plate are maintained in a Wnt-inhibitory environment. Elife, 2021, 10: e64513

[18]

Newton PT, et al.. A radical switch in clonality reveals a stem cell niche in the epiphyseal growth plate. Nature, 2019, 567: 234-238

[19]

Toba K, Winton EF, Koike T, Shibata A. Simultaneous three-color analysis of the surface phenotype and DNA-RNA quantitation using 7-amino-actinomycin D and pyronin Y. J. Immunol. Methods, 1995, 182: 193-207

[20]

Quarta M, et al.. An artificial niche preserves the quiescence of muscle stem cells and enhances their therapeutic efficacy. Nat. Biotechnol., 2016, 34: 752-759

[21]

Kobayashi H, et al.. Environmental optimization enables maintenance of quiescent hematopoietic stem cells ex vivo. Cell Rep., 2019, 28: 145-158.e9

[22]

Csaszar E, et al.. Rapid expansion of human hematopoietic stem cells by automated control of inhibitory feedback signaling. Cell Stem Cell, 2012, 10: 218-229

[23]

Lun ATL, Marioni JC. Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data. Biostatistics., 2017, 18: 451-464

[24]

Squair JW, et al.. Confronting false discoveries in single-cell differential expression. Nat. Commun., 2021, 12 ArticleID: 5692

[25]

Tagariello A, et al.. Ucma - a novel secreted factor represents a highly specific marker for distal chondrocytes. Matrix Biol., 2008, 27: 3-11

[26]

Miao D, Scutt A. Histochemical localization of alkaline phosphatase activity in decalcified bone and cartilage. J. Histochem. Cytochem., 2002, 50: 333-340

[27]

Chen J, et al.. Hypertrophic chondrocyte-specific Col10a1 controlling elements in Cre recombinase transgenic studies. Am. J. Transl. Res., 2019, 11: 6672-6679

[28]

Iruela-Arispe ML, Liska DAJ, Sage EH, Bornstein P. Differential expression of thrombospondin 1, 2, and 3 during murine development. Dev. Dynamics, 1993, 197: 40-56

[29]

Polański K, et al.. Bin2cell reconstructs cells from high resolution Visium HD data. Bioinformatics, 2024, 40: btae546

[30]

Hellemans J, et al.. Homozygous inactivating mutations in the NKX3-2 gene result in spondylo-megaepiphyseal-metaphyseal dysplasia. Am. J. Hum. Genet., 2009, 85: 916-922

[31]

Simsek-Kiper PO, et al.. A novel NKX3-2 mutation associated with perinatal lethal phenotype of spondylo-megaepiphyseal-metaphyseal dysplasia in a neonate. Eur. J. Med. Genet., 2019, 62: 21-26

[32]

Tribioli C, Frasch M, Lufkin T. Bapxl: an evolutionary conserved homologue of the Drosophila bagpipe homeobox gene is expressed in splanchnic mesoderm and the embryonic skeleton. Mech. Dev., 1997, 65: 145-162

[33]

Provot S, et al.. Nkx3.2/Bapx1 acts as a negative regulator of chondrocyte maturation. Development, 2006, 133: 651-662

[34]

Rainbow RS, Kwon H, Zeng L. The role of Nkx3.2 in chondrogenesis. Front. Biol., 2014, 9: 376-381

[35]

Farfel A, et al.. Effect of age and affection status on blood pressure, serum potassium and stature in familial hyperkalaemia and hypertension. Nephrol. Dialysis Transplant., 2011, 26: 1547-1553

[36]

Pekkinen M, et al.. Osteoporosis and skeletal dysplasia caused by pathogenic variants in SGMS2. JCI Insight, 2019, 4 ArticleID: e126180

[37]

Anderson HC. Vesicles associated with calcification in the matrix of epiphyseal cartilage. J. Cell Biol., 1969, 41: 59-72

[38]

Bonucci E. Fine structure of early cartilage calcification. J. Ultrastruct. Res., 1967, 20: 33-50

[39]

Watkins EL, Stillo JV, Wuthier RE. Subcellular fractionation of epiphyseal cartillage isolation of matrix vesicles and profiles of enzymes, phospholipids, calcium and phosphate. Biochim. Biophys. Acta (BBA) Gen. Subj., 1980, 631: 289-304

[40]

Cui L, Houston DA, Farquharson C, MacRae VE. Characterisation of matrix vesicles in skeletal and soft tissue mineralisation. Bone, 2016, 87: 147-158

[41]

Veerman RE, et al.. Molecular evaluation of five different isolation methods for extracellular vesicles reveals different clinical applicability and subcellular origin. J. Extracell. Vesicles, 2021, 10: e12128

[42]

Théry C, et al.. Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. J. Extracell. Vesicles, 2018, 7: 1535750

[43]

Kodama J, et al.. Apolipoprotein E is a marker of all chondrocytes in the growth plate resting zone. Bone Res., 2025, 13: 31

[44]

10x Genomics. Visium Probe Sets Overview. https://www.10xgenomics.com/support/cytassist-spatial-gene-expression/documentation/steps/probe-sets/visium-ffpe-probe-sets-overview (2025).

[45]

Stump CW. The histogenesis of bone. J. Anat., 1925, 59: 136-154

[46]

Avijgan M, Nazaraliyev A, Blomgren K, Gomez-Cabrero D, Newton PT. "Quiescence” in the resting zone of the growth plate: a systematic review. Stem Cells, 2026, 44: sxag010

[47]

Cebrián-Silla A, et al.. Unique organization of the nuclear envelope in the post-natal quiescent neural stem cells. Stem Cell Reports, 2017, 9: 203-216

[48]

Rodgers JT, et al.. MTORC1 controls the adaptive transition of quiescent stem cells from G 0 to GAlert. Nature, 2014, 510: 393-396

[49]

Hallett, S. A., Ono, W. & Ono, N. Growth plate chondrocytes: skeletal development, growth and beyond. Int. J. Mol. Sci. 20, 6009 (2019).

[50]

Oichi T, et al.. Nutrient-regulated dynamics of chondroprogenitors in the postnatal murine growth plate. Bone Res., 2023, 11: 20

[51]

Xie M, et al.. Secondary ossification center induces and protects growth plate structure. Elife, 2020, 9: e55212

[52]

Kember NF, Sissons HA. Quantitative histology of the human growth plate. J. Bone Joint Surg., 1976, 58-B: 426-435

[53]

Cheng L, Hill AF. Therapeutically harnessing extracellular vesicles. Nat. Rev. Drug Discov., 2022, 21: 379-399

[54]

Kindblom J, Nilsson O, Hurme T, Ohlsson C, Savendahl L. Expression and localization of Indian hedgehog (Ihh) and parathyroid hormone related protein (PTHrP) in the human growth plate during pubertal development. J. Endocrinol., 2002, 174: R1-R6

[55]

Chu NTL, et al.. Growth hormone regulates the stem cell population in the growth plate. Proc. Natl. Acad. Sci., 2025, 122 ArticleID: e2512316122

[56]

Percie du Sert N, et al.. The ARRIVE guidelines 2.0: updated guidelines for reporting animal research. PLoS Biol., 2020, 18: e3000410

Funding

Vetenskapsrådet (Swedish Research Council)(2019-01919)

Novo Nordisk Fonden (Novo Nordisk Foundation)(0067241)

Stiftelsen Syskonen Svenssons Stiftelse för Medicinsk Forskning(-)

Karolinska Institutet (Karolinska Institute)(-)

Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III)

EC | European Regional Development Fund (Europski Fond za Regionalni Razvoj)(PI20/01308, PI23/00516)

Cancer Research UK (CRUK)(C355/A26819)

King Abdullah University of Science and Technology (KAUST)(BAS/1/1078-01-01)

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council)(101021019)

Stiftelsen för Strategisk Forskning (Swedish Foundation for Strategic Research)(SB16-0014)

Science for Life Laboratory (SciLifeLab)

RIGHTS & PERMISSIONS

The Author(s)

PDF

5

Accesses

0

Citation

Detail

Sections
Recommended

/