Beyond Oil: Molecular Breeding for Multifunctional Innovation in Oilseed Brassica

Yingying Zhou , Iram Batool , Kangni Zhang , Ling Xu , Qian Huang , Fakhir Hannan , Yongqi Sun , Tongjun Qin , Wan Xu , Wu Qian , Ahsan Ayyaz , Weijun Zhou

Biobreeding ›› 2026, Vol. 1 ›› Issue (2) : 10008

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Biobreeding ›› 2026, Vol. 1 ›› Issue (2) :10008 DOI: 10.70322/biobreeding.2026.10008
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Beyond Oil: Molecular Breeding for Multifunctional Innovation in Oilseed Brassica
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Abstract

Brassica napus L., one of the world’s most significant oilseeds, is experiencing a paradigm shift from a single-minded focus on edible oil production to a multifactorial approach centered on sustainable agriculture. This review synthesizes the progress in molecular breeding, which has enabled the development of multifunctional B. napus ideotypes. We discuss the genomic plasticity of the crop, based on the genomic mosaicism and allopolyploid origin, which provides a genetic reservoir basis of diversification. Contemporary approaches such as genomic selection, marker-assisted pyramiding, and multi-omics integration are considered in terms of their ability to maximize the properties of multifaceted trait networks, breaking historical trade-offs (e.g., yield vs. quality), and providing new value-added functions. Their success is evidenced by examples, including the development of ultra-high-oil cultivars and multi-colored ornamental varieties. We also describe emerging directions, such as engineering the root architecture of dual-purpose fodder and optimizing seed oil composition with single-cell omics. These molecular tools, combined with precision agriculture technologies, enable the realization of an integrated Agriculture-Processing-Tourism framework. B. napus can move beyond being a commodity and become a personalized crop, capable of fulfilling all three functions in bringing nutritional security, bio-economic diversification, and ecological resilience, and thus, the philosophy of the Grand Food Concept.

Keywords

Brassica napus / Molecular breeding / Multifunctional crop / Genomic selection / Sustainable agriculture

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Yingying Zhou, Iram Batool, Kangni Zhang, Ling Xu, Qian Huang, Fakhir Hannan, Yongqi Sun, Tongjun Qin, Wan Xu, Wu Qian, Ahsan Ayyaz, Weijun Zhou. Beyond Oil: Molecular Breeding for Multifunctional Innovation in Oilseed Brassica. Biobreeding, 2026, 1 (2) : 10008 DOI:10.70322/biobreeding.2026.10008

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Statement of the Use of Generative AI and AI-Assisted Technologies in the Writing Process

During the preparation of this manuscript, the author(s) used Google Gemini AI tools to produce conceptual illustrative elements and icons only. After using this tool/service, the author(s) reviewed and edited the content as needed and take(s) full responsibility for the content of the article.

Author Contributions

Y.Z.: Writing—Original draft preparation, Formal analysis, Visualization. I.B. and A.A.: Methodology, Validation, Formal analysis, Investigation, Data Curation, Writing—original draft; K.Z., F.H., Y.S. and T.Q.: Validation, Investigation, Data Curation; Q.H., L.X., W.X. and W.Q.: Investigation, Validation; W.Z.: Conceptualization, Methodology, Resources, Writing—review & editing, Supervision, Project administration, funding acquisition. All authors agreed with the publication of the manuscript.

Ethics Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

All data presented in this study is available in the article and supplementary materials.

Funding

This study was funded by Science and Technology Department of Zhejiang Province (grant number 2023C02002-3), Agriculture and Rural Affairs Department of Zhejiang Province (grant number 2023ZDXT01), and Collaborative Innovation Center for Modern Crop Production co-sponsored by Province and Ministry (CIC-MCP).

Declaration of Competing Interest

Author Wu Qian is employed by Wenzhou Jiayou Seed Industry Co., Ltd., Wenzhou 325014, China. The authors declare that this company was not involved in the literature search strategy, data interpretation, manuscript writing, or the decision to publish. The commercial affiliation did not influence the review’s conclusions or the presentation of information.

References

[1]

Attia Z, Pogoda CS, Reinert S, Kane NC, Hulke BS. Breeding for sustainable oilseed crop yield and quality in a changing climate. Theor. Appl. Genet. 2021, 134, 1817-1827. DOI: 10.1007/s00122—021—03770—w

[2]

Grygier A. Mustard seeds as a bioactive component of food. Food Rev. Int. 2023, 39, 4088-4101. DOI: 10.1080/87559129.2021.2015774

[3]

Hajinajaf N, Bakhsh AF, Shahsavar SK, Sanjarian F, Rahnama H. Boosting plant oil yields: The role of genetic engineering in industrial applications. Biofuel Res. J. 2024, 11, 2105-2145. DOI: 10.18331/BRJ2024.11.2.5

[4]

Kumar V, Kaushik D, Kaur J, Rasane P, Sayyad A, Oz F, et al. Significance of Brassica crops in oilseed industry, crop improvement strategies in Brassica species . Appl. Sci. 2026, 1, 37-57. DOI: 10.1007/978—981—95—3861—4_2

[5]

Gołębiewska K, Fraś A, Gołębiewski D. Rapeseed meal as a feed component in monogastric animal nutrition—A review. Ann. Anim. Sci. 2022, 22, 1163-1183. DOI: 10.2478/aoas—2022—0020

[6]

Bansal A, Abrol DP. Diversity and abundance of insect pollinators affecting seed production in mustard (Brassica napus L.) . J. Apic. 2023, 38, 315-323. DOI: 10.17519/apiculture.2023.11.38.4.315

[7]

Rijal R, Sharm AK, Kumar A. Economic importance of Brassica crops . In Crop Improvement Strategies in Brassica Species: Applied Science; Springer: Berlin/Heidelberg, Germany, 2026; Volume 1, pp. 1-36.

[8]

Sharma S, Bala M, Kaur G, Tayyab S, Feroz SR. Chemical composition of oil and cake of Brassica juncea: Implications on human and animal health . In The Brassica juncea Genome; Springer: Berlin/Heidelberg, Germany, 2022; pp. 29-55.

[9]

Batool M, El—Badri AM, Hassan MU, Yang H, Wang C, Yan Z, et al. Drought stress in Brassica napus: Effects, tolerance mechanisms, and management strategies . J. Plant Growth Regul. 2023, 42, 21-45. DOI: 10.1007/s00344—021—10542—9

[10]

Zhang D, Lu Y, Ma W, Zhao J. The epigenetic regulation of agronomic traits and environmental adaptability in Brassicas . Plant Cell Environ. 2025, 48, 8915-8927. DOI: 10.1111/pce.70177

[11]

Tan Z, Han X, Dai C, Lu S, He H, Yao X, et al. Functional genomics of Brassica napus: Progress, challenges, and perspectives . J. Integr. Plant Biol. 2024, 66, 484-509. DOI: 10.1111/jipb.13635

[12]

Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, et al. Early allopolyploid evolution in the post—Neolithic Brassica napus oilseed genome . Science 2014, 345, 950-953. DOI: 10.1126/science.1253435

[13]

Zhang K, Mason AS, Farooq MA, Islam F, Quezada—Martinez D, Hu D, et al. Challenges and prospects for a potential allohexaploid Brassica crop . Theor. Appl. Genet. 2021, 134, 2711-2726. DOI: 10.1007/s00122—021—03845—8

[14]

Wang T, Dijk AD, Bucher J, Liang J, Wu J, Bonnema G, et al. Interploidy introgression shaped adaptation during the origin and domestication history of Brassica napus . Mol. Biol. Evol. 2023, 40, 199. DOI: 10.1093/molbev/msad199

[15]

Zhou J, Ma M, Zhang Q, Ni S, Zhao H, Wen J, et al. Genomic and epigenomic coordination maintains subgenome transcriptional balance in allotetraploid Brassica napus . Hortic. Res. 2025, 13, 266. DOI: 10.1093/hr/uhaf266

[16]

Tong C, Kole C, Liu L, Cheng X, Huang J, Liu S. The asymmetrical evolution of the mesopolyploid Brassica oleracea genome . In The Brassica oleracea Genome; Springer: Berlin/Heidelberg, Germany, 2021.

[17]

El—Esawi MA. Genetic diversity and evolution of Brassica genetic resources: From morphology to novel genomic technologies—A review . Plant Genet. Resour. 2017, 15, 388-399. DOI: 10.1017/S1479262116000058

[18]

Admas T, Jiao S, Pan R, Zhang W. Pan—omics insights into abiotic stress responses: Bridging functional genomics and precision crop breeding. Funct. Integr. Genomics 2025, 25, 128. DOI: 10.1007/s10142—025—01633—x

[19]

Qian X, Zheng W, Hu J, Ma J, Sun M, Li Y, et al. Identification and expression analysis of DFR gene family in Brassica napus L. Plants 2023, 12, 2583. DOI: 10.3390/plants12132583

[20]

Liang K. Genetic regulation of pigmentation in Brassica napus flowers . Comput. Mol. Biol. 2025, 15, 65-74. DOI: 10.5376/cmb.2025.15.0006

[21]

Vu TT, Jeong CY, Nguyen HN, Lee D, Lee SA, Kim JH, et al. Characterization of Brassica napus flavonol synthase involved in flavonol biosynthesis in Brassica napus L. J. Agric. Food Chem. 2015, 63, 7819-7829. DOI: 10.1021/acs.jafc.5b02994

[22]

Zhang B, Liu C, Wang Y, Yao X, Wang F, Wu J, et al. Disruption of a CAROTENOID CLEAVAGE DIOXYGENASE 4 gene converts flower colour from white to yellow in Brassica species . New Phytol. 2015, 206, 1513-1526. DOI: 10.1111/nph.13335

[23]

Ye S, Hua S, Ma T, Ma X, Chen Y, Wu L, et al. Genetic and multi—omics analyses reveal BnaA07.PAP2 as the key gene conferring anthocyanin—based color in Brassica napus flowers . J. Exp. Bot. 2022, 73, 6630-6645. DOI: 10.1093/jxb/erac312

[24]

Zhao C, Safdar LB, Xie M, Shi M, Dong Z, Yang L, et al. Mutation of the PHYTOENE DESATURASE 3 gene causes yellowish—white petals in Brassica napus . Crop J. 2021, 9, 1124-1134. DOI: 10.1016/j.cj.2020.10.012

[25]

Liu Y, Ye S, Yuan G, Ma X, Heng S, Yi B, et al. Gene silencing of BnaA09.ZEP and BnaC09.ZEP confers orange color in Brassica napus flowers . Plant J. 2020, 104, 932-949. DOI: 10.1111/tpj.14970

[26]

Lian J, Lu X, Yin N, Ma L, Lu J, Liu X, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus . Plant Sci. 2017, 254, 32-47. DOI: 10.1016/j.plantsci.2016.10.012

[27]

Xie T, Chen X, Guo T, Rong H, Chen Z, Sun Q, et al. Targeted knockout of BnTT2 homologues for yellow—seeded Brassica napus with reduced flavonoids and improved fatty acid composition . J. Agric. Food Chem. 2020, 68, 5676-5690. DOI: 10.1021/acs.jafc.0c01126

[28]

Zhai Y, Yu K, Cai S, Hu L, Amoo O, Xu L, et al. Targeted mutagenesis of BnTT8 homologs controls yellow seed coat development for effective oil production in Brassica napus L. Plant Biotechnol. J. 2020, 18, 1153-1168. DOI: 10.1111/pbi.13281

[29]

Calderwood A, Lloyd A, Hepworth J, Tudor EH, Jones DM, Woodhouse S, et al. Total FLC transcript dynamics from divergent paralogue expression explains flowering diversity in Brassica napus . New Phytol. 2021, 229, 3534-3548. DOI: 10.1111/nph.17131

[30]

Jiang L, Li D, Jin L, Ruan Y, Shen WH, Liu C. Histone lysine methyltransferases BnaSDG8.A and BnaSDG8.C are involved in the floral transition in Brassica napus . Plant J. 2018, 95, 672-685. DOI: 10.1111/tpj.13978

[31]

Yi L, Chen C, Yin S, Li H, Li Z, Wang B, et al. Sequence variation and functional analysis of a FRIGIDA orthologue (BnaA3.FRI) in Brassica napus . BMC Plant Biol. 2018, 18, 32. DOI: 10.1186/s12870—018—1253—1

[32]

Khan MH, Hu L, Zhu M, Zhai Y, Khan SU, Ahmar S, et al. Targeted mutagenesis of EOD3 gene in Brassica napus L. regulates seed production . J. Cell Physiol. 2021, 236, 1996-2007. DOI: 10.1002/jcp.29986

[33]

Liu J, Hua W, Hu Z, Yang H, Zhang L, Li R, et al. Natural variation in ARF18 gene simultaneously affects seed weight and silique length in polyploid rapeseed . Proc. Natl. Acad. Sci. USA 2015, 112, 5123-5132. DOI: 10.1073/pnas.1502160112

[34]

Wang JL, Tang MQ, Chen S, Zheng XF, Mo HX, Li SJ, et al. Down—regulation of BnDA1, whose gene locus is associated with the seeds weight, improves the seeds weight and organ size in Brassica napus . Plant Biotechnol. J. 2017, 15, 1024-1033. DOI: 10.1111/pbi.12696

[35]

Yang Y, Zhu K, Li H, Han S, Meng Q, Khan SU, et al. Precise editing of CLAVATA genes in Brassica napus L. regulates multilocular silique development. Plant Biotechnol. J. 2018, 16, 1322-1335. DOI: 10.1111/pbi.12872

[36]

Liu J, Zhou R, Wang W, Wang H, Qiu Y, Raman R, et al. A Copia—like retrotransposon insertion in the upstream region of the SHATTERPROOF1 gene, BnSHP1.A9, is associated with quantitative variation in pod shattering resistance in oilseed rape . J. Exp. Bot. 2020, 71, 5402-5413. DOI: 10.1093/jxb/eraa281

[37]

Zaman QU, Chu W, Shi Y, Hao M, Mei D, Jacqueline B, et al. Characterization of SHATTERPROOF homoeologs and CRISPR—Cas9—mediated genome editing enhances pod—shattering resistance in Brassica napus L. CRISPR J. 2021, 4, 360-370. DOI: 10.1089/crispr.2020.0129

[38]

Zhai Y, Cai S, Hu L, Yang Y, Amoo O, Fan C, et al. CRISPR/Cas9—mediated genome editing reveals differences in the contribution of INDEHISCENT homologues to pod shatter resistance in Brassica napus L. Theor. Appl. Genet. 2019, 132, 2111-2123. DOI: 10.1007/s00122—019—03341—0

[39]

Braatz J, Harloff HJ, Mascher M, Stein N, Himmelbach A, Jung C. CRISPR—Cas9 targeted mutagenesis leads to simultaneous modification of different homoeologous gene copies in polyploid oilseed rape (Brassica napus) . Plant Physiol. 2017, 174, 935-942. DOI: 10.1104/pp.17.00426

[40]

Zaman QU, Chu W, Hao M, Shi Y, Sun M, Sang SF, et al. CRISPR/Cas9—mediated multiplex genome editing of JAGGED gene in Brassica napus L. Biomolecules 2019, 9, 725. DOI: 10.3390/biom9110725

[41]

Zhang K, He J, Yin Y, Chen K, Deng X, Yu P, et al. Lysophosphatidic acid acyltransferase 2 and 5 commonly, but differently, promote seed oil accumulation in Brassica napus . Biotechnol. Biofuels Bioprod. 2022, 15, 83. DOI: 10.1186/s13068—022—02182—2

[42]

Shi J, Lang C, Wang F, Wu X, Liu R, Zheng T, et al. Depressed expression of FAE1 and FAD2 genes modifies fatty acid profiles and storage compounds accumulation in Brassica napus seeds . Plant Sci. 2017, 263, 177-182. DOI: 10.1016/j.plantsci.2017.07.014

[43]

Taylor DC, Zhang Y, Kumar A, Francis T, Giblin EM, Barton DL, et al. Molecular modification of triacylglycerol accumulation by over—expression of DGAT1 to produce canola with increased seed oil content under field conditions . Botany 2009, 87, 533-543. DOI: 10.1139/B08—101

[44]

Chen X, Truksa M, Snyder CL, El—Mezawy A, Shah S, Weselake RJ. Three homologous genes encoding sn—glycerol—3—phosphate acyltransferase 4 exhibit different expression patterns and functional divergence in Brassica napus . Plant Physiol. 2011, 155, 851-865. DOI: 10.1104/pp.110.169482

[45]

Haelterman L, Louvieaux J, Chiodi C, Bouchet AS, Kupcsik L, Stahl A, et al. Genetic control of root morphology in response to nitrogen across rapeseed diversity. Physiol. Plant 2024, 176, 14315. DOI: 10.1111/ppl.14315

[46]

Ahmad N, Ibrahim S, Tian Z, Kuang L, Wang X, Wang H, et al. Quantitative trait loci mapping reveals important genomic regions controlling root architecture and shoot biomass under nitrogen, phosphorus, and potassium stress in rapeseed (Brassica napus L.) . Front. Plant Sci. 2022, 13, 994666. DOI: 10.3389/fpls.2022.994666

[47]

Feng Y, Cui R, Wang S, He M, Hua Y, Shi L, et al. Transcription factor BnaA9.WRKY47 contributes to the adaptation of Brassica napus to low boron stress by up—regulating the boric acid channel gene BnaA3.NIP5;1 . Plant Biotechnol. J. 2020, 18, 1241-1254. DOI: 10.1111/pbi.13288

[48]

Zhang Q, Chen H, He M, Zhao Z, Cai H, Ding G, et al. The boron transporter BnaC4.BOR1;1c is critical for inflorescence development and fertility under boron limitation in Brassica napus . Plant Cell Environ. 2017, 40, 1819-1833. DOI: 10.1111/pce.12987

[49]

Sun Q, Lin L, Liu D, Wu D, Fang Y, Wu J, et al. CRISPR/Cas9—mediated multiplex genome editing of the BnWRKY11 and BnWRKY70 genes in Brassica napus L. Int. J. Mol. Sci. 2018, 19, 2716. DOI: 10.3390/ijms19092716

[50]

Kagale S, Divi UK, Krochko JE, Keller WA, Krishna P. Brassinosteroid confers tolerance in Arabidopsis thaliana and Brassica napus to a range of abiotic stresses . Planta 2007, 225, 353-364. DOI: 10.1007/s00425—006—0361—6

[51]

Xu P, Cai W. Functional characterization of the BnNCED3 gene in Brassica napus . Plant Sci. 2017, 256, 16-24. DOI: 10.1016/j.plantsci.2016.11.012

[52]

Wang Z, Mao H, Dong C, Ji R, Cai L, Fu H, et al. Overexpression of Brassica napus MPK4 enhances resistance to Sclerotinia sclerotiorum in oilseed rape . Mol. Plant Microbe Interact. 2009, 22, 235-244. DOI: 10.1094/MPMI—22—3—0235

[53]

Wang Z, Fang H, Chen Y, Chen K, Li G, Gu S, et al. Overexpression of BnWRKY33 in oilseed rape enhances resistance to Sclerotinia sclerotiorum . Mol. Plant Pathol. 2014, 15, 677-689. DOI: 10.1111/mpp.12123

[54]

Potlakayala SD, DeLong C, Sharpe A, Fobert PR. Conservation of NON—EXPRESSOR OF PATHOGENESIS—RELATED GENES1 function between Arabidopsis thaliana and Brassica napus . Physiol. Mol. Plant Pathol. 2007, 71, 174-183. DOI: 10.1016/j.pmpp.2008.01.003

[55]

Yan L, Zeng L, Raza A, Lv Y, Ding X, Cheng Y, et al. Inositol improves cold tolerance through inhibiting CBL1 and increasing Ca 2+ influx in rapeseed (Brassica napus L.) . Front. Plant Sci. 2022, 13, 775692. DOI: 10.3389/fpls.2022.775692

[56]

Liang Z, Li M, Liu Z, Wang J. Genome—wide identification and characterization of the Hsp70 gene family in allopolyploid rapeseed (Brassica napus L.) compared with its diploid progenitors . PeerJ 2019, 7, e7511. DOI: 10.7717/peerj.7511

[57]

Zhang T, Chang Y, Wang J, Wang N, Wang Y, Chen Q, et al. Cloning and expression analysis of a BnICE1 from Brassica napus L. Sci. Agric. Sin. 2013, 1, 205-214. 10.3864/j.issn.0578—1752.2013.01.024

[58]

Jhingan S, Harloff HJ, Abbadi A, Welsch C, Blümel M, Tasdemir D, et al. Reduced glucosinolate content in oilseed rape (Brassica napus L.) by random mutagenesis of BnMYB28 and BnCYP79F1 genes . Sci. Rep. 2023, 13, 2344. DOI: 10.1038/s41598—023—28661—6

[59]

Nour—Eldin HH, Madsen SR, Engelen S, Jørgensen ME, Olsen CE, Andersen JS, et al. Reduction of antinutritional glucosinolates in Brassica oilseeds by mutation of genes encoding transporters . Nat. Biotechnol. 2017, 35, 377-382. DOI: 10.1038/nbt.3823

[60]

Neal CS, Fredericks DP, Griffiths CA, Neale AD. The characterisation of AOP2: A gene associated with the biosynthesis of aliphatic alkenyl glucosinolates in Arabidopsis thaliana . BMC Plant Biol. 2010, 10, 170. DOI: 10.1186/1471—2229—10—170

[61]

Miquel M, Trigui G, d’Andréa S, Kelemen Z, Baud S, Berger A, et al. Specialization of oleosins in oil body dynamics during seed development in Arabidopsis seeds . Plant Physiol. 2014, 164, 1866-1878. DOI: 10.1104/pp.113.233262

[62]

Peng D, Zhou B, Jiang Y, Tan X, Yuan D, Zhang L. Enhancing freezing tolerance of Brassica napus L. by overexpression of a stearoyl—acyl carrier protein desaturase gene (SAD) from Sapium sebiferum (L.) Roxb. Plant Sci. 2018, 272, 32-41. DOI: 10.1016/j.plantsci.2018.03.028

[63]

Huang KL, Li Y, Wang H, Tian J, Fu YF, Zheng Y, et al. Phosphorylation of BnLEC1 by BnSnRK2;2 is crucial for modulating lipid synthesis in seeds of Brassica napus . Seed Biol. 2024, 3, e009. DOI: 10.48130/seedbio—0024—0009

[64]

Zeng DZ, Tian LS, Guo SX, Cai YF, Yang JP, Deng W, et al. Cloning and analysis of the phytoene synthase (BnPSY) gene in Brassica napus L. In Proceedings of the 13th International Rapeseed Congress, Prague, Czech Republic, 5—9 June 2011; pp. 928-932.

[65]

Jiang J, Tian L, Guo S, Yu Q, Zeng D, Niu Y. Molecular cloning of BnZEP and its expression in petals of different colors in Brassica napus L. Turk. J. Agric. For. 2015, 39, 377-386. DOI: 10.3906/tar—1403—17

[66]

Endrigkeit J. Identifikation und Charakterisierung von Genen der Tocopherol—Biosynthese aus Raps (Brassica napus L.) . Ph.D. Dissertation, Christian—Albrechts—Universität zu Kiel, Kiel, Germany, 2008.

[67]

Chikkaputtaiah C, Debbarma J, Baruah I, Havlickova L, Boruah HPD, Curn V. Molecular genetics and functional genomics of abiotic stress—responsive genes in oilseed rape (Brassica napus L.): A review of recent advances and future . Plant Biotechnol. Rep. 2017, 11, 365-384. DOI: 10.1007/s11816—017—0458—3

[68]

Hu D, Jing J, Snowdon RJ, Mason AS, Shen J, Meng J, et al. Exploring the gene pool of Brassica napus by genomics—based approaches . Plant Biotechnol. J. 2021, 19, 1693-1712. DOI: 10.1111/pbi.13636

[69]

Yu J, Hu F, Dossa K, Wang Z, Ke T. Genome—wide analysis of UDP—glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization . BMC Genom. 2017, 18, 474. DOI: 10.1186/s12864—017—3844—x

[70]

Kesidis CE. The effect of formation pathway on allopolyploids between Brassica carinata, Brassica napus, Brassica juncea and Sinapis arvensis . Ph.D. Dissertation, Carleton University, Ottawa, Canada, 2019.

[71]

Quan C, Dou S, Dai C. The dynamics of ACR and DNA methylation impact asymmetric subgenome dominance in allotriploid Brassica species . bioRxiv 2025, 2025—02. DOI: 10.1101/2025.02.16.638486

[72]

Fikere M, Barbulescu DM, Malmberg MM, Shi F, Koh JC, Slater AT, et al. Genomic prediction using prior quantitative trait loci information reveals a large reservoir of underutilised blackleg resistance in diverse canola (Brassica napus L.) lines . Plant Genome 2018, 11, 170100. DOI: 10.3835/plantgenome2017.11.0100

[73]

Afzal M, Alghamdi SS, Rahman MH, Ahmad A, Farooq T, Alam M, et al. Current status and future possibilities of molecular genetics techniques in Brassica napus . Biotechnol. Lett. 2018, 40, 479-492. DOI: 10.1007/s10529—018—2510—y

[74]

Edukondalu B, Aswini N, Amaresh, Krishnappa G, Soundharya B, Nikhitha G, et al. Accelerating genetic gain through integrated genomic selection in crop plants. J. Appl. Genet. 2026, 67, 249-269. DOI: 10.1007/s13353—025—01034—7

[75]

Gu J, Guan Z, Jiao Y, Liu K, Hong D. The story of a decade: Genomics, functional genomics, and molecular breeding in Brassica napus . Plant Commun. 2024, 5, 100884. DOI: 10.1016/j.xplc.2024.100884

[76]

Cobb JN, Biswas PS, Platten JD. Back to the future: Revisiting MAS as a tool for modern plant breeding. Theor. Appl. Genet. 2019, 132, 647-667. DOI: 10.1007/s00122—018—3266—4

[77]

Shi J, Ni X, Huang J, Fu Y, Wang T, Yu H, et al. CRISPR/Cas9—mediated gene editing of BnFAD2 and BnFAE1 modifies fatty acid profiles in Brassica napus . Genes 2022, 13, 1681. DOI: 10.3390/genes13101681

[78]

Calderwood A, Siles L, Eastmond PJ, Kurup S, Morris RJ. A causal inference and Bayesian optimisation framework for modelling multi—trait relationships—Proof—of—concept using Brassica napus seed yield under controlled conditions . PLoS ONE 2023, 18, e0290429. DOI: 10.3390/genes13101681

[79]

Anas M, Basri S, Chaurasiya N, Ali M. Artificial intelligence—assisted omics techniques in plant defense: Recent advancements and future prospects. In AI—Enhanced Plant Omics; CABI: Wallingford, UK, 2026; p. 143.

[80]

Ijaz S, Iqbal J, Abbasi BA, Yaseen T, Rehman S, Kazi M, et al. Role of OMICS—based technologies in plant sciences. In OMICs—Based Techniques for Global Food Security ; Wiley: Hoboken, NJ, USA, 2024; pp. 45-66.

[81]

Liu H, Zhao W, Hua W, Liu J. A large—scale population based organelle pan—genomes construction and phylogeny analysis reveal the genetic diversity and the evolutionary origins of chloroplast and mitochondrion in Brassica napus L. BMC Genom. 2022, 23, 339. DOI: 10.1186/s12864—022—08573—x

[82]

Farooq MA, Hong Z, Islam F, Noor Y, Hannan F, Zhang Y, et al. Comprehensive proteomic analysis of arsenic induced toxicity reveals the mechanism of multilevel coordination of efficient defense and energy metabolism in two Brassica napus cultivars . Ecotoxicol. Environ. Saf. 2021, 208, 111744. DOI: 10.1016/j.ecoenv.2020.111744

[83]

Li H, Che R, Zhu J, Yang X, Li J, Fernie AR, et al. Multi—omics—driven advances in the understanding of triacylglycerol biosynthesis in oil seeds. Plant J. 2024, 117, 999-1017. DOI: 10.1111/tpj.16545

[84]

Zhang WJ, Tang LP, Peng J, Zhai LM, Ma QL, Zhang XS, et al. A WRI1—dependent module is essential for the accumulation of auxin and lipid in somatic embryogenesis of Arabidopsis thaliana . New Phytol. 2024, 242, 1098-1112. DOI: 10.1111/nph.19689

[85]

Liew LC, You Y, Auroux L, Oliva M, Peirats—Llobet M, Ng S, et al. Establishment of single—cell transcriptional states during seed germination. Nat. Plants 2024, 10, 1418-1434. DOI: 10.1038/s41477—024—01771—3

[86]

Lee TA, Illouz—Eliaz N, Nobori T, Xu J, Jow B, Nery JR, et al. A single—cell, spatial transcriptomic atlas of the Arabidopsis life cycle . Nat. Plants 2025, 11, 1960-1975. DOI: 10.1038/s41477—025—02072—z

[87]

Ma N, Yuan J, Li M, Li J, Zhang L, Liu L, et al. Ideotype population exploration: Growth, photosynthesis, and yield components at different planting densities in winter oilseed rape (Brassica napus L.) . PLoS ONE 2014, 9, e114232. DOI: 10.1371/journal.pone.0114232

[88]

Wu Y, Xie L. AI—driven multi—omics integration for multi—scale predictive modeling of genotype—environment—phenotype relationships. Comput. Struct. Biotechnol. J. 2025, 27, 265-277. DOI: 10.1016/j.csbj.2024.12.030

[89]

Norouzi MA, Ahangar L, Payghamzadeh K, Sabouri H, Sajadi SJ. Investigation of genetic diversity of different spring rapeseed (Brassica napus L.) genotypes and yield prediction using machine learning models . Genet. Resour. Crop Evol. 2024, 71, 4519-4532. DOI: 10.1007/s10722—024—01915—6

[90]

Sharma SS, Pandey A, Kashyap A, Goyal L, Garg P, Kushwaha R, et al. CRISPR/Cas9: Efficient and emerging scope for Brassica crop improvement . Planta 2025, 262, 14. DOI: 10.1007/s00425—025—04727—9

[91]

Chen YY, Lu HQ, Jiang KX, Wang YR, Wang YP, Jiang JJ. The flavonoid biosynthesis and regulation in Brassica napus: A review . Int. J. Mol. Sci. 2022, 24, 357. DOI: 10.3390/ijms24010357

[92]

Li F, Gong Y, Mason AS, Liu Q, Huang J, Ma M, et al. Research progress and applications of colorful Brassica crops . Planta 2023, 258, 45. DOI: 10.1007/s00425—023—04205—0

[93]

Zhang K, Yang S, Zou J, Huang Q, Chen S, Yan G, et al. Genome—wide association study reveals genomic regions impacting yield—related traits in allohexaploid Brassica with AABBCC genomes . Ann. Bot. 2025, mcaf309. DOI: 10.1093/aob/mcaf309

[94]

Hearn DJ, O’Brien P, Poulsen SM. Comparative transcriptomics reveals shared gene expression changes during independent evolutionary origins of stem and hypocotyl/root tubers in Brassica (Brassicaceae) . PLoS ONE 2018, 13, e0197166. DOI: 10.1371/journal.pone.0197166

[95]

Nuruzzaman M, Sato M, Okamoto S, Hoque M, Shea DJ, Fujimoto R, et al. Comparative transcriptome analysis during tuberous stem formation in kohlrabi (B. oleracea var. gongylodes) at early growth periods (seedling stages) . Physiol. Plant 2022, 174, e13770. DOI: 10.1111/ppl.13770

[96]

Liu M, Bassetti N, Petrasch S, Zhang N, Bucher J, Shen S, et al. What makes turnips: Anatomy, physiology and transcriptome during early stages of its hypocotyl—tuber development. Hortic. Res. 2019, 6, 38. DOI: 10.1038/s41438—019—0119—5

[97]

Yuan R, Zeng X, Zhao S, Wu G, Yan X. Identification of candidate genes related to stem development in Brassica napus using RNA—Seq . Plant Mol. Biol. Rep. 2019, 37, 347-364. DOI: 10.1007/s11105—019—01158—1

[98]

Yang R, Wang Q, Wang J, Wang X, Zhao J, Li N, et al. JmjC protein—mediated histone demethylation: Regulating growth, development, and stress adaptation in Brassica rapa . Horticulturae 2025, 11, 1424. DOI: 10.3390/horticulturae11121424

[99]

Chen G, Weil RR. Penetration of cover crop roots through compacted soils. Plant Soil. 2010, 331, 31-43. DOI: 10.1007/s11104—009—0223—7

[100]

Cresswell HP, Kirkegaard JA. Subsoil amelioration by plant—roots: The process and the evidence. Aust. J. Soil. Res. 1995, 33, 221-239. DOI: 10.1071/SR9950221

[101]

Folorunso OA, Rolston DE, Prichard T, Loui DT. Soil surface strength and infiltration rate as affected by winter cover crops. Soil. Technol. 1992, 5, 189-197. DOI: 10.1016/0933—3630(92)90021—R

[102]

Abdollahi L, Munkholm LJ. Tillage system and cover crop effects on soil quality: I. Chemical, mechanical, and biological properties. Soil. Sci. Soc. Am. J. 2014, 78, 262-270. DOI: 10.2136/sssaj2013.07.0301

[103]

Blanco—Canqui H, Shaver TM, Lindquist JL, Shapiro CA, Elmore RW, Francis CA, et al. Cover crops and ecosystem services: Insights from studies in temperate soils. Agron. J. 2015, 107, 2449-2474. DOI: 10.2134/agronj15.0086

[104]

Quemada M, Baranski M, Nobel—de Lange MNJ, Vallejo A, Cooper JM. Meta—analysis of strategies to control nitrate leaching in irrigated agricultural systems and their effects on crop yield. Agric. Ecosyst. Environ. 2013, 174, 1-10. DOI: 10.1016/j.agee.2013.04.018

[105]

Tonitto C, David , Drinkwater LE. Replacing bare fallows with cover crops in fertilizer—intensive cropping systems: A meta—analysis of crop yield and N dynamics. Agric. Ecosyst. Environ. 2006, 112, 58-72. DOI: 10.1016/j.agee.2005.07.003

[106]

Kristensen HL, Thorup—Kristensen K. Root growth and nitrate uptake of three different catch crops in deep soil layers. Soil. Sci. Soc. Am. J. 2004, 68, 529-537. DOI: 10.2136/sssaj2004.5290

[107]

Dabney SM, Delgado JA, Reeves DW. Using winter cover crops to improve soil and water quality. Commun. Soil. Sci. Plant Anal. 2001, 32, 1221-1250. DOI: 10.1081/CSS—100104110

[108]

Rasse DP, Ritchie JT, Peterson WR, Wei J, Smucker AJ. Rye cover crop and nitrogen fertilization effects on nitrate leaching in inbred maize fields. Agron. J. 2000, 29, 298-304. DOI: 10.2134/jeq2000.00472425002900010037x

[109]

Villamil MB, Bollero GA, Darmody RG, Simmons FW, Bullock DG. No—till corn/soybean systems including winter cover crops: Effects on soil properties. Soil. Sci. Soc. Am. J. 2006, 70, 1936-1944. DOI: 10.2136/sssaj2005.0350

[110]

Town JR, Dumonceaux T, Tidemann B, Helgason BL. Crop rotation significantly influences the composition of soil, rhizosphere, and root microbiota in canola (Brassica napus L.) . Environ. Microbiome 2023, 18, 40. DOI: 10.1186/s40793—023—00495—9

[111]

Larkin RP, Lynch RP. Use and effects of different Brassica and other rotation crops on soilborne diseases and yield of potato . Horticulturae 2018, 4, 37. DOI: 10.3390/horticulturae4040037

[112]

Kramberger B, Gselman A, Kristl J, Lešnik M, Šuštar V, Muršec M, et al. Winter cover crop: The effects of grass—clover mixture proportion and biomass management on maize and the apparent residual N in the soil. Eur. J. Agron. 2014, 55, 63-71. DOI: 10.1016/j.eja.2014.01.001

[113]

Tosti G, Benincasa P, Farneselli M, Tei F, Guiducci M. Barley—hairy vetch mixture as cover crop for green manuring and the mitigation of N leaching risk. Eur. J. Agron. 2014, 54, 34-39. DOI: 10.1016/j.eja.2013.11.012

[114]

Angidi S, Madankar K, Tehseen MM, Bhatla A. Advanced high—throughput phenotyping techniques for managing abiotic stress in agricultural crops: A comprehensive review. Crops 2025, 5, 8. DOI: 10.3390/crops5020008

[115]

Meena V, Dotaniya ML, Meena MD, Jat RS, Meena MK, Choudhary RL, et al. Sensor based precise nitrogen application augmented productivity and profitability of mustard (Brassica juncea L.) . PLoS ONE 2024, 19, e0304206. DOI: 10.1371/journal.pone.0304206

[116]

Li J, Xie T, Chen Y, Zhang Y, Wang C, Jiang Z, et al. High—throughput unmanned aerial vehicle—based phenotyping provides insights into the dynamic process and genetic basis of rapeseed waterlogging response in the field. J. Exp. Bot. 2022, 73, 5264-5278. DOI: 10.1093/jxb/erac242

[117]

Shen Y, Zhou H, Yang X, Lu X, Guo Z, Jiang L, et al. Biomass phenotyping of oilseed rape through UAV multi—view oblique imaging with 3DGS and SAM model. Comput. Electron. Agric. 2025, 235, 110320. DOI: 10.1016/j.compag.2025.110320

[118]

Yu S, Du S, Yuan J, Hu Y. Fatty acid profile in the seeds and seed tissues of Paeonia L. species as new oil plant resources . Sci. Rep. 2016, 6, 26944. DOI: 10.1038/srep26944

[119]

Zhao Y, Ning P, Feng X, Ren H, Cui M, Yang L. Characterization of stem nodes associated with carbon partitioning in maize in response to nitrogen availability. Int. J. Mol. Sci. 2022, 23, 4389. DOI: 10.3390/ijms23084389

[120]

Nunes—Nesi A, Fernie AR, Stitt M. Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Mol. Plant 2010, 3, 973-996. DOI: 10.1093/mp/ssq049

[121]

Tang M, Guschina IA, O’Hara P, Slabas AR, Quant PA, Fawcett T, et al. Metabolic control analysis of developing oilseed rape (Brassica napus cv. Westar) embryos shows that lipid assembly exerts significant control over oil accumulation . New Phytol. 2012, 196, 414-426. DOI: 10.1111/j.1469—8137.2012.04262.x

[122]

Zhai J, Xue J, Zhang Y, Zhang G, Shen D, Wang Q, et al. Effect of nitrogen application rate on lodging resistance of spring maize stalks under integrated irrigation with water and fertilizer. J. Maize Sci. 2021, 29, 137-144. 10.13597/j.cnki.maize.science.20210518

[123]

Liu Q, Wu K, Harberd NP, Fu X. Green revolution DELLAs: From translational reinitiation to future sustainable agriculture. Mol. Plant 2021, 14, 547-549. DOI: 10.1016/j.molp.2021.03.015

[124]

Zhu J, Dai W, Chen B, Cai G, Wu X, Yan G. Research progress on the effect of nitrogen on rapeseed between seed yield and oil content and its regulation mechanism. Int. J. Mol. Sci. 2023, 24, 14504. DOI: 10.3390/ijms241914504

[125]

Wu W, Shah F, Duncan RW, Ma BL. Grain yield, root growth habit and lodging of eight oilseed rape genotypes in response to a short period of heat stress during flowering. Agric. For. Meteorol. 2020, 287, 107954. DOI: 10.1016/j.agrformet.2020.107954

[126]

Diepenbrock W. Yield analysis of winter oilseed rape (Brassica napus L.): A review . Field Crops Res. 2000, 67, 35-49. DOI: 10.1016/S0378—4290(00)00082—4

[127]

Slafer GA, Savin R, Sadras VO. Coarse and fine regulation of wheat yield components in response to genotype and environment. Field Crops Res. 2014, 157, 71-83. DOI: 10.1016/j.fcr.2013.12.004

[128]

Wang D, Jin S, Chen Z, Shan Y, Li L. Genome—wide identification of the pectin methylesterase inhibitor genes in Brassica napus and expression analysis of selected members . Front. Plant Sci. 2022, 13, 940284. DOI: 10.3389/fpls.2022.940284

[129]

Wang D, Lu Q, Jin S, Fan X, Ling H. Pectin, lignin and disease resistance in Brassica napus L.: An update . Horticulturae 2023, 9, 112. DOI: 10.3390/horticulturae9010112

[130]

Mupondwa E, Li X, Wanasundara JP. Technoeconomic prospects for commercialization of Brassica (cruciferous) plant proteins . J. Am. Oil Chem. Soc. 2018, 95, 903-922. DOI: 10.1002/aocs.12057

[131]

Suchocki T. Energy utilization of rapeseed biomass in Europe: A review of current and innovative applications. Energies 2024, 17, 6177. DOI: 10.3390/en17236177

[132]

Herath A, Ma BL, Shang J, Liu J, Dong T, Jiao X, et al. On—farm spatial characterization of soil mineral nitrogen, crop growth, and yield of canola as affected by different rates of nitrogen application. Can. J. Soil. Sci. 2017, 98, 1-14. DOI: 10.1139/CJSS—2017—0024

[133]

Klein AM, Vaissière BE, Cane JH, Steffan—Dewenter I, Cunningham SA, Kremen C, et al. Importance of pollinators in changing landscapes for world crops. Proc. R. Soc. B 2007, 274, 303-313. DOI: 10.1098/rspb.2006.3721

[134]

Halder S, Ghosh S, Khan R, Khan AA, Perween T, Hasan MA. Role of pollination in fruit crops: A review. Pharma Innov. J. 2019, 8, 695-702. Available online: https://www.researchgate.net/profile/Shuvadeep—Halder/publication/333532191_Role_of_pollination_in_fruit_crops_A_review/links/5cf23e8e92851c4dd01f855b/Role—of—pollination—in—fruit—crops—A—review.pdf (accessed on 28 January 2026).

[135]

Zandberg JD, Fernandez CT, Danilewicz MF, Thomas WJ, Edwards D, Batley J. The global assessment of oilseed Brassica crop species yield, yield stability and the underlying genetics . Plants 2022, 11, 2740. DOI: 10.3390/plants11202740

[136]

Zhang Y, Zhang H, Zhao H, Xia Y, Zheng X, Fan R, et al. Multi—omics analysis dissects the genetic architecture of seed coat content in Brassica napus . Genome Biol. 2022, 23, 86. DOI: 10.1186/s13059—022—02647—5

[137]

Zhao Q, Wang F, Xiong A, Li S, Wang Y, Lei X, et al. Regulation of fatty acid synthesis in oilseed crops: Multidimensional insights and strategies for enhancing oil quality. Crit. Rev. Biotechnol. 2025, 45, 1737-1753. DOI: 10.1080/07388551.2025.2529591

[138]

Bu M, Fan W, Li R, He B, Cui P. Lipid metabolism and improvement in oilseed crops: Recent advances in multi—omics studies. Metabolites 2023, 13, 1170. DOI: 10.3390/metabo13121170

[139]

Zhang C, Gong R, Zhong H, Dai C, Zhang R, Dong J, et al. Integrated multi—locus genome—wide association studies and transcriptome analysis for seed yield and yield—related traits in Brassica napus . Front. Plant Sci. 2023, 14, 1153000. DOI: 10.3389/fpls.2023.1153000

[140]

Raza A, Razzaq A, Mehmood SS, Hussain MA, Wei S, He H, et al. Omics: The way forward to enhance abiotic stress tolerance in Brassica napus L. GM Crops Food 2021, 12, 251-281. DOI: 10.1080/21645698.2020.1859898

[141]

Mahmood U, Li X, Fan Y, Chang W, Niu Y, Li J, et al. Multi—omics revolution to promote plant breeding efficiency. Front. Plant Sci. 2022, 13, 1062952. DOI: 10.3389/fpls.2022.1062952

[142]

Gao G, Zhang L, Tong P, Yan G, Wu X. Enhancing oil content in oilseed crops: Genetic insights, molecular mechanisms, and breeding approaches. Int. J. Mol. Sci. 2025, 26, 7390. DOI: 10.3390/ijms26157390

[143]

Yu W, Wang X, Wang H, Wang W, Cheng H, Mei D, et al. Optimization and application of genome prediction model in rapeseed: Flowering time, yield components, and oil content as examples. Hortic. Res. 2025, 12, uhaf115. DOI: 10.1093/hr/uhaf115

[144]

Yang Z, Wang S, Wei L, Huang Y, Liu D, Jia Y, et al. BnIR: A multi—omics database with various tools for Brassica napus research and breeding . Mol. Plant 2023, 16, 775-789. DOI: 10.1016/j.molp.2023.03.007

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