Denitrification processes, inhibitors, and their implications in ground improvement

Yasaman Abdolvand , Mohammadhossein Sadeghiamirshahidi , Ishi Keenum

Biogeotechnics ›› 2026, Vol. 4 ›› Issue (2) : 100176

PDF (4027KB)
Biogeotechnics ›› 2026, Vol. 4 ›› Issue (2) :100176 DOI: 10.1016/j.bgtech.2025.100176
Review Article
research-article
Denitrification processes, inhibitors, and their implications in ground improvement
Author information +
History +
PDF (4027KB)

Abstract

Ureolysis and denitrification are the two major microbial metabolic pathways commonly used in Microbially induced calcite precipitation (MICP) for geoengineering applications. Although ureolysis is generally the more efficient pathway, the denitrification pathway has gained more attention recently because a diverse group of bacteria can precipitate calcite via denitrification, and no harmful byproduct is generated provided that the reduction of nitrate to nitrogen gas is complete. There are, however, many environmental factors that could inhibit or reduce the efficiency of the denitrification process in soil. Some examples of these factors include salinity, pH, temperature, biodiversity (abundance and species of denitrifiers and competitors), water stress (extreme wet-dry conditions), degree of saturation (anaerobic vs. aerobic conditions), high heavy metal content (e.g., mine tailings), and shortage of dissolved carbon sources. In this paper, the denitrification process, the denitrification inhibitors, and the mechanisms involved in their inhibition of the denitrification process are discussed in detail. This investigation indicates that although general optimum conditions can be formulated for MICP through denitrification, significant adjustments may be necessary if inhibitory conditions are anticipated. It was also shown that when inhibitors are expected, it is crucial to investigate not only the amount of precipitated calcium carbonate but also the N2O/N2 gase ratio to ensure the complete reduction of nitrate to nitrogen gas and prevent the release of byproducts (especially N2O) into the environment. Finally, the implications of the inhibitory factors on the field application of denitrification MICP treatment for different geotechnical projects are discussed.

Keywords

Microbially induced calcite precipitation (MICP) / Biocementation / Denitrification / Environmental conditions / Inhibitors

Cite this article

Download citation ▾
Yasaman Abdolvand, Mohammadhossein Sadeghiamirshahidi, Ishi Keenum. Denitrification processes, inhibitors, and their implications in ground improvement. Biogeotechnics, 2026, 4(2): 100176 DOI:10.1016/j.bgtech.2025.100176

登录浏览全文

4963

注册一个新账户 忘记密码

CRediT authorship contribution statement

Yasaman Abdolvand: Writing - review & editing. Mohammadhossein Sadeghiamirshahidi: Writing - original draft, Investigation. Ishi Keenum: Writing - review & editing.

Declaration of Competing Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

References

[1]

Abbas, S., Javed, M. T., Shahid, M., Hussain, I., Haider, M. Z., Chaudhary, H. J., Tanwir, K., & Maqsood, A. (2020). Acinetobacter sp. SG-5 inoculation alleviates cadmium toxicity in differentially Cd tolerant maize cultivars as deciphered by improved physio-biochemical attributes, antioxidants and nutrient physiology. Plant Physiology and Biochemistry, 155, 815-827. https://doi.org/10.1016/J.PLAPHY.2020.08.024

[2]

Abdolvand, Y., & Sadeghiamirshahidi, M. (2024). Soil stabilization with gypsum: A review. Journal of Rock Mechanics and Geotechnical Engineering. https://doi.org/10.1016/J.JRMGE.2024.02.007

[3]

Aerts, R. (1997). Atmospheric nitrogen deposition affects potential denitrification and N2O emission from peat soils in the Netherlands. Soil Biology and Biochemistry, 29(7), 1153-1156. https://doi.org/10.1016/S0038-0717(96)00308-2

[4]

Ahmadzadeh, E., Samadianfard, S., Xiao, Y., & Toufigh, V. (2024). Feasibility of microorganisms in soil bioremediation and dust control. Biogeotechnics, 2(3), https://doi.org/10.1016/j.bgtech.2024.100085

[5]

Akiyama, M., & Kawasaki, S. (2012). Novel grout material comprised of calcium phosphate compounds: In vitro evaluation of crystal precipitation and strength reinforcement. Engineering Geology, 125, 119-128. https://doi.org/10.1016/j.enggeo.2011.11.011

[6]

Al-Ani, M. A. M., Hmoshi, R. M., Kanaan, I. A., & Thanoon, A. A. (2019). Effect of pesticides on soil microorganisms. Journal of Physics: Conference Series, 1294(7), Article 072007. https://doi.org/10.1088/1742-6596/1294/7/072007

[7]

Ali, A., Wu, Z., Li, M., & Su, J. (2021). Carbon to nitrogen ratios influence the removal performance of calcium, fluoride, and nitrate by Acinetobacter H12 in a quartz sand-filled biofilm reactor. Bioresource Technology, 333. https://doi.org/10.1016/j.biortech.2021.125154

[8]

Almeida, J. S., Júlio, S. M., Reis, M. A. M., & Carrondo, M. J. T. (1995). Nitrite inhibition of denitrification by Pseudomonas fluorescens. Biotechnology and Bioengineering, 46(3), 194-201. https://doi.org/10.1002/BIT.260460303

[9]

Ambus, P., & Zechmeister-Boltenstern, S. (2007). Denitrification and N-cycling in forest ecosystems. Biology of the Nitrogen Cycle, 343-358. https://doi.org/10.1016/B978-044452857-5.50023-0

[10]

Andersen, J. (1977). Rates of denitrification of undisturbed sediment from six lakes as a function of nitrate concentration, oxygen and temperature. Arch. Hydrobiol, 80, 147-159. 〈https://cir.nii.ac.jp/crid/1573387451030566016.bib?lang=en〉.

[11]

An, Q., Deng, S., Xu, J., Nan, H., Li, Z., & Song, J. L. (2020). Simultaneous reduction of nitrate and Cr(VI) by Pseudomonas aeruginosa strain G12 in wastewater. Ecotoxicology and Environmental Safety, 191, Article 110001. https://doi.org/10.1016/J.ECOENV.2019.110001

[12]

An, S., & Gardner, W. S. (2002). Dissimilatory nitrate reduction to ammonium (DNRA) as a nitrogen link, versus denitrification as a sink in a shallow estuary (Laguna Madre/Baffin Bay, Texas). Marine Ecology Progress Series, 237, 41-50. https://doi.org/10.3354/MEPS237041

[13]

Arora, S., & Sahni, D. (2016). Pesticides effect on soil microbial ecology and enzyme activity- An overview. Journal of Applied and Natural Science, 8(2), 1126-1132. https://doi.org/10.31018/JANS.V8I2.929

[14]

Arsyadi, A., Guo, Y., Ebihara, A., Sakagami, N., Sakoda, M., Tago, K., Kamijo, T., Ohta, H., & Nishizawa, T. (2023). A nitrate-transforming bacterial community dominates in the miscanthus rhizosphere on nitrogen-deficient volcanic deposits of Miyake-jima. Microorganisms, 11(2), https://doi.org/10.3390/MICROORGANISMS11020260/S1

[15]

Austin, A. T., Yahdjian, L., Stark, J. M., Belnap, J., Porporato, A., Norton, U., Ravetta, D. A., & Schaeffer, S. M. (2004). Water pulses and biogeochemical cycles in arid and semiarid ecosystems. Oecologia, 141(2), 221-235. https://doi.org/10.1007/S00442-004-1519-1/FIGURES/3

[16]

Babbin, A. R., Peters, B. D., Mordy, C. W., Widner, B., Casciotti, K. L., & Ward, B. B. (2017). Multiple metabolisms constrain the anaerobic nitrite budget in the Eastern Tropical South Pacific. Global Biogeochemical Cycles, 31(2), 258-271. https://doi.org/10.1002/2016GB005407

[17]

Bai, H., Liao, S., Wang, A., Huang, J., Shu, W., & Ye, J. (2019). High-efficiency inorganic nitrogen removal by newly isolated Pannonibacter phragmitetus B1. Bioresource Technology, 271, 91-99. https://doi.org/10.1016/J.BIORTECH.2018.09.090

[18]

Bai, J., Wang, X., Jia, J., Zhang, G., Wang, Y., & Zhang, S. (2017). Denitrification of soil nitrogen in coastal and inland salt marshes with different flooding frequencies. Physics and Chemistry of the Earth, Parts A/B/C, 97, 31-36. https://doi.org/10.1016/J.PCE.2017.01.015

[19]

Balderston, W. L., Sherr, B., & Payne, W. J. (1976). Blockage by acetylene of nitrous oxide reduction in Pseudomonas perfectomarinus. Applied and Environmental Microbiology, 31(4), 504-508. https://doi.org/10.1128/AEM.31.4.504-508.1976

[20]

Barnard, R., Barthes, L., Le Roux, X., Harmens, H., Raschi, A., Soussana, J. F., Winkler, B., & Leadley, P. W. (2004). Atmospheric CO2 elevation has little effect on nitrifying and denitrifying enzyme activity in four European grasslands. Global Change Biology, 10(4), 488-497. https://doi.org/10.1111/J.1529-8817.2003.00746.X

[21]

Barnard, R., Barthes, L., Le Roux, X., & Leadley, P. W. (2004). Dynamics of nitrifying activities, denitrifying activities and nitrogen in grassland mesocosms as altered by elevated CO2. New Phytologist, 162(2), 365-376. https://doi.org/10.1111/J.1469-8137.2004.01038.X

[22]

Barnard, R., Leadley, P. W., & Hungate, B. A. (2005). Global change, nitrification, and denitrification: A review. Global Biogeochemical Cycles, 19(1), 1-13. https://doi.org/10.1029/2004GB002282

[23]

Behzadipour, H., & Sadrekarimi, A. (2024). Effects of microbially induced calcite precipitation on static liquefaction behavior of a gold tailings sand. Biogeotechnics, 2(4), https://doi.org/10.1016/j.bgtech.2024.100097

[24]

Berlin, M., Kumar, G. S., & Nambi, I. M. (2014). Numerical modeling on the effect of dissolved oxygen on nitrogen transformation and transport in unsaturated porous system. Environmental Modeling and Assessment, 19(4), 283-299. https://doi.org/10.1007/S10666-014-9399-1/FIGURES/14

[25]

Bernat, K., Wojnowska-Baryła, I., & Dobrzyńska, A. (2008). Denitrification with endogenous carbon source at low C/N and its effect on P(3HB) accumulation. Bioresource Technology, 99(7), 2410-2418. https://doi.org/10.1016/J.BIORTECH.2007.05.008

[26]

Bing, L., Ma, M., Liu, L., Wang, J., Niu, L., & Xi, F. (2023). An investigation of the global uptake of CO2 by lime from 1963 to 2020. Earth System Science Data, 15(6), 2431-2444. https://doi.org/10.5281/zenodo.7112485

[27]

Bonin, P., Gilewicz, M., & Bertrand, J.C. (2011). Effects of oxygen on each step of denitrification on Pseudomonas nautica. 35(11), 1061-1064. https://doi.org/10.1139/M89-177.

[28]

Bollag, J. M., & Henninger, N. M. (1976). Influence of pesticides on denitrification in soil and with an isolated bacterium. Journal of Environmental Quality, 5(1), 15-18. https://doi.org/10.2134/JEQ1976.00472425000500010002X

[29]

Borrero-de Acuña, J. M., Timmis, K. N., Jahn, M., & Jahn, D. (2017). Protein complex formation during denitrification by Pseudomonas aeruginosa. Microbial Biotechnology, 10(6), 1523-1534. https://doi.org/10.1111/1751-7915.12851

[30]

Bourceau, O. M., Ferdelman, T., Lavik, G., Mussmann, M., Kuypers, M. M. M., & Marchant, H. K. (2023). Simultaneous sulfate and nitrate reduction in coastal sediments. ISME Communications, 3(1), https://doi.org/10.1038/S43705-023-00222-Y

[31]

Boyle, S. A., Rich, J. J., Bottomley, P. J., Cromack, K., & Myrold, D. D. (2006). Reciprocal transfer effects on denitrifying community composition and activity at forest and meadow sites in the Cascade Mountains of Oregon. Soil Biology and Biochemistry, 38(5), 870-878. https://doi.org/10.1016/J.SOILBIO.2005.08.003

[32]

Braissant, O., Decho, A. W., Dupraz, C., Glunk, C., Przekop, K. M., & Visscher, P. T. (2007). Exopolymeric substances of sulfate-reducing bacteria: Interactions with calcium at alkaline pH and implication for formation of carbonate minerals. Geobiology, 5(4), 401-411. https://doi.org/10.1111/J.1472-4669.2007.00117.X

[33]

Braker, G., Zhou, J., Wu, L., Devol, A. H., & Tiedje, J. M. (2000). Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities. Applied and Environmental Microbiology, 66(5), 2096. https://doi.org/10.1128/AEM.66.5.2096-2104.2000

[34]

Bremner, J. M., & Shaw, K. (1958). Denitrification in soil. Journal of Agricultural Science, 51(1), 40-52.

[35]

Bremner, J. M., & Yeomans, J. C. (1986). Effects of nitrification inhibitors on denitrification of nitrate in soil. Biology and Fertility of Soils, 2(4), 173-179. https://doi.org/10.1007/BF00260840/METRICS

[36]

Burbank, M., Weaver, T., Lewis, R., Williams, T., Williams, B., & Crawford, R. (2013). Geotechnical tests of sands following bioinduced calcite precipitation catalyzed by indigenous bacteria. Journal of Geotechnical and Geoenvironmental Engineering, 139(6), 928-936. https://doi.org/10.1061/(ASCE)GT.1943-5606.0000781

[37]

Buyanovsky, G. A., & Wagner, G. H. (1983). Annual cycles of carbon dioxide level in soil air. Soil Science Society of America Journal, 47(6), 1139-1145. https://doi.org/10.2136/SSSAJ1983.03615995004700060016X

[38]

Cardol, P., Figueroa, F., Remacle, C., Franzén, L. G., & González-Halphen, D. (2009). Oxidative phosphorylation: Building blocks and related components. The Chlamydomonas Sourcebook 3-Vol Set, 2, 469-502. https://doi.org/10.1016/B978-0-12-370873-1.00021-6

[39]

Castanier, S., Le Métayer-Levrel, G., & Perthuisot, J.-P. (1999). Ca-carbonates precipitation and limestone genesis — the microbiogeologist point of view. Sedimentary Geology, 126(1-4), 9-23. https://doi.org/10.1016/S0037-0738(99)00028-7

[40]

Castro-Alonso, M. J., Montañez-Hernandez, L. E., Sanchez-Muñoz, M. A., Macias Franco, M. R., Narayanasamy, R., & Balagurusamy, N. (2019). Microbially induced calcium carbonate precipitation (MICP) and its potential in bioconcrete: Microbiological and molecular concepts. Frontiers in Materials, 6, Article 458036. https://doi.org/10.3389/FMATS.2019.00126/BIBTEX

[41]

Cavigelli, M. A., Philip, G., & Kellogg, R. W. K. (2000). The functional significance of denitrifier community composition in a terrestrial ecosystem. Ecology, 81(5), 1402-1414. https://doi.org/10.1890/0012-9658(2000)081

[42]

Cavigelli, M. A., & Robertson, G. P. (2001). Role of denitrifier diversity in rates of nitrous oxide consumption in a terrestrial ecosystem. Soil Biology and Biochemistry, 33(3), 297-310. https://doi.org/10.1016/S0038-0717(00)00141-3

[43]

Chen, C.-L., & Sung, J.-M. (1983). Effect of water stress on the reduction of nitrate and nitrite by soybean nodules. Plant Physiology, 73(4), 1065-1066. https://doi.org/10.1104/PP.73.4.1065

[44]

Chèneby, D., Hartmann, A., Hénault, C., Topp, E., & Germon, J. C. (1998). Diversity of denitrifying microflora and ability to reduce N2O in two soils. Biology and Fertility of Soils, 28(1), 19-26. https://doi.org/10.1007/S003740050458/METRICS

[45]

Cheng, Y., Elrys, A. S., Merwad, A. R. M., Zhang, H., Chen, Z., Zhang, J., Cai, Z., & Müller, C. (2022). Global patterns and drivers of soil dissimilatory nitrate reduction to ammonium. Environmental Science and Technology, 56(6), 3791-3800. https://doi.org/10.1021/ACS.EST.1C07997/ASSET/IMAGES/LARGE/ES1C07997_0006.JPEG

[46]

Chénier, M. R., Beaumier, D., Fortin, N., Roy, R., Driscoll, B. T., Lawrence, J. R., & Greer, C. W. (2006). Influence of nutrient inputs, hexadecane, and temporal variations on denitrification and community composition of river biofilms. Applied and Environmental Microbiology, 72(1), 575-584. https://doi.org/10.1128/AEM.72.1.575-584.2006/ASSET/BDF2D748-70AC-424F-99A0-18A0DAE46DC6/ASSETS/GRAPHIC/ZAM0010663410005.JPEG

[47]

Chen, J., Hanke, A., Tegetmeyer, H. E., Kattelmann, I., Sharma, R., Hamann, E., Hargesheimer, T., Kraft, B., Lenk, S., Geelhoed, J. S., Hettich, R. L., & Strous, M. (2017). Impacts of chemical gradients on microbial community structure. The ISME Journal, 11(4), 920-931. https://doi.org/10.1038/ISMEJ.2016.175

[48]

Chen, J., & Strous, M. (2013). Denitrification and aerobic respiration, hybrid electron transport chains and co-evolution. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1827(2), 136-144. https://doi.org/10.1016/J.BBABIO.2012.10.002

[49]

Chen, L., Wei, B., & Xu, X. (2021). Effect of sulfate-reducing bacteria (SRB) on the corrosion of buried pipe steel in acidic soil solution. 2021, Vol. 11, Page 625 Coatings, 11(6), 625. https://doi.org/10.3390/COATINGS11060625

[50]

Chen, Q. (2019). Characteristics of soil profile CO2 concentrations in karst areas and their significance for global carbon cycles and climate change. Earth System Dynamics, 10(3), 525-538. https://doi.org/10.5194/ESD-10-525-2019

[51]

Cherchi, C., Onnis-Hayden, A., El-Shawabkeh, I., & Gu, A. Z. (2009). Implication of using different carbon sources for denitrification in wastewater treatments. Water Environment Research, 81(8), 788-799. https://doi.org/10.2175/106143009X12465435982610

[52]

Chu, L., & Wang, J. (2011). Nitrogen removal using biodegradable polymers as carbon source and biofilm carriers in a moving bed biofilm reactor. Chemical Engineering Journal, 170(1), 220-225. https://doi.org/10.1016/J.CEJ.2011.03.058

[53]

Chu, L., & Wang, J. (2016). Denitrification of groundwater using PHBV blends in packed bed reactors and the microbial diversity. Chemosphere, 155, 463-470. https://doi.org/10.1016/J.CHEMOSPHERE.2016.04.090

[54]

Chutivisut, P., Isobe, K., Powtongsook, S., Pungrasmi, W., & Kurisu, F. (2018). Distinct microbial community performing dissimilatory nitrate reduction to ammonium (DNRA) in a high C/NO3- reactor. Microbes and Environments, 33(3), 264-271. https://doi.org/10.1264/JSME2.ME17193

[55]

Cuisinier, O., Le Borgne, T., Deneele, D., & Masrouri, F. (2011). Quantification of the effects of nitrates, phosphates and chlorides on soil stabilization with lime and cement. Engineering Geology, 117(3-4), 229-235. https://doi.org/10.1016/j.enggeo.2010.11.002

[56]

Culbertson, C. W., Zehnder, A. J. B., & Oremland, R. S. (1981). Anaerobic oxidation of acetylene by estuarine sediments and enrichment cultures. Applied and Environmental Microbiology, 41(2), 396-403. https://doi.org/10.1128/AEM.41.2.396-403.1981

[57]

Cyplik, P., Grajek, W., Marecik, R., & Kroliczak, P. (2007). Effect of macro/micro nutrients and carbon source over the denitrification rate of Haloferax denitrificans archaeon. Enzyme and Microbial Technology, 40(2), 212-220. https://doi.org/10.1016/J.ENZMICTEC.2006.04.003

[58]

Davies, K. J. P., Lloyd, D., & Boddy, L. (1989). The effect of oxygen on denitrification in Paracoccus denitrificans and Pseudomonas aeruginosa. Journal of General Microbiology, 135(9), 2445-2451. https://doi.org/10.1099/00221287-135-9-2445/CITE/REFWORKS

[59]

Day, F. P., West, S. K., & Tupacz, E. G. (1988). The influence of ground-water dynamics in a periodically flooded ecosystem, the Great Dismal Swamp. Wetlands, 8(1), 1-13. https://doi.org/10.1007/BF03160805/METRICS

[60]

DeJong, J. T., Mortensen, B. M., Martinez, B. C., & Nelson, D. C. (2010). Bio-mediated soil improvement. Ecological Engineering, 36(2), 197-210. https://doi.org/10.1016/j.ecoleng.2008.12.029

[61]

de Oliveira, D., Horn, E. J., & Randall, D. G. (2021). Copper mine tailings valorization using microbial induced calcium carbonate precipitation. Journal of Environmental Management, 298, Article 113440. https://doi.org/10.1016/j.jenvman.2021.113440

[62]

Diner, R. E., Schwenck, S. M., McCrow, J. P., Zheng, H., & Allen, A. E. (2016). Genetic manipulation of competition for nitrate between heterotrophic bacteria and diatoms. Frontiers in Microbiology, 7(JUN), 880. https://doi.org/10.3389/FMICB.2016.00880

[63]

Dlamini, J. C., Chadwick, D., Hawkins, J. M. B., Martinez, J., Scholefield, D., Ma, Y., & Cárdenas, L. M. (2020). Evaluating the potential of different carbon sources to promote denitrification. The Journal of Agricultural Science, 158(3), 194-205. https://doi.org/10.1017/S0021859620000520

[64]

Elefsiniotis, P., & Li, D. (2006). The effect of temperature and carbon source on denitrification using volatile fatty acids. Biochemical Engineering Journal, 28(2), 148-155. https://doi.org/10.1016/J.BEJ.2005.10.004

[65]

Enoch, H., & Dasberg, S. (1971). The occurrence of high CO2, concentrations in soil air. Geoderma, 6(1), 17-21. https://doi.org/10.1016/0016-7061(71)90048-6

[66]

Enrich-Prast, A., Bastviken, D., Crill, P., Santoro, A. L., Signori, C. N., & Sanseverino, A. M. (2014). Chemosynthesis. Reference Module in Earth Systems and Environmental Sciences. https://doi.org/10.1016/B978-0-12-409548-9.09054-0

[67]

Erisman, J.W., & De Vries, W. (2011). Nitrogen deposition and effects on European forests. Https://Doi.Org/10.1139/A00-006, 8(2), 65-93. https://doi.org/10.1139/A00-006.

[68]

Erşan, Y.Ç., de, Belie, N., & Boon, N. (2015). Microbially induced CaCO3 precipitation through denitrification: An optimization study in minimal nutrient environment. Biochemical Engineering Journal, 101, 108-118. https://doi.org/10.1016/J.BEJ.2015.05.006

[69]

Fang, C., & Achal, V. (2024a). Enhanced steel corrosion inhibition through microbially induced carbonate precipitation with facultative anaerobic denitrifying bacterium. Case Studies in Construction Materials, 21. https://doi.org/10.1016/j.cscm.2024.e03607

[70]

Fang, C., & Achal, V. (2024b). Enhancing carbon neutrality: A perspective on the role of Microbially Induced Carbonate Precipitation (MICP). Biogeotechnics, 2 KeAi Communications Co https://doi.org/10.1016/j.bgtech.2024.100083

[71]

Fedorova, R. I., Milekhina, E. I., & Il’Yukhina, N. I. (1973). Evaluation of the method of “gas metabolism” for detecting extraterrestrial life. Identification of nitrogen-fixing microorganisms. Izv. Akad. Nauk SSSR Ser. Biol, 6, 797-806.

[72]

Fenn, M. E., Poth, M. A., Aber, J. D., Baron, J. S., Bormann, B. T., Johnson, D. W., Lemly, A. D., Mcnulty, S. G., Ryan, D. F., & Stottlemyer, R. (1998). Nitrogen excess in North American ecosystems: Predisposing factors, ecosystem responses, and management strategies. Ecological Applications, 8(3), 706-733. https://doi.org/10.1890/1051-0761(1998)008

[73]

Ferraris, F., & Vila, T. (1990). Volcanic sulfur deposits in the andes of northern Chile. Stratabound Ore Deposits in the Andes, 691-701. https://doi.org/10.1007/978-3-642-88282-1_55

[74]

Firestone, M. K., Firestone, R. B., & Tiedje, J. M. (1980). Nitrous oxide from soil denitrification: Factors controlling its biological production. Science, 208(4445), 749-751. https://doi.org/10.1126/SCIENCE.208.4445.749

[75]

Firestone, M. K., Smith, M. S., Firestone, R. B., & Tiedje, J. M. (1979). The influence of nitrate, nitrite, and oxygen on the composition of the gaseous products of denitrification in soil. Soil Science Society of America Journal, 43(6), 1140-1144. https://doi.org/10.2136/SSSAJ1979.03615995004300060016X

[76]

Fischer, E. N., & Whalen, S. C. (2005). Rates and controls on denitrification in an agricultural soil fertilized with liquid lagoonal swine waste. Nutrient Cycling in Agroecosystems, 71(3), 271-287. https://doi.org/10.1007/S10705-004-6379-X/METRICS

[77]

Franklin, R. B., Morrissey, E. M., & Morina, J. C. (2017). Changes in abundance and community structure of nitrate-reducing bacteria along a salinity gradient in tidal wetlands. Pedobiologia, 60, 21-26. https://doi.org/10.1016/J.PEDOBI.2016.12.002

[78]

Fuchsman, C. A., Devol, A. H., Saunders, J. K., McKay, C., & Rocap, G. (2017). Niche partitioning of the N cycling microbial community of an offshore oxygen deficient zone. Frontiers in Microbiology, 8(DEC), Article 303276. https://doi.org/10.3389/FMICB.2017.02384/BIBTEX

[79]

Fu, M. H., & Tabatabai, M. A. (1989). Nitrate reductase activity in soils: Effects of trace elements. Soil Biology and Biochemistry, 21(7), 943-946. https://doi.org/10.1016/0038-0717(89)90085-0

[80]

Gao, D., Li, Y., & Liang, H. (2022a). Biofilm carriers for anaerobic ammonium oxidation: Mechanisms, applications, and roles in mainstream systems. Bioresource Technology, 353, Article 127115. https://doi.org/10.1016/J.BIORTECH.2022.127115

[81]

Gao, Y., Wang, L., He, J., Ren, J., & Gao, Y. (2022b). Denitrification-based MICP for cementation of soil: Treatment process and mechanical performance. Acta Geotechnica, 17(9), 3799-3815. https://doi.org/10.1007/s11440-022-01489-6

[82]

Ge, S., Peng, Y., Wang, S., Lu, C., Cao, X., & Zhu, Y. (2012). Nitrite accumulation under constant temperature in anoxic denitrification process: The effects of carbon sources and COD/NO3-N. Bioresource Technology, 114, 137-143. https://doi.org/10.1016/J.BIORTECH.2012.03.016

[83]

Ghani, A., McLarren, R. G., & Swift, R. S. (1993). Mobilization of recently-formed soil organic sulphur. Soil Biology and Biochemistry, 25(12), 1739-1744. https://doi.org/10.1016/0038-0717(93)90178-E

[84]

Glass, C., & Silverstein, J. (1998). Denitrification kinetics of high nitrate concentration water: pH effect on inhibition and nitrite accumulation. Water Research, 32(3), 831-839. https://doi.org/10.1016/S0043-1354(97)00260-1

[85]

Gordon, H., Haygarth, P. M., & Bardgett, R. D. (2008). Drying and rewetting effects on soil microbial community composition and nutrient leaching. Soil Biology and Biochemistry, 40(2), 302-311. https://doi.org/10.1016/J.SOILBIO.2007.08.008

[86]

Grant, M. A., & Payne, W. J. (1982). Effects of pesticides on denitrifying activity in salt marsh sediments. Journal of Environmental Quality, 11(3), 369-372. https://doi.org/10.2134/JEQ1982.00472425001100030009X

[87]

Gross, J., & Adaska, W. (2020). Guide to Cement-Stabilized Subgrade Soils-PCA Special Report SR1007P. https://cptechcenter.org.

[88]

Gui, M., Chen, Q., Ma, T., Zheng, M., & Ni, J. (2017). Effects of heavy metals on aerobic denitrification by strain Pseudomonas stutzeri PCN-1. Applied Microbiology and Biotechnology, 101(4), 1717-1727. https://doi.org/10.1007/S00253-016-7984-8/FIGURES/7

[89]

Gundersen, P. (1991). Nitrogen deposition and the forest nitrogen cycle: Role of denitrification. Forest Ecology and Management, 44(1), 15-28. https://doi.org/10.1016/0378-1127(91)90194-Z

[90]

Guo, L. J., Zhao, B., An, Q., & Tian, M. (2016). Characteristics of a novel aerobic denitrifying bacterium, enterobacter cloacae strain HNR. Applied Biochemistry and Biotechnology, 178(5), 947-959. https://doi.org/10.1007/S12010-015-1920-8/METRICS

[91]

Gupta, S., & Nirwan, J. (2014). Evaluation of mercury biotransformation by heavy metal-tolerant Alcaligenes strain isolated from industrial sludge. 2014 12:3 International Journal of Environmental Science and Technology, 12(3), 995-1002. https://doi.org/10.1007/S13762-013-0484-9

[92]

Gutierrez-Wing, M. T., Malone, R. F., & Rusch, K. A. (2012). Evaluation of polyhydroxybutyrate as a carbon source for recirculating aquaculture water denitrification. Aquacultural Engineering, 51, 36-43. https://doi.org/10.1016/J.AQUAENG.2012.07.002

[93]

Gu, T., Jia, R., Unsal, T., & Xu, D. (2019). Toward a better understanding of microbiologically influenced corrosion caused by sulfate reducing bacteria. Journal of Materials Science Technology, 35(4), 631-636. https://doi.org/10.1016/J.JMST.2018.10.026

[94]

Güven, D., & Güven, D. (2009). Effects of different carbon sources on denitrification efficiency associated with culture adaptation and C/N ratio. CLEAN - Soil, Air, Water, 37(7), 565-573. https://doi.org/10.1002/CLEN.200800198

[95]

Hammerl, V., Kastl, E. M., Schloter, M., Kublik, S., Schmidt, H., Welzl, G., Jentsch, A., Beierkuhnlein, C., & Gschwendtner, S. (2019). Influence of rewetting on microbial communities involved in nitrification and denitrification in a grassland soil after a prolonged drought period. 2019 9:1 Scientific Reports, 9(1), 1-10. https://doi.org/10.1038/s41598-018-38147-5

[96]

He, D., Zheng, M., Ma, T., Li, C., & Ni, J. (2015). Interaction of Cr(VI) reduction and denitrification by strain Pseudomonas aeruginosa PCN-2 under aerobic conditions. Bioresource Technology, 185, 346-352. https://doi.org/10.1016/J.BIORTECH.2015.02.109

[97]

He, H., Xu, N., Qin, Y., Xu, T., & Guo, Y. (2024). Study on the improvement of grouting stone properties in coal mine goafs using combined denitrifying bacteria. Royal Society Open Science, 11(9), https://doi.org/10.1098/rsos.240993

[98]

Henault, C., Devis, X., Page, S., Justes, E., Reau, R., & Germon, J. C. (1998). Nitrous oxide emissions under different soil and land management conditions. Biology and Fertility of Soils, 26(3), 199-207. https://doi.org/10.1007/S003740050368/METRICS

[99]

Herbert, E. R., Boon, P., Burgin, A. J., Neubauer, S. C., Franklin, R. B., Ardón, M., Hopfensperger, K. N., Lamers, L. P. M., & Gell, P. (2015). A global perspective on wetland salinization: Ecological consequences of a growing threat to freshwater wetlands. Ecosphere, 6(10), 1-43. https://doi.org/10.1890/ES14-00534.1

[100]

Holbak, M., Abrahamsen, P., & Diamantopoulos, E. (2022). Modeling preferential water flow and pesticide leaching to drainpipes: The effect of drain-connecting and matrix-terminating biopores. e2021WR031608 Water Resources Research, 58(7), https://doi.org/10.1029/2021WR031608

[101]

Hollocher, T. C., & Kristjansson, J. K. (1992). Thermophilic denitrifying bacteria: A survey of hot springs in Southwestern Iceland. FEMS Microbiology Ecology, 10(2), 113-119. https://doi.org/10.1111/J.1574-6941.1992.TB00005.X

[102]

Holtan-Hartwig, L., Dörsch, P., & Bakken, L. R. (2000). Comparison of denitrifying communities in organic soils: kinetics of NO3 and N2O reduction. Soil Biology and Biochemistry, 32(6), 833-843. https://doi.org/10.1016/S0038-0717(99)00213-8

[103]

Holtan-Hartwig, L., Dörsch, P., & Bakken, L. R. (2002). Low temperature control of soil denitrifying communities: Kinetics of N2O production and reduction. Soil Biology and Biochemistry, 34(11), 1797-1806. https://doi.org/10.1016/S0038-0717(02)00169-4

[104]

Hong, P., Wu, X., Shu, Y., Wang, C. B., Tian, C., Gong, S., Cai, P., Donde, O. O., & Xiao, B. (2019). Denitrification characterization of dissolved oxygen microprofiles in lake surface sediment through analyzing abundance, expression, community composition and enzymatic activities of denitrifier functional genes. AMB Express, 9(1), 1-10. https://doi.org/10.1186/S13568-019-0855-9/FIGURES/4

[105]

Hongxia, M., Shuaijun, Z., Jiwen, L., Jie, S., Kaijia, R., Jiannan, L., Quanrui, C., Yinyin, S., Tingting, S., & Jingfeng, F. (2024). Promoting the denitrification process by heavy metals in Liaohe Estuary sediment. Marine Pollution Bulletin, 203, Article 116408. https://doi.org/10.1016/J.MARPOLBUL.2024.116408

[106]

Hou, C., Wang, Y., Su, J., Ren, M., Wang, X., & Wang, Y. (2025). Simultaneous removal of nitrate, copper, carbamazepine, and calcium from micropolluted water by fulvic acid through promotion of denitrification and microbial-induced calcium precipitation: Performance and mechanism. Bioresource Technology, 415. https://doi.org/10.1016/j.biortech.2024.131695

[107]

Huang, W., Chen, Z., Liu, H., Wang, H., & Wei, Z. (2024). Microbial induced carbonate precipitation for cadmium removal in flue gas from sludge incineration. Journal of Environmental Chemical Engineering, 12(3), https://doi.org/10.1016/j.jece.2024.112573

[108]

Hu, Y., Wang, L., Tang, Y., Li, Y., Chen, J., Xi, X., Zhang, Y., Fu, X., Wu, J., & Sun, Y. (2014). Variability in soil microbial community and activity between coastal and riparian wetlands in the Yangtze River estuary - Potential impacts on carbon sequestration. Soil Biology and Biochemistry, 70, 221-228. https://doi.org/10.1016/J.SOILBIO.2013.12.025

[109]

Intergovernmental Panel on Climate Change (IPCC). (2014). Climate change 2014: synthesis report.

[110]

Jain, S., Fang, C., & Achal, V. (2021). A critical review on microbial carbonate precipitation via denitrification process in building materials. Bioengineered, 12(1), 7529. https://doi.org/10.1080/21655979.2021.1979862

[111]

Jiang, M., Li, T., Cui, Y., & Zhu, H. (2017). Mechanical behavior of artificially cemented clay with open structure: Cell and physical model analyses. Engineering Geology, 221, 133-142. https://doi.org/10.1016/j.enggeo.2017.03.002

[112]

Johnston, D. W., Holding, A. J., & McCluskie, J. E. (1974). Preliminary Comparative Studies on Denitrification and Methane Production in Loch Leven, Kinross, and other Freshwater Lakes. Proceedings of the Royal Society of Edinburgh, Section B: Biological Sciences, 74, 123-133. https://doi.org/10.1017/S0080455X00012352

[113]

Jones, J. G. (1979). Microbial nitrate reduction in freshwater sediments. Journal of General Microbiology, 115(1), 27-35. https://doi.org/10.1099/00221287-115-1-27/CITE/REFWORKS

[114]

Jordan, H. V., & Ensminger, L. E. (1959). The role of sulfur in soil fertility. Advances in Agronomy, 10(C), 407-434. https://doi.org/10.1016/S0065-2113(08)60071-1

[115]

Jørgensen, K. S., & Pauli, A. S. L. (1995). Polyphosphate accumulation among denitrifying bacteria in activated sludge. Anaerobe, 1(3), 161-168. https://doi.org/10.1006/ANAE.1995.1014

[116]

Kalajahi, S. T., Rasekh, B., Yazdian, F., Neshati, J., & Taghavi, L. (2021). Corrosion behaviour of X60 steel in the presence of sulphate-reducing bacteria (SRB) and iron-reducing bacteria (IRB) in seawater. Corrosion Engineering Science and Technology, 56(6), 543-552. https://doi.org/10.1080/1478422X.2021.1919840/ASSET/IMAGES/MEDIUM/10.1080_1478422X.2021.1919840-EQ3041.GIF

[117]

Kanerva, T., Palojärvi, A., Rämö K., Ojanperä K., Esala, M., & Manninen, S. (2006). A 3-year exposure to CO2 and O3 induced minor changes in soil N cycling in a meadow ecosystem. Plant and Soil, 286(1-2), 61-73. https://doi.org/10.1007/S11104-006-9026-2/METRICS

[118]

Kanner, D., & Bartha, R. (1979). Growth of Nocardia rhodochrous on acetylene gas. Journal of Bacteriology, 139(1), 225-230. https://doi.org/10.1128/JB.139.1.225-230.1979

[119]

Karatas, I. (2008). Microbiological improvement of the physical properties of soils. Arizona State University.

[120]

Karim, R., Reading, L., Dawes, L., Dahan, O., & Orr, G. (2023). Pesticide transport through the vadose zone under sugarcane in the Wet Tropics, Australia. SOIL, 9(2), 381-398. https://doi.org/10.5194/SOIL-9-381-2023

[121]

Kessler, A. J., Roberts, K. L., Bissett, A., & Cook, P. L. M. (2018). Biogeochemical controls on the relative importance of denitrification and dissimilatory nitrate reduction to ammonium in estuaries. Global Biogeochemical Cycles, 32(7), 1045-1057. https://doi.org/10.1029/2018GB005908

[122]

Khalifah, S., & Foltz, M. E. (2024). The ratio of denitrification end-products were influenced by soil pH and clay content across different texture classes in Oklahoma soils. Frontiers in Soil Science, 4, 1342986. https://doi.org/10.3389/FSOIL.2024.1342986/BIBTEX

[123]

Kim, M., Jeong, S. Y., Yoon, S. J., Cho, S. J., Kim, Y. H., Kim, M. J., Ryu, E. Y., & Lee, S. J. (2008). Aerobic denitrification of Pseudomonas putida AD-21 at different C/N ratios. Journal of Bioscience and Bioengineering, 106(5), 498-502. https://doi.org/10.1263/JBB.106.498

[124]

Knowles, R. (1982). Denitrification. Microbiological Reviews, 46(1), 43-70. https://doi.org/10.1128/MR.46.1.43-70.1982

[125]

Kornaros, M., Zafiri, C., & Lyberatos, G. (1996). Kinetics of denitrification by Pseudomonas denitrificans under growth conditions limited by carbon and/or nitrate or nitrite. In Water Environment Research, 68(5).

[126]

Koskinen, W. C., & Keeney, D. R. (1982). Effect of pH on the rate of gaseous products of denitrification in a silt loam soil. Soil Science Society of America Journal, 46(6), 1165-1167. https://doi.org/10.2136/SSSAJ1982.03615995004600060009X

[127]

Kowalenko, C. G. (1979). The influence of sulfur anions on denitrification. Canadian Journal of Soil Science, 59(2), 221-223.

[128]

Kraft, B., Strous, M., & Tegetmeyer, H. E. (2011). Microbial nitrate respiration - genes, enzymes and environmental distribution. Journal of Biotechnology, 155(1), 104-117. https://doi.org/10.1016/J.JBIOTEC.2010.12.025

[129]

Kuenen, J. G. (2008). Anammox bacteria: from discovery to application. 2008 6:4 Nature Reviews Microbiology, 6(4), 320-326. https://doi.org/10.1038/nrmicro1857

[130]

Kumar, M., Yadav, A. N., Saxena, R., Paul, D., & Tomar, R. S. (2021). Biodiversity of pesticides degrading microbial communities and their environmental impact. Biocatalysis and Agricultural Biotechnology, 31, Article 101883. https://doi.org/10.1016/J.BCAB.2020.101883

[131]

Kuypers, M. M. M., Marchant, H. K., & Kartal, B. (2018). The microbial nitrogen-cycling network. 2018 16:5 Nature Reviews Microbiology, 16(5), 263-276. https://doi.org/10.1038/nrmicro.2018.9

[132]

Kuzyakov, Y., & Xu, X. (2013). Competition between roots and microorganisms for nitrogen: Mechanisms and ecological relevance. New Phytologist, 198(3), 656-669. https://doi.org/10.1111/NPH.12235

[133]

Labrado, A. L., Brunner, B., Bernasconi, S. M., & Peckmann, J. (2019). Formation of large native sulfur deposits does not require molecular oxygen. Frontiers in Microbiology, 10(JAN), Article 427750. https://doi.org/10.3389/FMICB.2019.00024/BIBTEX

[134]

Lai, H., Ding, X., Cui, M., Zheng, J., Chen, Z., Pei, J., & Zhang, J. (2023). Mechanisms and influencing factors of biomineralization based heavy metal remediation: A review. Biogeotechnics, 1. https://doi.org/10.1016/j.bgtech.2023.100039

[135]

Lam, P., & Kuypers, M. M. M. (2011). Microbial nitrogen cycling processes in oxygen minimum zones. 2011 Annual Review of Marine Science, 3(3), 317-345. https://doi.org/10.1146/ANNUREV-MARINE-120709-142814/CITE/REFWORKS

[136]

Lee, K. C., & Rittmann, B. E. (2003). Effects of pH and precipitation on autohydrogenotrophic denitrification using the hollow-fiber membrane-biofilm reactor. Water Research, 37(7), 1551-1556. https://doi.org/10.1016/S0043-1354(02)00519-5

[137]

Liang, C. N., & Tabatabai, M. A. (1978). Effects of trace elements on nitrification in soils. Journal of Environmental Quality, 7(2), 291-293. https://doi.org/10.2134/JEQ1978.00472425000700020028X

[138]

Liao, R., Miao, Y., Li, J., Li, Y., Wang, Z., Du, J., Li, Y., Li, A., & Shen, H. (2018). Temperature dependence of denitrification microbial communities and functional genes in an expanded granular sludge bed reactor treating nitrate-rich wastewater. RSC Advances, 8(73), 42087-42094. https://doi.org/10.1039/c8ra08256a

[139]

Li, J., Wang, Z., Su, J., Wang, X., Ali, A., & Li, X. (2024). Microbial induced calcium precipitation by Zobellella denitrificans sp. LX16 to simultaneously remove ammonia nitrogen, calcium, and chemical oxygen demand in reverse osmosis concentrates. Environmental Research, 240. https://doi.org/10.1016/j.envres.2023.117484

[140]

Lindtke, J., Ziegenbalg, S. B., Brunner, B., Rouchy, J. M., Pierre, C., & Peckmann, J. (2011). Authigenesis of native sulphur and dolomite in a lacustrine evaporitic setting (Hellín basin, Late Miocene, SE Spain). Geological Magazine, 148(4), 655-669. https://doi.org/10.1017/S0016756811000124

[141]

Linne von Berg, K. H., & Bothe, H. ( 1992). The distribution of denitrifying bacteria in soils monitored by DNA-probing. FEMS Microbiology Letters, 86(4), 331-336. https://doi.org/10.1016/0378-1097(92)90797-R

[142]

Li, P., Zuo, J., Xing, W., Tang, L., Ye, X., Li, Z., Yuan, L., Wang, K., & Zhang, H. (2013). Starch/polyvinyl alcohol blended materials used as solid carbon source for tertiary denitrification of secondary effluent. Journal of Environmental Sciences, 25(10), 1972-1979. https://doi.org/10.1016/S1001-0742(12)60259-9

[143]

Li, S., Liao, Y., Pang, Y., Dong, X., Strous, M., & Ji, G. (2022). Denitrification and dissimilatory nitrate reduction to ammonia in long-term lake sediment microcosms with iron(II). Science of The Total Environment, 807, Article 150835. https://doi.org/10.1016/J.SCITOTENV.2021.150835

[144]

Liu, B., Mørkved, P. T., Frostegård, Å., & Bakken, L. R. (2010). Denitrification gene pools, transcription and kinetics of NO, N2O and N2 production as affected by soil pH. FEMS Microbiology Ecology, 72(3), 407-417. https://doi.org/10.1111/J.1574-6941.2010.00856.X

[145]

Liu, E., Fan, C., Zhao, M., Jiang, S., Wang, Z., Jin, Z.,... Zeng, Q. (2022a). Effects of heavy metals on denitrification processes in water treatment: A review. Separation and Purification Technology, 299, Article 121793. https://doi.org/10.1016/J.SEPPUR.2022.121793

[146]

Liu, H., & Cheng, Y. F. (2020). Microbial corrosion of initial perforation on abandoned pipelines in wet soil containing sulfate-reducing bacteria. Colloids and Surfaces B: Biointerfaces, 190, Article 110899. https://doi.org/10.1016/J.COLSURFB.2020.110899

[147]

Liu, H., Hu, Q., Chen, N., & Feng, C. (2021). Effects of trace elements and current densities on denitrification, microbe growth, ATP generation and enzyme activity in a bioelectrochemical reactor. International Journal of Electrochemical Science, 16(12), Article 211243. https://doi.org/10.20964/2021.12.10

[148]

Li, X., Xiao, H., Zhang, W., Li, Y., Tang, X., Duan, J., Yang, Z., Wang, J., Guan, F., & Ding, G. (2019). Analysis of cultivable aerobic bacterial community composition and screening for facultative sulfate-reducing bacteria in marine corrosive steel. Journal of Oceanology and Limnology, 37(2), 600-614. https://doi.org/10.1007/S00343-019-7400-1/METRICS

[149]

Li, X., Zhao, J., Zhang, Y., He, J., Ma, K., & Liu, C. (2022). Role of organic/sulfide ratios on competition of DNRA and denitrification in a co-driven sequencing biofilm batch reactor. Environmental Science and Pollution Research, 29(13), 18793-18804. https://doi.org/10.1007/S11356-021-17058-5/METRICS

[150]

Liu, J., Su, J., Ali, A., Wang, Z., & Zhang, R. (2022b). Potential of a novel facultative anaerobic denitrifying Cupriavidus sp. W12 to remove fluoride and calcium through calcium bioprecipitation. Journal of Hazardous Materials, 423. https://doi.org/10.1016/j.jhazmat.2021.126976

[151]

Lloyd, D., Boddy, L., & Davies, K. J. P. (1987). Persistence of bacterial denitrification capacity under aerobic conditions: The rule rather than the exception. FEMS Microbiology Ecology, 3(3), 185-190. https://doi.org/10.1111/J.1574-6968.1987.TB02354.X

[152]

Lu, Z., Gan, L., Lin, J., & Chen, Z. (2019). Aerobic denitrification by Paracoccus sp. YF1 in the presence of Cu(II). Science of The Total Environment, 658, 80-86. https://doi.org/10.1016/J.SCITOTENV.2018.12.225

[153]

Marks, B. M., Chambers, L., & White, J. R. (2016). Effect of fluctuating salinity on potential denitrification in coastal wetland soil and sediments. Soil Science Society of America Journal, 80(2), 516-526. https://doi.org/10.2136/SSSAJ2015.07.0265

[154]

Martens, D. A. (2005). Denitrification. Encyclopedia of Soils in the Environment, 4, 378-382. https://doi.org/10.1016/B0-12-348530-4/00138-7

[155]

Martin, D., Dodds, K., Butler, I. B., & Ngwenya, B. T. (2013). Carbonate precipitation under pressure for bioengineering in the anaerobic subsurface via denitrification. Environmental Science and Technology, 47(15), 8692-8699. https://doi.org/10.1021/ES401270Q/SUPPL_FILE/ES401270Q_SI_001.PDF

[156]

Marušincová H., Husárová L., Růžička, J., Ingr, M., Navrátil, V., Buňková L., & Koutny, M. (2013). Polyvinyl alcohol biodegradation under denitrifying conditions. International Biodeterioration Biodegradation, 84, 21-28. https://doi.org/10.1016/J.IBIOD.2013.05.023

[157]

Matsubara, T., & Mori, T. (1968). Studies on denitrification: IX. Nitrous Oxide, Its production and reduction to nitrogen. The Journal of Biochemistry, 64(6), 863-871. https://doi.org/10.1093/OXFORDJOURNALS.JBCHEM.A128968

[158]

Matsuya, Y., Sato, T., Nakamura, R., -, al, Ranjan, S., Schwieterman, E. W., Harman, C., Zhang, X., & Zhang, J. (2018). Effect of dissolved oxygen on biological denitrification using biodegradable plastic as the carbon source. IOP Conference Series: Earth and Environmental Science, 121(3), Article 032015. https://doi.org/10.1088/1755-1315/121/3/032015

[159]

McElhannon, W. S., & Mills, H. A. (1981a). Inhibition of denitrification by nitrapyrin with field-grown sweet corn. Journal of the American Society for Horticultural Science, 106(5), 673-677. https://doi.org/10.21273/JASHS.106.5.673

[160]

McElhannon, W. S., & Mills, H. A. (1981b). Suppression of Denitrification with nitrapyrin. HortScience, 16(4), 530-531. https://doi.org/10.21273/HORTSCI.16.4.530

[161]

Medinets, S., Skiba, U., Rennenberg, H., & Butterbach-Bahl, K. (2015). A review of soil NO transformation: Associated processes and possible physiological significance on organisms. Soil Biology and Biochemistry, 80, 92-117. https://doi.org/10.1016/J.SOILBIO.2014.09.025

[162]

Meng, X., Li, Y., Yao, H., Wang, J., Dai, F., Wu, Y., & Chapman, S. (2020). Nitrification and urease inhibitors improve rice nitrogen uptake and prevent denitrification in alkaline paddy soil. Applied Soil Ecology, 154, Article 103665. https://doi.org/10.1016/J.APSOIL.2020.103665

[163]

Menyailo, O. V., Stepanov, A. L., & Umarov, M. M. (1998). Effect of salts on the denitrification product ratio in soils. Eurasian Soil Science, 31(3), 288-292 https://doi.org/10.0/FONT/BOOTSTRAP-ICONS.MIN.CSS.

[164]

Mergel, A., Kloos, K., & Bothe, H. (2001). Seasonal fluctuations in the population of denitrifying and N2-fixing bacteria in an acid soil of a norway spruce forest. Plant and Soil, 230(1), 145-160. https://doi.org/10.1023/A:1004826116981/METRICS

[165]

Michel, C., Baran, N., André L., & Joulian, C. (2020). Side effects of pesticides in groundwater: impact on bacterial denitrification. https://brgm.hal.science/hal-02907569.

[166]

Mohn, J., Schürmann, A., Hagedorn, F., Schleppi, P., & Bachofen, R. (2000). Increased rates of denitrification in nitrogen-treated forest soils. Forest Ecology and Management, 137(1-3), 113-119. https://doi.org/10.1016/S0378-1127(99)00320-5

[167]

Monaghan, R. M., & Barraclough, D. (1993). Nitrous oxide and dinitrogen emissions from urine-affected soil under controlled conditions. Plant and Soil, 151(1), 127-138. https://doi.org/10.1007/BF00010793/METRICS

[168]

Montoya, B. M., DeJong, J. T., & Boulanger, R. W. (2013). Dynamic response of liquefiable sand improved by microbial-induced calcite precipitation. Geotechnique, 63(4), 302-312. https://doi.org/10.1680/GEOT.SIP13.P.019/ASSET/IMAGES/SMALL/GEOT63-0302-F10.GIF

[169]

Moon, H. S., Chang, S. W., Nam, K., Choe, J., & Kim, J. Y. (2006). Effect of reactive media composition and co-contaminants on sulfur-based autotrophic denitrification. Environmental Pollution, 144(3), 802-807. https://doi.org/10.1016/J.ENVPOL.2006.02.020

[170]

Mosier, A. R. (1998). Soil processes and global change. Biology and Fertility of Soils, 27(3), 221-229. https://doi.org/10.1007/S003740050424/METRICS

[171]

Moug, D. M., Sorenson, K. R., Khosravifar, A., Preciado, M., Young, E. S., Paassen, L. van, KavazanjianJr, E., Zhang, B., Stokoe, K. H., Menq, F. M., & Wang, Y. (2022). Field trials of microbially induced desaturation in low-plasticity silt. Journal of Geotechnical and Geoenvironmental Engineering, 148(11), Article 05022005. https://doi.org/10.1061/(ASCE)GT.1943-5606.0002890

[172]

Myers, R. J. K. (1972). The effect of sulphide on nitrate reduction in soil. Plant and Soil, 37(2), 431-433. https://doi.org/10.1007/BF02139987/METRICS

[173]

Nakano, A. (2018). Microbe-induced desaturation of sand using pore pressure development by way of denitrification. Geotechnique Letters, 8(1), 1-4. https://doi.org/10.1680/jgele.17.00039

[174]

Nakano, A. (2023). Effect of soil surface characteristics on denitrification activity and induced calcium carbonate precipitation on the surface. 9th International Congress on Environmental Geotechnics, Chania, Greece. https://doi.org/10.53243/ICEG2023-32.

[175]

Nakano, M., Inagaki, T., Okunishi, S., Tanaka, R., & Maeda, H. (2010). Effect of salinity on denitrification under limited single carbon source by Marinobacter sp. isolated from marine sediment. Journal of Basic Microbiology, 50(3), 285-289. https://doi.org/10.1002/JOBM.200900250

[176]

Nelson, M. B., Martiny, A. C., & Martiny, J. B. H. (2016). Global biogeography of microbial nitrogen-cycling traits in soil. Proceedings of the National Academy of Sciences of the United States of America, 113(29), 8033-8040. https://doi.org/10.1073/PNAS.1601070113/SUPPL_FILE/PNAS.1601070113.SD01.PDF

[177]

Nömmik, H. (1956). Investigations on denitrification in soil. Acta Agriculturae Scandinavica, 6(2), 195-228. https://doi.org/10.1080/00015125609433269/ASSET//CMS/ASSET/1631D8DF-60E3-412D-976B-B0FD99B3E439/00015125609433269.FP.PNG

[178]

Ochoa-Herrera, V., León, G., Banihani, Q., Field, J. A., & Sierra-Alvarez, R. (2011). Toxicity of copper(II) ions to microorganisms in biological wastewater treatment systems. Science of The Total Environment, 412-413, 380-385. https://doi.org/10.1016/J.SCITOTENV.2011.09.072

[179]

O’Donnell, S. T., Hall, C. A., Kavazanjian, E., & Rittmann, B. E. (2019). Biogeochemical model for soil improvement by denitrification. Journal of Geotechnical and Geoenvironmental Engineering, 145(11), https://doi.org/10.1061/(asce)gt.1943-5606.0002126

[180]

O’Donnell, S. T., Kavazanjian, E., & Rittmann, B. E. (2017a). MIDP: Liquefaction mitigation via microbial denitrification as a two-stage process. II: MICP. Journal of Geotechnical and Geoenvironmental Engineering, 143(12), 4017095. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001806

[181]

O’Donnell, S. T., Rittmann, B. E., & Kavazanjian, E. (2017b). MIDP: Liquefaction mitigation via microbial denitrification as a two-stage process. I: Desaturation. Journal of Geotechnical and Geoenvironmental Engineering, 143(12), 4017094. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001818

[182]

Ontiveros-Valencia, A., Ziv-El, M., Zhao, H. P., Feng, L., Rittmann, B. E., & Krajmalnik-Brown, R. (2012). Interactions between nitrate-reducing and sulfate-reducing bacteria coexisting in a hydrogen-fed biofilm. Environmental Science and Technology, 46(20), 11289-11298. https://doi.org/10.1021/ES302370T/SUPPL_FILE/ES302370T_SI_001.PDF

[183]

Overmann, J., Fischer, U., & Pfennig, N. (1992). A new purple sulfur bacterium from saline littoral sediments, Thiorhodovibrio winogradskyi gen. nov. and sp. nov. Archives of Microbiology, 157(4), 329-335. https://doi.org/10.1007/BF00248677/METRICS

[184]

Pakbaz, M. S., Kolahi, A., & Ghezelbash, G. (2022). Assessment of microbial induced calcite precipitation (MICP) in fine sand using native microbes under both aerobic and anaerobic conditions. KSCE Journal of Civil Engineering, 26(3), 1051-1065. https://doi.org/10.1007/s12205-021-0300-x

[185]

Pandey, A., Suter, H., He, J. Z., Hu, H. W., & Chen, D. (2021). Dissimilatory nitrate ammonification and N2 fixation helps maintain nitrogen nutrition in resource-limited rice paddies. Biology and Fertility of Soils, 57(1), 107-115. https://doi.org/10.1007/S00374-020-01508-2/METRICS

[186]

Pang, Y., & Ji, G. (2019). Biotic factors drive distinct DNRA potential rates and contributions in typical Chinese shallow lake sediments. Environmental Pollution, 254, Article 112903. https://doi.org/10.1016/J.ENVPOL.2019.07.071

[187]

Pang, Y., & Wang, J. (2020). Insight into the mechanism of chemoautotrophic denitrification using pyrite (FeS2) as electron donor. Bioresource Technology, 318, Article 124105. https://doi.org/10.1016/J.BIORTECH.2020.124105

[188]

Pang, Y., & Wang, J. (2021). Various electron donors for biological nitrate removal: A review. Science of The Total Environment, 794, Article 148699. https://doi.org/10.1016/J.SCITOTENV.2021.148699

[189]

Pan, Y., She, D., Shi, Z., Cao, T., Xia, Y., & Shan, J. (2023). Salinity and high pH reduce denitrification rates by inhibiting denitrifying gene abundance in a saline-alkali soil. 2023 13:1 Scientific Reports, 13(1), 1-14. https://doi.org/10.1038/s41598-023-29311-7

[190]

Parkin, T. B., Sexstone, A. J., & Tiedje, J. M. (1985). Adaptation of denitrifying populations to low soil pH. Applied and Environmental Microbiology, 49(5), 1053-1056. https://doi.org/10.1128/AEM.49.5.1053-1056.1985

[191]

Payne, W. J. (1973). Reduction of nitrogenous oxides by microorganisms. Bacteriological Reviews, 37(4), 409-452. https://doi.org/10.1128/BR.37.4.409-452.1973/ASSET/4A7FE682-CD56-4481-994C-28284A3DDB62/ASSETS/BR.37.4.409-452.1973.FP.PNG

[192]

Payne, W. J., Riley, P. S., & Cox, C. D. (1971). Separate nitrite, nitric oxide, and nitrous oxide reducing fractions from Pseudomonas perfectomarinus. Journal of Bacteriology, 106(2), 356-361. https://doi.org/10.1128/JB.106.2.356-361.1971

[193]

Pell, M., & Wörman, A. (2008). Biological wastewater treatment systems. Encyclopedia of Ecology, Five-Volume Set, 1-5, 426-441. https://doi.org/10.1016/B978-008045405-4.00317-7

[194]

Pham, V. P., Nakano, A., Heimovaara, T. J., & van Paassen, L. A. (van der Star, W. R. L., 2018a). Applying MICP by denitrification in soils: A process analysis. Environmental Geotechnics, 5(2), 79-93. https://doi.org/10.1680/jenge.15.00078

[195]

Pham, V. P., Van Paassen, L., Nakano, A., Kanayama, M., & Heimovaara, T. (2013). Microbially induced carbonate precipitation (MICP) by denitrification as ground improvement method-Process control in sand column experiments. In Geophysical Research Abstracts, 15.

[196]

Pham, V. P., van Paassen, L. A., van der Star, W. R. L., & Heimovaara, T. J. (2018b). Evaluating strategies to improve process efficiency of denitrification-based MICP. Journal of Geotechnical and Geoenvironmental Engineering, 144(8), 4018049. https://doi.org/10.1061/(asce)gt.1943-5606.0001909

[197]

Philip, G., Wali, A. M. A., & Aref, M. A. M. (1994). On the origin of native sulfur deposits in Gebel El Zeit, Gulf of Suez, Egypt. Carbonates and Evaporites, 9(2), 223-232. https://doi.org/10.1007/BF03175232/METRICS

[198]

Pigeot, L., Dufour, N., Calissano, H., Dermenonville, F., & Soive, A. (2024). Influence of the curing stress effect on the stiffness degradation curve of a silt stabilized with lime and cement. Engineering Geology, 337. https://doi.org/10.1016/j.enggeo.2024.107574

[199]

Pinto, R., Weigelhofer, G., Brito, A. G., & Hein, T. (2021). Effects of dry-wet cycles on nitrous oxide emissions in freshwater sediments: A synthesis. PeerJ, 9, Article e10767. https://doi.org/10.7717/PEERJ.10767/FIG-3

[200]

Poffenbarger, H., Coyne, M. S., & Frye, W. W. (2018). Nitrogen in soils/cycle. Reference Module in Earth Systems and Environmental Sciences. https://doi.org/10.1016/B978-0-12-409548-9.11470-8

[201]

Puppala, A.J., Chittoori, B.C.S., Talluri, N., Le, M., Bheemasetti, T., & Thomey, J. (2013). Stabilizer Selection for Arresting Surficial Slope Failures: A Sustainability Perspective. 1465-1474. https://doi.org/10.1061/9780784412787.147.

[202]

Putz, M., Schleusner, P., Rütting, T., & Hallin, S. (2018). Relative abundance of denitrifying and DNRA bacteria and their activity determine nitrogen retention or loss in agricultural soil. Soil Biology and Biochemistry, 123, 97-104. https://doi.org/10.1016/J.SOILBIO.2018.05.006

[203]

Ray, R. L., Griffin, R. W., Fares, A., Elhassan, A., Awal, R., Woldesenbet, S., & Risch, E. (2020). Soil CO2 emission in response to organic amendments, temperature, and rainfall. 2020 10:1 Scientific Reports, 10(1), 1-14. https://doi.org/10.1038/s41598-020-62267-6

[204]

Ren, Y., Su, J., Wang, Z., & Li, Y. (2023). Hydrogel microbial reactor based on microbially induced calcium precipitation for the removal of calcium, cadmium and nitrate from groundwater. Journal of Environmental Chemical Engineering, 11(3), https://doi.org/10.1016/j.jece.2023.109867

[205]

Ribera-Guardia, A., Kassotaki, E., Gutierrez, O., & Pijuan, M. (2014). Effect of carbon source and competition for electrons on nitrous oxide reduction in a mixed denitrifying microbial community. Process Biochemistry, 49(12), 2228-2234. https://doi.org/10.1016/J.PROCBIO.2014.09.020

[206]

Rich, J. J., Heichen, R. S., Bottomley, P. J., Cromack, K., & Myrold, D. D. (2003). Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils. Applied and Environmental Microbiology, 69(10), 5974-5982. https://doi.org/10.1128/AEM.69.10.5974-5982.2003/ASSET/6DFB3604-3174-4A27-BE39-1EA28C9CD7D4/ASSETS/GRAPHIC/AM1030565005.JPEG

[207]

Robertson, G. P., & Groffman, P. M. (2015). Nitrogen transformations. Soil Microbiology, Ecology and Biochemistry: Third Edition, 421-446. https://doi.org/10.1016/B978-0-12-415955-6.00014-1

[208]

Robertson, L. A., & Kuenen, J. G. (1988). Heterotrophic nitrification in thiosphaera pantotropha: oxygen uptake and enzyme studies. Microbiology, 134(4), 857-863. https://doi.org/10.1099/00221287-134-4-857

[209]

Robinson, D., & Conroy, J. P. (1998). A possible plant-mediated feedback between elevated CO2, denitrification and the enhanced greenhouse effect. Soil Biology and Biochemistry, 31(1), 43-53. https://doi.org/10.1016/S0038-0717(98)00102-3

[210]

Roosa, S., Wauven, C. Vander, Billon, G., Matthijs, S., Wattiez, R., & Gillan, D. C. (2014). The Pseudomonas community in metal-contaminated sediments as revealed by quantitative PCR: a link with metal bioavailability. Research in Microbiology, 165(8), 647-656. https://doi.org/10.1016/J.RESMIC.2014.07.011

[211]

Sacks, L. E., & Barker, H. A. (1952). Substrate oxidation and nitrous oxide utilization in denitrification. Journal of Bacteriology, 64(2), 247-252. https://doi.org/10.1128/JB.64.2.247-252.1952/ASSET/23CB2937-B43B-474B-B382-B8129D97C2AF/ASSETS/JB.64.2.247-252.1952.FP.PNG

[212]

Saghaï A., & Hallin, S. (2024). Diversity and ecology of NrfA-dependent ammonifying microorganisms. Trends in Microbiology, 32(6), 602-613. https://doi.org/10.1016/J.TIM.2024.02.007

[213]

Saghaï A., Pold, G., Jones, C. M., & Hallin, S. (2023). Phyloecology of nitrate ammonifiers and their importance relative to denitrifiers in global terrestrial biomes. 2023 14:1 Nature Communications, 14(1), 1-13. https://doi.org/10.1038/s41467-023-44022-3

[214]

Saleh-Lakha, S., Shannon, K. E., Henderson, S. L., Goyer, C., Trevors, J. T., Zebarth, B. J., & Burton, D. L. (2009). Effect of pH and temperature on denitrification gene expression and activity in Pseudomonas mandelii. Applied and Environmental Microbiology, 75(12), 3903-3911. https://doi.org/10.1128/AEM.00080-09/ASSET/7CE69680-8883-4873-92E0-76BE28255338/ASSETS/GRAPHIC/ZAM0120900150006.JPEG

[215]

Schäffer, A. (2021). Pesticide effects on enzyme activities in the soil ecosystem. Soil Biochemistry, 273-340. https://doi.org/10.1201/9781003208884-8

[216]

Scherer, H. W. (2009). Sulfur in soils. Journal of Plant Nutrition and Soil Science, 172(3), 326-335. https://doi.org/10.1002/JPLN.200900037

[217]

Schimel, J., Balser, T. C., & Wallenstein, M. (2007). Microbial stress-response physiology and its implications for ecosystem function. Ecology, 88(6), 1386-1394. https://doi.org/10.1890/06-0219

[218]

Schlögl, J., Wimmer, B., Cramaro, L., Wirsching, J., Poll, C., Pagel, H., Kandeler, E., Huhn, C., Griebler, C., Stumpp, C., & Haderlein, S. B. (2022). Heavy rainfall following a summer drought stimulates soil redox dynamics and facilitates rapid and deep translocation of glyphosate in floodplain soils. Environmental Science: Processes Impacts, 24(5), 825-838. https://doi.org/10.1039/D1EM00527H

[219]

Schlüter, S., Henjes, S., Zawallich, J., Bergaust, L., Horn, M., Ippisch, O., Vogel, H. J., & Dörsch, P. (2018). Denitrification in soil aggregate analogues-effect of aggregate size and oxygen diffusion. Frontiers in Environmental Science, 6(APR), Article 358214. https://doi.org/10.3389/FENVS.2018.00017/BIBTEX

[220]

Schulz, H. N., & Schulz, H. D. (2005). Large sulfur bacteria and the formation of phosphorite. Science, 307(5708), 416-418. https://doi.org/10.1126/SCIENCE.1103096/SUPPL_FILE/SCHULZ.SOM_EXCELTABLES.ZIP

[221]

Seitzinger, S., Harrison, J. A., Böhlke, J. K., Böhlke, B., Bouwman, A. F., Lowrance, R., Peterson, B., Tobias, C., & Van Drecht, A. G. (2006). DENITRIFICATION ACROSS LANDSCAPES AND WATERSCAPES: A SYNTHESIS. Ecological Applications, 16(6), 2064-2090. https://doi.org/10.1890/1051-0761

[222]

Service, F., & Edwards, P.J. (1998). Sulfur cycling, retention, and mobility in soils: A Review.

[223]

Shao, M. F., Zhang, T., & Fang, H. H. P. (2010). Sulfur-driven autotrophic denitrification: Diversity, biochemistry, and engineering applications. 2010 88:5 Applied Microbiology and Biotechnology, 88(5), 1027-1042. https://doi.org/10.1007/S00253-010-2847-1

[224]

Shapleigh, J. P. (2006). The denitrifying prokaryotes. The Prokaryotes, 769-792. https://doi.org/10.1007/0-387-30742-7_23

[225]

Shen, Z., Zhou, Y., Liu, J., Xiao, Y., Cao, R., & Wu, F. (2015). Enhanced removal of nitrate using starch/PCL blends as solid carbon source in a constructed wetland. Bioresource Technology, 175, 239-244. https://doi.org/10.1016/J.BIORTECH.2014.10.006

[226]

Shukla, S., Rajta, A., Setia, H., & Bhatia, R. (2020). Simultaneous nitrification-denitrification by phosphate accumulating microorganisms. World Journal of Microbiology and Biotechnology, 36(10), 1-17. https://doi.org/10.1007/S11274-020-02926-Y/METRICS

[227]

Šimek, M., & Cooper, J. E. (2002). The influence of soil pH on denitrification: Progress towards the understanding of this interaction over the last 50 years. European Journal of Soil Science, 53(3), 345-354. https://doi.org/10.1046/J.1365-2389.2002.00461.X

[228]

Simon, J., Gross, R., Einsle, O., Kroneck, P. M. H., Kröger, A., & Klimmek, O. (2000). A NapC/NirT-type cytochrome c (NrfH) is the mediator between the quinone pool and the cytochrome c nitrite reductase of Wolinella succinogenes. Molecular Microbiology, 35(3), 686-696. https://doi.org/10.1046/J.1365-2958.2000.01742.X

[229]

Skiba, U., & Ball, B. (2002). The effect of soil texture and soil drainage on emissions of nitric oxide and nitrous oxide. Soil Use and Management, 18(1), 56-60. https://doi.org/10.1111/J.1475-2743.2002.TB00050.X

[230]

Small, N., Sadeghiamirshahidi, M., & Gammons, C. H. (2022). Inorganic precipitation of calcite in mine tailings using trona. Mine Water and the Environment, 41(4), 970-978. https://doi.org/10.1007/s10230-022-00896-1

[231]

Sorensen, J. (1978). Occurrence of nitric and nitrous oxides in a coastal marine sediment. Applied and Environmental Microbiology, 36(6), 809-813. https://doi.org/10.1128/AEM.36.6.809-813.1978

[232]

Sorensen, J., Tiedje, J. M., & Firestone, R. B. (1980). Inhibition by sulfide of nitric and nitrous oxide reduction by denitrifying Pseudomonas fluorescens. Applied and Environmental Microbiology, 39(1), 105-108. https://doi.org/10.1128/AEM.39.1.105-108.1980

[233]

Spaulding, C., Masse, F., & LaBrozzi, J. (2008). Ground Improvement Technologies for a Sustainable World. 891-898. https://doi.org/10.1061/40971(310)111.

[234]

Spiegelman, S. (1947). The dissociation of anaerobic metabolism from enzymatic adaptation in yeast. Journal of Cellular and Comparative Physiology, 30(3), 315-329. https://doi.org/10.1002/JCP.1030300308

[235]

Sreekala, A. G. V., Nair, S., & Nathan, V. K. (2024). Microbially induced calcium carbonate precipitation usingLysinibacillussp.: A ureolytic bacteriumfrom uttarakhand for soil stabilization. Current Microbiology.

[236]

Stal, L. J. (2010). Microphytobenthos as a biogeomorphological force in intertidal sediment stabilization. Ecological Engineering, 36(2), 236-245. https://doi.org/10.1016/J.ECOLENG.2008.12.032

[237]

Stanford, G., Dzienia, S., & Pol, R. A. Vander ( 1975). Effect of temperature on denitrification rate in soils. Soil Science Society of America Journal, 39(5), 867-870. https://doi.org/10.2136/SSSAJ1975.03615995003900050024X

[238]

Stark, J. M., & Firestone, M. K. (1995). Mechanisms for soil moisture effects on activity of nitrifying bacteria. Applied and Environmental Microbiology, 61(1), 218-221. https://doi.org/10.1128/AEM.61.1.218-221.1995

[239]

Stevens, R. J., Laughlin, R. J., & Malone, J. P. (1998). Soil pH affects the processes reducing nitrate to nitrous oxide and di-nitrogen. Soil Biology and Biochemistry, 30(8-9), 1119-1126. https://doi.org/10.1016/S0038-0717(97)00227-7

[240]

Stres, B., Bonete, M. J., Martínez-Espinosa, R. M., Mahne, I., & Bothe, H. (2007). Organisms of the nitrogen cycle under extreme conditions: Low temperature, salinity, pH value and water stress. Biology of the Nitrogen Cycle, 369-379. https://doi.org/10.1016/B978-044452857-5.50025-4

[241]

Su, J., Gao, C., Huang, T., Gao, Y., Bai, X., & He, L. (2019). Characterization and mechanism of the Cd(II) removal by anaerobic denitrification bacterium Pseudomonas sp. H117. Chemosphere, 222, 970-979. https://doi.org/10.1016/J.CHEMOSPHERE.2019.01.192

[242]

Sun, F. yun, Dong, W. yi, Shao, M. fei, Lv, X. mei, Li, J., Peng, L. yu, & Wang, H.jie ( 2013). Aerobic methane oxidation coupled to denitrification in a membrane biofilm reactor: Treatment performance and the effect of oxygen ventilation. Bioresource Technology, 145, 2-9. https://doi.org/10.1016/J.BIORTECH.2013.03.115

[243]

Tam, T.Y., & Knowles, R. (2011). Effects of sulfide and acetylene on nitrous oxide reduction by soil and by Pseudomonas aeruginosa. Https://Doi.Org/10.1139/M79-176, 25(10), 1133-1138. https://doi.org/10.1139/M79-176.

[244]

Terry, R. E., & Duxbury, J. M. (1985). Acetylene decomposition in soils. Soil Science Society of America Journal, 49(1), 90-94. https://doi.org/10.2136/SSSAJ1985.03615995004900010018X

[245]

Tourney, J., & Ngwenya, B. T. (2009). Bacterial extracellular polymeric substances (EPS) mediate CaCO3 morphology and polymorphism. Chemical Geology, 262(3-4), 138-146. https://doi.org/10.1016/J.CHEMGEO.2009.01.006

[246]

Trinh, D. A., Luu, T. N. M., Trinh, Q. H., Tran, H. S., Tran, T. M., Le, T. P. Q., Duong, T. T., Orange, D., Janeau, J. L., Pommier, T., & Rochelle-Newall, E. (2016). Impact of terrestrial runoff on organic matter, trophic state, and phytoplankton in a tropical, upland reservoir. Aquatic Sciences, 78(2), 367-379. https://doi.org/10.1007/S00027-015-0439-Y/METRICS

[247]

Tu, Y. J., Luo, P. C., Li, Y. L., Liu, J., Sun, T. T., Li, G. J., & Duan, Y. P. (2023). Seasonal heavy metal speciation in sediment and source tracking via Cu isotopic composition in Huangpu River, Shanghai, China. Ecotoxicology and Environmental Safety, 260, Article 115068. https://doi.org/10.1016/J.ECOENV.2023.115068

[248]

Usyskin-Tonne, A., Hadar, Y., Yermiyahu, U., & Minz, D. (2020). Elevated CO2 has a significant impact on denitrifying bacterial community in wheat roots. Soil Biology and Biochemistry, 142, Article 107697. https://doi.org/10.1016/J.SOILBIO.2019.107697

[249]

van den Berg, E. M., Elisário, M. P., Kuenen, J. G., Kleerebezem, R., & van Loosdrecht, M. C. M. ( 2017a). Fermentative bacteria influence the competition between denitrifiers and DNRA bacteria. Frontiers in Microbiology, 8(SEP), Article 281187. https://doi.org/10.3389/FMICB.2017.01684/BIBTEX

[250]

van den Berg, E. M., Rombouts, J. L., Kuenen, J. G., Kleerebezem, R., & van Loosdrecht, M. C. M. ( 2017b). Role of nitrite in the competition between denitrification and DNRA in a chemostat enrichment culture. AMB Express, 7(1), 91. https://doi.org/10.1186/S13568-017-0398-X

[251]

van Paassen, L. A., Daza, C. M., Staal, M., Sorokin, D. Y., van der Zon, W., & van Loosdrecht, M. C. M. (2010). Potential soil reinforcement by biological denitrification. Ecological Engineering, 36(2), 168-175. https://doi.org/10.1016/j.ecoleng.2009.03.026

[252]

Waldrop, M. P., & Firestone, M. K. (2006). Seasonal dynamics of microbial community composition and function in oak canopy and open grassland soils. Microbial Ecology, 52(3), 470-479. https://doi.org/10.1007/S00248-006-9100-6/TABLES/4

[253]

Wallenstein, M. D., Myrold, D. D., Firestone, M., & Voytek, M. (2006). Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecological Applications, 16(6), 2143-2152. https://doi.org/10.1890/1051-0761(2006)016

[254]

Wallenstein, M. D., & Vilgalys, R. J. (2005). Quantitative analyses of nitrogen cycling genes in soils. Pedobiologia, 49(6), 665-672. https://doi.org/10.1016/J.PEDOBI.2005.05.005

[255]

Wang, D., Xu, S., Jiang, C., Wang, X., Yang, D., Kuai, B., & Zhuang, X. (2023). The effects, mechanisms, and applications of sulfide as both an inhibitor and electron donor in novel biological nitrogen removal process. Science of The Total Environment, 894, Article 164784. https://doi.org/10.1016/J.SCITOTENV.2023.164784

[256]

Wang, H., Gilbert, J. A., Zhu, Y., & Yang, X. (2018). Salinity is a key factor driving the nitrogen cycling in the mangrove sediment. Science of The Total Environment, 631-632, 1342-1349. https://doi.org/10.1016/J.SCITOTENV.2018.03.102

[257]

Wang, H., Guo, C. L., Yang, C. F., Lu, G. N., Chen, M. Q., & Dang, Z. (2016b). Distribution and diversity of bacterial communities and sulphate-reducing bacteria in a paddy soil irrigated with acid mine drainage. Journal of Applied Microbiology, 121(1), 196-206. https://doi.org/10.1111/JAM.13143

[258]

Wang, L., Van Paassen, L., Gao, Y., He, J., Gao, Y., & Kim, D. (2021). Laboratory tests on mitigation of soil liquefaction using microbial induced desaturation and precipitation. Geotechnical Testing Journal, 44(2), 520-534. https://doi.org/10.1520/GTJ20190432

[259]

Wang, S., Liu, C., Wang, X., Yuan, D., & Zhu, G. (2020). Dissimilatory nitrate reduction to ammonium (DNRA) in traditional municipal wastewater treatment plants in China: Widespread but low contribution. Water Research, 179, Article 115877. https://doi.org/10.1016/J.WATRES.2020.115877

[260]

Wang, S., Zhao, J., Ding, X., Zhao, R., Huang, T., Lan, L.,Naim Bin Nasry, A., Al, & Liu, S. ( 2019). Effect of starvation time on NO and N2O production during heterotrophic denitrification with nitrite and glucose shock loading. Process Biochemistry, 86, 108-116. https://doi.org/10.1016/J.PROCBIO.2019.07.023

[261]

Wang, X., Wang, Z., Su, J., Li, X., Wen, G., & Li, X. (2024). Simultaneous removal of calcium, phosphorus, and bisphenol A from industrial wastewater by Stutzerimonas sp. ZW5 via microbially induced calcium precipitation (MICP): Kinetics, mechanism, and stress response. Journal of Hazardous Materials, 473. https://doi.org/10.1016/j.jhazmat.2024.134700

[262]

Wang, Y., Chen, H., Liu, Y. X., Ren, R. P., & Lv, Y. K. (2015). Effect of temperature, salinity, heavy metals, ammonium concentration, pH and dissolved oxygen on ammonium removal by an aerobic nitrifier. RSC Advances, 5(97), 79988-79996. https://doi.org/10.1039/C5RA13318A

[263]

Wang, Z., Vishwanathan, N., Kowaliczko, S., & Ishii, S. (2023). Clarifying microbial nitrous oxide reduction under aerobic conditions: Tolerant, intolerant, and sensitive. Microbiology Spectrum, 11(2), https://doi.org/10.1128/SPECTRUM.04709-22/SUPPL_FILE/REVIEWER-COMMENTS.PDF

[264]

Wan, R., Chen, Y., Zheng, X., Su, Y., & Li, M. (2016). Effect of CO2 on microbial denitrification via inhibiting electron transport and consumption. Environmental Science and Technology, 50(18), 9915-9922. https://doi.org/10.1021/ACS.EST.5B05850/ASSET/IMAGES/LARGE/ES-2015-058503_0006.JPEG

[265]

Wan, R., Wang, L., Chen, Y., Zheng, X., Su, Y., & Tao, X. (2018). Insight into a direct carbon dioxide effect on denitrification and denitrifying bacterial communities in estuarine sediment. Science of The Total Environment, 643, 1074-1083. https://doi.org/10.1016/J.SCITOTENV.2018.06.279

[266]

Wang, Z. Bin, Miao, M. S., Kong, Q., & Ni, S. Q. (2016a). Evaluation of microbial diversity of activated sludge in a municipal wastewater treatment plant of northern China by high-throughput sequencing technology. Desalination and Water Treatment, 57(50), 23516-23521. https://doi.org/10.1080/19443994.2015.1137232

[267]

Warneke, S., Schipper, L. A., Matiasek, M. G., Scow, K. M., Cameron, S., Bruesewitz, D. A., & McDonald, I. R. (2011). Nitrate removal, communities of denitrifiers and adverse effects in different carbon substrates for use in denitrification beds. Water Research, 45(17), 5463-5475. https://doi.org/10.1016/J.WATRES.2011.08.007

[268]

Watanabe, I., & de Guzman, M. R. (1980). Effect of nitrate on acetylene disappearance from anaerobic soil. Soil Biology and Biochemistry, 12(2), 193-194. https://doi.org/10.1016/0038-0717(80)90058-9

[269]

Wei, B., Xu, J., Fu, Q., Qin, Q., Bai, Y., Sun, C.,... Ke, W. (2021a). Effect of sulfate-reducing bacteria on corrosion of X80 pipeline steel under disbonded coating in a red soil solution. Journal of Materials Science Technology, 87, 1-17. https://doi.org/10.1016/J.JMST.2020.12.076

[270]

Wei, L., Xu, Q., Wang, S., Wang, C., & Chen, J. (2019). Development of transparent cemented soil for geotechnical laboratory modelling. Engineering Geology, 262. https://doi.org/10.1016/j.enggeo.2019.105354

[271]

Wei, M. Z., Liu, J. W., Yang, Q. Z., Xue, A., Wu, H., Ni, J. R., Winter, L. R., Elimelech, M., & Zhao, H. Z. (2022). Denitrification mechanism in oxygen-rich aquatic environments through long-distance electron transfer. 2022 5:1 Npj Clean Water, 5(1), 1-9. https://doi.org/10.1038/s41545-022-00205-x

[272]

Wei, R., Hui, C., Zhang, Y., Xu, L., Zhao, Y., Du, L., & Jiang, H. (2021b). Response of heterotrophic nitrification-aerobic denitrification bacterium Pseudomonas aeruginosa P-1 to Cd2+ and Pb2+ on ammonium removal performance, physiology, and transcriptome analysis. International Biodeterioration Biodegradation, 165, Article 105326. https://doi.org/10.1016/J.IBIOD.2021.105326

[273]

Wijler, J., & Delwiche, C. C. (1954). Investigations on the denitrifying process in soil. Plant and Soil, 5(2), 155-169. https://doi.org/10.1007/BF01343848/METRICS

[274]

Wind, T., & Conrad, R. (1995). Sulfur compounds, potential turnover of sulfate and thiosulfate, and numbers of sulfate-reducing bacteria in planted and unplanted paddy soil. FEMS Microbiology Ecology, 18(4), 257-266. https://doi.org/10.1111/J.1574-6941.1995.TB00182.X

[275]

Wołejko, E., Jabłońska-Trypuć A., Wydro, U., Butarewicz, A., & Łozowicka, B. (2020). Soil biological activity as an indicator of soil pollution with pesticides - A review. Applied Soil Ecology, 147, Article 103356. https://doi.org/10.1016/J.APSOIL.2019.09.006

[276]

Wollersheim, R., Trolldenier, G., & Beringer, H. (1987). Effect of bulk density and soil water tension on denitrification in the rhizosphere of spring wheat (Triticum vulgare). Biology and Fertility of Soils, 5(3), 181-187. https://doi.org/10.1007/BF00256898/METRICS

[277]

Wolsing, M., & Priemé A. (2004). Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments. FEMS Microbiology Ecology, 48(2), 261-271. https://doi.org/10.1016/J.FEMSEC.2004.02.002

[278]

W. Rassam, D.,S. Fellows, C., Hayr, R., De, Hunter, H., & Bloesch, P. ( 2006). The hydrology of riparian buffer zones; two case studies in an ephemeral and a perennial stream. Journal of Hydrology, 325(1-4), 308-324. https://doi.org/10.1016/J.JHYDROL.2005.10.023

[279]

Wu, J., Yin, Y., & Wang, J. (2018). Hydrogen-based membrane biofilm reactors for nitrate removal from water and wastewater. International Journal of Hydrogen Energy, 43(1), 1-15. https://doi.org/10.1016/J.IJHYDENE.2017.10.178

[280]

Wu, W., Yang, F., & Yang, L. (2012). Biological denitrification with a novel biodegradable polymer as carbon source and biofilm carrier. Bioresource Technology, 118, 136-140. https://doi.org/10.1016/J.BIORTECH.2012.04.066

[281]

Wu, W., Yang, L., & Wang, J. (2013). Denitrification using PBS as carbon source and biofilm support in a packed-bed bioreactor. Environmental Science and Pollution Research, 20(1), 333-339. https://doi.org/10.1007/S11356-012-0926-9/FIGURES/5

[282]

Wu, Z., Su, J., Ali, A., Hu, X., & Wang, Z. (2021). Study on the simultaneous removal of fluoride, heavy metals and nitrate by calcium precipitating strain Acinetobacter sp. H12. Journal of Hazardous Materials, 405, Article 124255. https://doi.org/10.1016/J.JHAZMAT.2020.124255

[283]

Xiang, J., Qiu, J., Yuan, J., Fu, H., Yang, Y., & Gu, X. (2022). Study on denitrifying biogrout to immobilize heavy metals in bottom ash in an anaerobic environment and its immobilization mechanism. Journal of Environmental Chemical Engineering, 10(3), https://doi.org/10.1016/j.jece.2022.108084

[284]

Xue, M., Nie, Y., Cao, X., & Zhou, X. (2022). Deciphering the influence of S/N ratio in a sulfite-driven autotrophic denitrification reactor. Science of The Total Environment, 836, Article 155612. https://doi.org/10.1016/J.SCITOTENV.2022.155612

[285]

Xu, Z., Dai, X., & Chai, X. (2018). Effect of different carbon sources on denitrification performance, microbial community structure and denitrification genes. Science of The Total Environment, 634, 195-204. https://doi.org/10.1016/J.SCITOTENV.2018.03.348

[286]

Yang, L., Wang, X. H., Cui, S., Ren, Y. X., Yu, J., Chen, N., Xiao, Q., Guo, L. K., & Wang, R. H. (2019). Simultaneous removal of nitrogen and phosphorous by heterotrophic nitrification-aerobic denitrification of a metal resistant bacterium Pseudomonas putida strain NP5. Bioresource Technology, 285, Article 121360. https://doi.org/10.1016/J.BIORTECH.2019.121360

[287]

Yang, Q., Shi, Y., Xin, Y., Yang, T., Zhang, L., Gu, Z., Li, Y., Ding, Z., & Shi, G. (2023). Insight into the cold adaptation mechanism of an aerobic denitrifying bacterium: Bacillus simplex H-b. Applied and Environmental Microbiology, 89(2), Article e01928-22. https://doi.org/10.1128/AEM.01928-22

[288]

Yang, W., Xu, L., Wang, Z., Li, K., Hu, R., Su, J., & Zhang, L. (2022). Synchronous removal of ammonia nitrogen, phosphate, and calcium by heterotrophic nitrifying strain Pseudomonas sp. Y1 based on microbial induced calcium precipitation. Bioresource Technology, 363. https://doi.org/10.1016/j.biortech.2022.127996

[289]

Ye, R. W., Averill, B. A., & Tiedje, J. M. (1994). Denitrification: Production and consumption of nitric oxide. Applied and Environmental Microbiology, 60(4), 1053-1058.

[290]

Ying, Z., Benahmed, N., Cui, Y. J., & Duc, M. (2022). Wetting-drying cycle effect on the compressibility of lime-treated soil accounting for wetting fluid nature and aggregate size. Engineering Geology, 307. https://doi.org/10.1016/j.enggeo.2022.106778

[291]

Yoshinari, T., & Knowles, R. (1976). Acetylene inhibition of nitrous oxide reduction by denitrifying bacteria. Biochemical and Biophysical Research Communications, 69(3), 705-710. https://doi.org/10.1016/0006-291X(76)90932-3

[292]

Zeng, C., Van Paassen, L. A., Zheng, J. jie, Stallings Young, E. G., Hall, C. A., Veenis, Y., Konstantinou, M., Van der Star, W. R. L., & Kavazanjian, E. (2022). Soil stabilization with microbially induced desaturation and precipitation (MIDP) by denitrification: A field study. 2022 17:12 Acta Geotechnica, 17(12), 5359-5374. https://doi.org/10.1007/S11440-022-01721-3

[293]

Zeng, W. Z., Xu, C., Wu, J. W., Huang, J. S., & Ma, T. (2013). Effect of salinity on soil respiration and nitrogen dynamics. Ecological Chemistry and Engineering S, 20(3), 519-530. https://doi.org/10.2478/ECES-2013-0039

[294]

Zhang, J., Zhou, A., Liu, Y., Zhao, B., Luan, Y., Wang, S., Yue, X., & Li, Z. (2017). Microbial network of the carbonate precipitation process induced by microbial consortia and the potential application to crack healing in concrete. 2018 7:1 Scientific Reports, 7(1), 1-10. https://doi.org/10.1038/s41598-017-15177-z

[295]

Zhang, L., Su, J., Liu, S., Huang, T., Wang, Z., Liu, Y., Hou, C., & Wang, X. (2024). Calcium self-release bioremediation system combined with microbially induced calcium precipitation for the removal of ammonium nitrogen, phosphorus and heavy metals. Journal of Environmental Chemical Engineering, 12(6), https://doi.org/10.1016/j.jece.2024.114190

[296]

Zhang, N., Chen, H., Lyu, Y., & Wang, Y. (2019). Nitrogen removal by a metal-resistant bacterium, Pseudomonas putida ZN1, capable of heterotrophic nitrification-aerobic denitrification. Journal of Chemical Technology Biotechnology, 94(4), 1165-1175. https://doi.org/10.1002/JCTB.5863

[297]

Zhang, Q., Ji, F., & Xu, X. (2016). Effects of physicochemical properties of poly-ε-caprolactone on nitrate removal efficiency during solid-phase denitrification. Chemical Engineering Journal, 283, 604-613. https://doi.org/10.1016/J.CEJ.2015.07.085

[298]

Zhang, Q., Liu, S., Yang, C., Chen, F., & Lu, S. (2014). Bioreactor consisting of pressurized aeration and dissolved air flotation for domestic wastewater treatment. Separation and Purification Technology, 138, 186-190. https://doi.org/10.1016/J.SEPPUR.2014.10.024

[299]

Zhang, Z., Gao, Q., Xie, Z., Yang, J., & Liu, J. (2020). Adsorption of nitrification inhibitor nitrapyrin by humic acid and fulvic acid in black soil: characteristics and mechanism. RSC Advances, 11(1), 114-123. https://doi.org/10.1039/D0RA08714A

[300]

Zhao, S., Su, X., Wang, Y., Yang, X., Bi, M., He, Q., & Chen, Y. (2020). Copper oxide nanoparticles inhibited denitrifying enzymes and electron transport system activities to influence soil denitrification and N2O emission. Chemosphere, 245, Article 125394. https://doi.org/10.1016/J.CHEMOSPHERE.2019.125394

[301]

Zhao, Y., Bu, C., Yang, H., Qiao, Z., Ding, S., & Ni, S. Q. (2020). Survey of dissimilatory nitrate reduction to ammonium microbial community at national wetland of Shanghai, China. Chemosphere, 250, Article 126195. https://doi.org/10.1016/J.CHEMOSPHERE.2020.126195

[302]

Zhu, T., & Dittrich, M. (2016). Carbonate precipitation through microbial activities in natural environment, and their potential in biotechnology: A review. Frontiers in Bioengineering and Biotechnology, 4(JAN), Article 179892. https://doi.org/10.3389/FBIOE.2016.00004/BIBTEX

[303]

Zhu, X., Chen, Y., Chen, H., Li, X., Peng, Y., & Wang, S. (2013). Minimizing nitrous oxide in biological nutrient removal from municipal wastewater by controlling copper ion concentrations. Applied Microbiology and Biotechnology, 97(3), 1325-1334. https://doi.org/10.1007/S00253-012-3988-1/TABLES/3

[304]

Zhu, X., Liu, W., Chen, J., Bruijnzeel, L. A., Mao, Z., Yang, X., Cardinael, R., Meng, F.-R., Sidle, R. C., Seitz, S., Nair, V. D., Nanko, K., Zou, X., Chen, C., Jiang, X. J., Zhu, X., Liu, W., Chen, J., Yang, X., & Nanko, K. (2019). Reductions in water, soil and nutrient losses and pesticide pollution in agroforestry practices: a review of evidence and processes. 2019 453:1 Plant and Soil, 453(1), 45-86. https://doi.org/10.1007/S11104-019-04377-3

[305]

Zumft, W. G. (1997). Cell biology and molecular basis of denitrification. Microbiology and Molecular Biology Reviews, 61(4), 533-616. https://doi.org/10.1128/MMBR.61.4.533-616.1997

[306]

Zuo, F., Yue, W., Gui, S., Sui, Q., & Wei, Y. (2023). Resilience of anammox application from sidestream to mainstream: A combined system coupling denitrification, partial nitritation and partial denitrification with anammox. Bioresource Technology, 374, Article 128783. https://doi.org/10.1016/J.BIORTECH.2023.128783

PDF (4027KB)

88

Accesses

0

Citation

Detail

Sections
Recommended

/