Architecture characterization of orchard trees for mechanical behavior investigations

Min Kyung Jeon , Matthew Burrall , Tae Hyuk Kwon , Jason T. DeJong , Alejandro Martinez

Biogeotechnics ›› 2025, Vol. 3 ›› Issue (2) : 100138

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Biogeotechnics ›› 2025, Vol. 3 ›› Issue (2) :100138 DOI: 10.1016/j.bgtech.2024.100138
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Architecture characterization of orchard trees for mechanical behavior investigations

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Abstract

Characterizing the architecture of tree root systems is essential to advance the development of root-inspired anchorage in engineered systems. This study explores the structural root architectures of orchard trees to understand the interplays between the mechanical behavior of roots and the root architecture. Full three-dimensional (3D) models of natural tree root systems, Lovell, Marianna, and Myrobalan, that were extracted from the ground by vertical pullout are reconstructed through photogrammetry and later skeletonized as nodes and root branch segments. Combined analyses of the full 3D models and skeletonized models enable a detailed examination of basic bulk properties and quantification of architectural parameters. While the root segments are divided into three categories, trunk root, main lateral root, and remaining roots, the patterns in branching and diameter distributions show significant differences between the trunk and main laterals versus the remaining lateral roots. In general, the branching angle decreases over the sequence of bifurcations. The main lateral roots near the trunk show significant spreading while the lateral roots near the ends grow roughly parallel to the parent root. For branch length, the roots bifurcate more frequently near the trunk and later they grow longer. Local thickness analysis confirms that the root diameter decays at a higher rate near the trunk than in the remaining lateral roots, while the total cross-sectional area across a bifurcation node remains mostly conserved. The histograms of branc;/.hing angle, and branch length and thickness gradient can be described using lognormal and exponential distributions, respectively. This unique study presents data to characterize mechanically important structural roots, which may help link root architecture to the mechanical behaviors of root structures.

Keywords

Bio-inspired foundation / Root architecture / 3D root model / Skeleton / Statistical variation / Mechanical pullout test

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Min Kyung Jeon, Matthew Burrall, Tae Hyuk Kwon, Jason T. DeJong, Alejandro Martinez. Architecture characterization of orchard trees for mechanical behavior investigations. Biogeotechnics, 2025, 3(2): 100138 DOI:10.1016/j.bgtech.2024.100138

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Funding

This research was supported by the National Research Foundation of Korea (NRF) grant funded by the Korean government (MSIT) (RS-2024- 00340851) and the Engineering Research Center Program of the National Science Foundation (NSF) under NSF Cooperative Agreement EEC-1449501. Any opinions, findings and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect those of the NSF.

CRediT authorship contribution statement

Min-Kyung Jeon: Writing - review & editing, Writing - original draft, Validation, Methodology, Investigation, Formal analysis, Data curation. Matthew Burrall: Writing - review & editing, Visualization, Validation, Software, Resources, Methodology, Investigation, Formal analysis, Data curation, Conceptualization. Tae-Hyuk Kwon: Writing - review & editing, Validation, Supervision, Resources, Project administration, Investigation, Funding acquisition, Conceptualization. Jason DeJong: Writing - review & editing, Writing - original draft, Visualization, Supervision, Resources, Project administration, Methodology, Funding acquisition, Conceptualization. Alejandro Martinez: Writing - review & editing, Writing - original draft, Supervision, Resources, Investigation, Funding acquisition.

Declaration of Competing Interest

Alejandro Martinez is the Associate Editor of Biogeotechnics, Jason T. DeJong is an Editorial Board Member of Biogeotechnics, they were not involved in the editorial review or the decision to publish this article. The other authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

References

[1]

A, A. (2022). Mesh voxelisation. Retrieved from https://www.mathworks.com/matlabcentral/fileexchange/27390-mesh-voxelisation.https://www.mathworks.com/matlabcentral/fileexchange/27390-mesh-voxelisation.

[2]

Agisoft, L. (2020). Metashape python reference. Release, 1(0), 1-199.

[3]

Berntson, G. (1994). Modelling root architecture: are there tradeoffs between efficiency and potential of resource acquisition? New Phytologist, 127(3), 483-493. https://doi.org/10.1111/j.1469-8137.1994.tb03966.x.

[4]

Böhm, W. (1979). Root ecology and root physiology. 1-1In methods of studying root systems. Springer.

[5]

Burrall, M., DeJong, J. T., Martinez, A., & Wilson, D. W. (2020). Vertical pullout tests of orchard trees for bio-inspired engineering of anchorage and foundation systems. Bioinspiration & Biomimetics, 16(1), Article 016009. https://doi.org/10.1088/1748-3190/abb414.

[6]

Chaturvedi, O., & Das, D. (2002). Studies on rooting patterns of 5-year-old important agroforestry tree species in North Bihar, India. Forests, Trees and Livelihoods, 12( 4), 329-339. https://doi.org/10.1080/14728028.2002.9752436.

[7]

Collet, C., Löf, M., & Pagès, L. (2006). Root system development of oak seedlings analysed using an architectural model. Effects of competition with grass. Plant and Soil, 279(1), 367-383. https://doi.org/10.1007/s11104-005-2419-9.

[8]

Coutts, M. (1983). Root architecture and tree stability. Tree Root Systems and Their Mycorrhizas. Springer171-188. https://doi.org/10.1007/978-94-009-6833-2_18.

[9]

Danjon, F., Fourcaud, T., & Bert, D. (2005). Root architecture and wind‐firmness of mature Pinus pinaster. New Phytologist, 168(2), 387-400. https://doi.org/10.1111/j.1469-8137.2005.01497.x.

[10]

Danjon, F., Khuder, H., & Stokes, A. (2013). Deep phenotyping of coarse root architecture in R. pseudoacacia reveals that tree root system plasticity is confined within its architectural model. PloS one, 8(12), Article e83548. https://doi.org/10.1371/journal.pone.0083548.

[11]

Danjon, F., & Reubens, B. (2008). Assessing and analyzing 3D architecture of woody root systems, a review of methods and applications in tree and soil stability, resource acquisition and allocation. Plant and Soil, 303(1), 1-34. https://doi.org/10.1007/s11104-007-9470-7.

[12]

Danquechin Dorval, A., Meredieu, C., & Danjon, F. (2016). Anchorage failure of young trees in sandy soils is prevented by a rigid central part of the root system with various designs. Annals of botany, 118(4), 747-762. https://doi.org/10.1093/aob/mcw098.

[13]

Diggle, A. (1988). ROOTMAP—a model in three-dimensional coordinates of the growth and structure of fibrous root systems. Plant and Soil, 105(2), 169-178. https://doi.org/10.1007/BF02376780.

[14]

Draye, X. (2002). Consequences of root growth kinetics and vascular structure on the distribution of lateral roots. Plant, Cell & Environment, 25(11), 1463-1474. https://doi.org/10.1046/j.0016-8025.2002.00924.x.

[15]

Dumroese, R. K., Terzaghi, M., Chiatante, D., Scippa, G. S., Lasserre, B., & Montagnoli, A. (2019). Functional traits of Pinus ponderosa coarse roots in response to slope conditions. Frontiers in Plant Science, 10, 947. https://doi.org/10.3389/fpls.2019.00947.

[16]

Danjon, F., Bert, D., Godin, C., & Trichet, P. (1999). Structural root architecture of 5-year- old Pinus pinaster measured by 3D digitising and analysed with AMAPmod. Plant and Soil, 217(1), 49-63. https://doi.org/10.1023/A:1004686119796

[17]

Dupuy, L., Fourcaud, T., & Stokes, A. (2005). A Numerical Investigation into the Influence of Soil Type and Root Architecture on Tree Anchorage. Plant and Soil, 278(1), 119-134. https://doi.org/10.1007/s11104-005-7577-2

[18]

Dupuy, L., Gregory, P. J., & Bengough, A. G. (2010). Root growth models: towards a new generation of continuous approaches. Journal of experimental botany, 61(8), 2131-2143. https://doi.org/10.1093/jxb/erp389.

[19]

Eshel, A. (1998). On the fractal dimensions of a root system. Plant, Cell & Environment, 21(2), 247-251. https://doi.org/10.1046/j.1365-3040.1998.00252.x.

[20]

Dupuy, L., Fourcaud, T., Lac, P., & Stokes, A. (2003). Modelling the influence of morphological and mechanical properties on the anchorage of root systems. In:Proceedings of the International Conference Wind Effect on Trees, Karlsruhe.

[21]

Eshel, A., Beeckman, T. (2013). Plant roots: the hidden half: CRC press.

[22]

Fan, C. C., & Chen Y.W (2010). The effect of root architecture on the shearing resistance of root-permeated soils. Ecological Engineering, 36(6), 813-826. https://doi.org/10.1016/j.ecoleng.2010.03.003.

[23]

Fitter, A. (1987). An architectural approach to the comparative ecology of plant root systems. New phytologist, 106, 61-77. https://doi.org/10.1111/j.1469-8137.1987.tb04683.x.

[24]

Fitter, A. (2002). Characteristics and functions of root systems. In Plant Roots (3rd Edition ed). CRC Press49-78.

[25]

Herrero-Huerta, M., Meline, V., Iyer-Pascuzzi, A. S., Souza, A. M., Tuinstra, M. R., & Yang, Y. (2021). 4D Structural root architecture modeling from digital twins by X-Ray Computed Tomography. Plant methods, 17(1), 1-12. https://doi.org/10.1186/s13007-021-00819-1.

[26]

Hildebrand, T., & Rüegsegger, P. (1997). A new method for the model‐independent assessment of thickness in three‐dimensional images. Journal of Microscopy, 185(1), 67-75. https://doi.org/10.1046/j.1365-2818.1997.1340694.x.

[27]

Hudek, C., Sturrock, C., Atkinson, B., Stanchi, S., & Freppaz, M. (2017). Root morphology and biomechanical characteristics of high altitude alpine plant species and their potential application in soil stabilization. Ecological Engineering, 109, 228-239. https://doi.org/10.1016/j.ecoleng.2017.05.048.

[28]

Khuder, H., Stokes, A., Danjon, F., Gouskou, K., & Lagane, F. (2007). Is it possible to manipulate root anchorage in young trees? Plant and soil, 294(1), 87-102.

[29]

Landl, M., Huber, K., Schnepf, A., Vanderborght, J., Javaux, M., Glyn Bengough, A., & Vereecken, H. (2017). A new model for root growth in soil with macropores. Plant and Soil, 415(1), 99-116. https://doi.org/10.1007/s11104-016-3144-2.

[30]

Landl, M., Schnepf, A., Vanderborght, J., Bengough, A. G., Bauke, S. L., Lobet, G., & Vereecken, H. (2018). Measuring root system traits of wheat in 2D images to parameterize 3D root architecture models. Plant and Soil, 425(1), 457-477. https://doi.org/10.1007/s11104-018-3595-8.

[31]

Lecompte, F., & Pagès, L. (2007). Apical diameter and branching density affect lateral root elongation rates in banana. Environmental and Experimental Botany, 59(3), 243-251. https://doi.org/10.1016/j.envexpbot.2006.01.002.

[32]

Leitner, D., Klepsch, S., Bodner, G., & Schnepf, A. (2010). A dynamic root system growth model based on L-Systems. Plant and Soil, 332(1), 177-192. https://doi.org/10.1007/s11104-010-0284-7.

[33]

Li, Y., Wang, Y., Ma, C., Zhang, H., Wang, Y., Song, S., & Zhu, J. (2016). Influence of the spatial layout of plant roots on slope stability. Ecological Engineering, 91, 477-486. https://doi.org/10.1016/j.ecoleng.2016.02.026.

[34]

Lynch, J. P., Nielsen, K. L., Davis, R. D., & Jablokow, A. G. (1997). SimRoot: modelling and visualization of root systems. Plant and Soil, 188(1), 139-151. https://doi.org/10.1023/A:1004276724310

[35]

Mairhofer, S., Zappala, S., Tracy, S., Sturrock, C., Bennett, M. J., Mooney, S. J., & Pridmore, T. P. (2013). Recovering complete plant root system architectures from soil via X-ray μ-computed tomography. Plant methods, 9(1), 1-7. https://doi.org/10.1186/1746-4811-9-8.

[36]

Martinez, A., Dejong, J., Akin, I., Aleali, A., Arson, C., Atkinson, J., & Boulanger, R. (2022). Bio- inspired geotechnical engineering: principles, current work, opportunities and challenges. Géotechnique, 72(8), 687-705. https://doi.org/10.1680/jgeot.20.P.170.

[37]

McNeel, R. (2017). Rhinoceros 5 [software program]. Seattle, WA, USA: Robert McNeel & Associates.

[38]

Oppelt, A. L., Kurth, W., & Godbold, D. L. (2001). Topology, scaling relations and Leonardo's rule in root systems from African tree species. Tree Physiology, 21(2-3), 117-128.

[39]

Pagès, L., Xie, J., & Serra, V. (2013). Potential and actual root growth variations in root systems: modeling them with a two-step stochastic approach. Plant and Soil, 373(1), 723-735. https://doi.org/10.1007/s11104-013-1820-z.

[40]

Reubens, B., Poesen, J., Danjon, F., Geudens, G., & Muys, B. (2007). The role of fine and coarse roots in shallow slope stability and soil erosion control with a focus on root system architecture: a review. Trees, 21(4), 385-402. https://doi.org/10.1007/s00468-007-0132-4.

[41]

Saint Cast, C., Meredieu, C., Défossez, P., & Danjon, F. (2019). Modelling root system development for anchorage of forest trees up to the mature stage, including acclimation to soil constraints: the case of Pinus pinaster. Plant and Soil, 439(1), 405-430. https://doi.org/10.1007/s11104-019-04039-4.

[42]

Saint Cast, C., Meredieu, C., Défossez, P., & Danjon, F. (2020). Clustering of Pinus pinaster coarse roots, from juvenile to mature stage. Plant and Soil, 457(1), 185-205.

[43]

Spek, L. Y. (1997). Generation and visualization of root-like structures in a three-dimensional space. Plant and Soil, 197(1), 9-18. https://doi.org/10.1023/A:1004236626479

[44]

Tardío, G., González-Ollauri, A., & Mickovski, S. B. (2016). A non-invasive preferential root distribution analysis methodology from a slope stability approach. Ecological Engineering, 97, 46-57.

[45]

Tobin, B., Čermák, J., Chiatante, D., Danjon, F., Di Iorio, A., Dupuy, L., & Laiho, R. (2007). Towards developmental modelling of tree root systems. Plant Biosystems, 141(3), 481-501. https://doi.org/10.1080/11263500701626283.

[46]

van Noordwijk, M., Spek, L. Y., & de Willigen, P. (1994). Proximal root diameter as predictor of total root size for fractal branching models. Plant and Soil, 164(1), 107-117. https://doi.org/10.1007/BF00010117.

[47]

Vannoppen, W., De Baets, S., Keeble, J., Dong, Y., & Poesen, J. (2017). How do root and soil characteristics affect the erosion-reducing potential of plant species? Ecological Engineering, 109, 186-195.

[48]

Vercambre, G., Drouet, J.-L., Lecompte, F., Collet, C., & Le Bot, J. (2004). Root Typ: a generic model to depict and analyse the root system architecture. Plant and Soil, 258(1), 103-119. https://doi.org/10.1023/B:PLSO.0000016540.47134.03

[49]

Vogt, K., Persson, H., Lassoie, J., & Hinckley, T. (1991). Techniques and approaches in forest tree ecophysiology. Root Methods. Boca Raton, Florida: CRC Press Inc.

[50]

Zeng, D., Li, M., Jiang, N., Ju, Y., Schreiber, H., Chambers, E., & Topp, C. N. (2021). TopoRoot: a method for computing hierarchy and fine-grained traits of maize roots from 3D imaging. Plant methods, 17(1), 1-17. https://doi.org/10.1186/s13007-021-00829-z.

[51]

Zhang, W., Huang, R., Xiang, J., & Zhang, N. (2024). Recent advances in bio-inspired geotechnics: From burrowing strategy to underground structures. Gondwana Research, 130, 1-17. https://doi.org/10.1016/j.gr.2023.12.018.

[52]

Zhang, X., Knappett, J., Leung, A., Ciantia, M., Liang, T., & Danjon, F. (2020). Small-scale modelling of root-soil interaction of trees under lateral loads. Plant and Soil, 456(1), 289-305.

[53]

Zhang, X., Knappett, J. A., Leung, A. K., Ciantia, M. O., Liang, T., & Nicoll, B. C. (2022). Centrifuge modelling of root-soil interaction of laterally loaded trees under different loading conditions. Géotechnique, 1-15. https://doi.org/10.1680/jgeot.21.00088.

[54]

Oppelt, A. L., Kurth, W., Dzierzon, H., Jentschke, G., & Godbold, D. L. (2000). Structure and fractal dimensions of root systems of four co-occurring fruit tree species from Botswana. Annals of Forest Science, 57(5), 463-475. https://doi.org/10.1051/forest:2000135

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