Fertilizer or pollutant: analyzing the effects of biochar on soil organisms using machine learning

Yucan Dong , Merve Tunali , Bernd Nowack

Biochar ›› 2026, Vol. 8 ›› Issue (1) : 28

PDF
Biochar ›› 2026, Vol. 8 ›› Issue (1) :28 DOI: 10.1007/s42773-025-00528-1
Original Research
research-article

Fertilizer or pollutant: analyzing the effects of biochar on soil organisms using machine learning

Author information +
History +
PDF

Abstract

In the context of carbon neutrality targets, biochar is widely promoted as a soil amendment to sequester organic carbon in soils. Although a wealth of research has illustrated the benefits of biochar to plants, its potential toxicity to soil fauna and microbes requires serious consideration. The aim of this study was to perform a meta-analysis of experimental data on biochar effects (i.e. percentage change in endpoints after biochar application compared to the control group) on plants, animals, and microorganisms. The experimental data were extracted from 61 papers and consists of 1329 data points. In a next step, machine learning was used to develop a classifier to predict, whether biochar has positive or negative consequences on soil organisms based on biochar and soil properties. The meta-analysis shows that the effect of biochar is negatively correlated with the biochar application rate, biochar pH, pyrolysis temperature, and soil pH. A random forest classifier was then developed to classify whether biochar was “beneficial” or “hazardous” based on four types of descriptors: biochar properties, soil properties, test organism, and endpoint type. The accuracy of the best model achieved an R2 of 0.79. In the next step, a quantitative model was developed to predict the effect with an R2 of 0.48. The model is of great significance for understanding the role of biochar in soil and improving the quality control strategy for biochar production.

Keywords

Biochar / Soil / Machine learning / Toxic effects / Beneficial effects

Cite this article

Download citation ▾
Yucan Dong, Merve Tunali, Bernd Nowack. Fertilizer or pollutant: analyzing the effects of biochar on soil organisms using machine learning. Biochar, 2026, 8(1): 28 DOI:10.1007/s42773-025-00528-1

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Alburquerque JA, Calero JM, Barrón V, Torrent J, del Campillo MC, Gallardo A, Villar R. Effects of biochars produced from different feedstocks on soil properties and sunflower growth. J Plant Nutr Soil Sci, 2014, 177(1): 16-25

[2]

Allaire JJ, Chollet F (2023)- keras: R Interface to “Keras.” https://CRAN.R-project.org/package=keras

[3]

Bai SH, Omidvar N, Gallart M, Kämper W, Tahmasbian I, Farrar MB, Singh K, Zhou G, Muqadass B, Xu C-Y. Combined effects of biochar and fertilizer applications on yield: a review and meta-analysis. Sci Total Environ, 2022, 808 152073

[4]

Baronti S, Alberti G, Delle Vedove G, Di Gennaro F, Fellet G, Genesio L, Miglietta F, Peressotti A, Vaccari FP. The biochar option to improve plant yields: first results from some field and pot experiments in Italy. Ital J Agron, 2010, 5(1): 3-12

[5]

Bidyuk P, Kalinina I, Gozhyj A (2022) An Approach to Identifying and Filling Data Gaps in Machine Learning Procedures. Lecture Notes in Computational Intelligence and Decision Making: 2021 International Scientific Conference" Intellectual Systems of Decision-Making and Problems of Computational Intelligence”, Proceedings, 164–176.

[6]

Brtnicky M, Datta R, Holatko J, Bielska L, Gusiatin ZM, Kucerik J, Hammerschmiedt T, Danish S, Radziemska M, Mravcova L. A critical review of the possible adverse effects of biochar in the soil environment. Sci Total Environ, 2021, 796 148756

[7]

Canty A, Ripley BD (2022) boot: Bootstrap R (S-Plus) Functions.

[8]

Case SDC, McNamara NP, Reay DS, Whitaker J. The effect of biochar addition on N2O and CO2 emissions from a sandy loam soil–the role of soil aeration. Soil Biol Biochem, 2012, 51: 125-134

[9]

Chen W, Meng J, Han X, Lan Y, Zhang W. Past, present, and future of biochar. Biochar, 2019, 1: 75-87

[10]

Chen S, Teng Y, Luo Y, Kuramae E, Ren W. Threats to the soil microbiome from nanomaterials: a global meta and machine-learning analysis. Soil Biol Biochem, 2024, 188 109248

[11]

Crombie K, Mašek O, Cross A, Sohi S. Biochar–synergies and trade-offs between soil enhancing properties and C sequestration potential. Gcb Bioenergy, 2015, 7(5): 1161-1175

[12]

Cui J, Jiang J, Chang E, Zhang F, Guo L, Fang D, Xu R, Wang Y. Underlying reasons and factors associated with changes in earthworm activities in response to biochar amendment: a review. Biochar, 2023, 5(1): 79

[13]

Dai Y, Zheng H, Jiang Z, Xing B. Combined effects of biochar properties and soil conditions on plant growth: a meta-analysis. Sci Total Environ, 2020, 713 136635

[14]

Deb D, Kloft M, Lässig J, Walsh S. Variable effects of biochar and P solubilizing microbes on crop productivity in different soil conditions. Agroecol Sustain Food Syst, 2016, 402145-168

[15]

Farhangi-Abriz S, Torabian S, Qin R, Noulas C, Lu Y, Gao S. Biochar effects on yield of cereal and legume crops using meta-analysis. Sci Total Environ, 2021, 775 145869

[16]

Gao Y, Shao G, Yang Z, Zhang K, Lu J, Wang Z, Wu S, Xu D. Influences of soil and biochar properties and amount of biochar and fertilizer on the performance of biochar in improving plant photosynthetic rate: a meta-analysis. Eur J Agron, 2021, 130 126345

[17]

Hagemann N, Spokas K, Schmidt H-P, Kägi R, Böhler MA, Bucheli TD. Activated carbon, biochar and charcoal: linkages and synergies across pyrogenic carbon’s ABC s. Water, 2018, 10(2): 182

[18]

Hilber I, Bastos AC, Loureiro S, Soja G, Marsz A, Cornelissen G, Bucheli TD. The different faces of biochar: contamination risk versus remediation tool. J Environ Eng Landsc Manage, 2017, 25286-104

[19]

Huwaldt JA, Steinhorst S (2015) Plot Digitizer, version 2.6. 8. Computer Software].*.

[20]

Initiative IB (n.d.). Standardized product definition and product testing guidelines for biochar that is used in soil, international biochar initiative. 2015.

[21]

Jones DL, Rousk J, Edwards-Jones G, DeLuca TH, Murphy DV. Biochar-mediated changes in soil quality and plant growth in a three year field trial. Soil Biol Biochem, 2012, 45: 113-124

[22]

Lehmann J, Joseph S. Biochar for environmental management: science, technology and implementation, 2015Routledge

[23]

Li MY, Sun WJ. Water retention behaviour of biochar-amended clay and its influencing mechanism. Rock Soil Mechan, 2019, 40(12): 4722

[24]

Li X, Wang T, Chang SX, Jiang X, Song Y. Biochar increases soil microbial biomass but has variable effects on microbial diversity: a meta-analysis. Sci Total Environ, 2020, 749 141593

[25]

Liaw, A., & Wiener, M. (2002). Classification and Regression by randomForest. R News, 2(3), 18–22. https://CRAN.R-project.org/doc/Rnews/

[26]

Liesch AM., Weyers SL, Gaskin JW, Das KC (2010) Impact of two different biochars on earthworm growth and survival. Annals of Environmental Science.

[27]

Liu X, Zhang A, Ji C, Joseph S, Bian R, Li L, Pan G, Paz-Ferreiro J. Biochar’s effect on crop productivity and the dependence on experimental conditions—a meta-analysis of literature data. Plant Soil, 2013, 373: 583-594

[28]

Liu S, Zhang Y, Zong Y, Hu Z, Wu S, Zhou JIE, Jin Y, Zou J. Response of soil carbon dioxide fluxes, soil organic carbon and microbial biomass carbon to biochar amendment: a meta-analysis. Gcb Bioenergy, 2016, 8(2): 392-406

[29]

Lu T, Yuan H, Wang Y, Huang H, Chen Y. Characteristic of heavy metals in biochar derived from sewage sludge. J Mater Cycles Waste Manag, 2016, 18: 725-733

[30]

Luo Y, Hui D, Zhang D. Elevated CO2 stimulates net accumulations of carbon and nitrogen in land ecosystems: a meta-analysis. Ecology, 2006, 87(1): 53-63

[31]

Malev O, Contin M, Licen S, Barbieri P, De Nobili M. Bioaccumulation of polycyclic aromatic hydrocarbons and survival of earthworms (Eisenia andrei) exposed to biochar amended soils. Environ Sci Pollut Res Int, 2016, 23: 3491-3502

[32]

Mao J, Zhang K, Chen B. Linking hydrophobicity of biochar to the water repellency and water holding capacity of biochar-amended soil. Environ Pollut, 2019, 253: 779-789

[33]

Meng J, He T, Sanganyado E, Lan Y, Zhang W, Han X, Chen W. Development of the straw biochar returning concept in China. Biochar, 2019, 1: 139-149

[34]

Meyer D, Dimitriadou E, Hornik K, Weingessel A, Leisch F (2023) e1071: Misc functions of the department of statistics, probability theory group (Formerly: E1071), TU Wien. https://CRAN.R-project.org/package=e1071

[35]

Mierzwa-Hersztek M, Gondek K, Klimkowicz-Pawlas A, Baran A, Bajda T. Sewage sludge biochars management—ecotoxicity, mobility of heavy metals, and soil microbial biomass. Environ Toxicol Chem, 2018, 37(4): 1197-1207

[36]

Molnár M, Vaszita E, Farkas É, Ujaczki É, Fekete-Kertész I, Tolner M, Klebercz O, Kirchkeszner C, Gruiz K, Uzinger N. Acidic sandy soil improvement with biochar—a microcosm study. Sci Total Environ, 2016, 563: 855-865

[37]

Noguera D, Rondón M, Laossi K-R, Hoyos V, Lavelle P, de Carvalho MHC, Barot S. Contrasted effect of biochar and earthworms on rice growth and resource allocation in different soils. Soil Biol Biochem, 2010, 42(7): 1017-1027

[38]

Paluszynska A, Biecek P, Jiang Y (2020) randomForestExplainer: explaining and Visualizing Random Forests in Terms of Variable Importance. https://CRAN.R-project.org/package=randomForestExplainer

[39]

Pawar A, Panwar NL. Analysis of biochar from carbonisation of wheat straw using continuous auger reactor. Int J Environ Sustain Dev, 2022, 21(1–2): 218-225

[40]

Reichle E. Characterisation of charcoal concerning organic and inorganic substances-comparative values to discuss" biochar". Gefahrstoffe Reinhalt Luft, 2015, 75(5): 176-181

[41]

Rigatti SJ. Random forest. J Insur Med, 2017, 47(1): 31-39

[42]

Toková L, Igaz D, Horák J, Aydin E. Effect of biochar application and re-application on soil bulk density, porosity, saturated hydraulic conductivity, water content and soil water availability in a silty loam Haplic Luvisol. Agronomy, 2020, 10(7): 1005

[43]

Tomczyk A, Sokołowska Z, Boguta P. Biochar physicochemical properties: pyrolysis temperature and feedstock kind effects. Rev Environ Sci Bio/technol, 2020, 19: 191-215

[44]

Uzoma KC, Inoue M, Andry H, Fujimaki H, Zahoor A, Nishihara E. Effect of cow manure biochar on maize productivity under sandy soil condition. Soil Use Manage, 2011, 27(2): 205-212

[45]

Venables, W. N., & Ripley, B. D. (2002). Modern Applied Statistics with S (Fourth). Springer. https://www.stats.ox.ac.uk/pub/MASS4/

[46]

Yang T, Meng J, Jeyakumar P, Cao T, Liu Z, He T, Cao X, Chen W, Wang H. Effect of pyrolysis temperature on the bioavailability of heavy metals in rice straw-derived biochar. Environ Sci Pollut Res, 2021, 28: 2198-2208

[47]

Zhang L, Jing Y, Xiang Y, Zhang R, Lu H. Responses of soil microbial community structure changes and activities to biochar addition: a meta-analysis. Sci Total Environ, 2018, 643: 926-935

[48]

Zhang F, Wang Z, Peijnenburg WJGM, Vijver MG. Machine learning-driven QSAR models for predicting the mixture toxicity of nanoparticles. Environ Int, 2023, 177 108025

[49]

Zhou Z, Tang X, Dai W, Shi J, Chen H. Nano-QSAR models for predicting cytotoxicity of metal oxide nanoparticles (MONPs) to E. coli. Can J Chem, 2017, 95(8): 863-866

[50]

Zhou Y, Wang Y, Peijnenburg W, Vijver MG, Balraadjsing S, Fan W. Using machine learning to predict adverse effects of metallic nanomaterials to various aquatic organisms. Environ Sci Technol, 2023, 57(46): 17786-17795

RIGHTS & PERMISSIONS

The Author(s)

PDF

8

Accesses

0

Citation

Detail

Sections
Recommended

/