Screening and identification of significant media components using Plackett–Burman design for enhanced extracellular protease production by Bacillus sp. MTCC 511 under mutagenic stress conditions

Amarish Kumar Sharma , Ajay Kumar , Manoj Kumar Jena

Bioresources and Bioprocessing ›› 2026, Vol. 13 ›› Issue (1) : 145

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Bioresources and Bioprocessing ›› 2026, Vol. 13 ›› Issue (1) :145 DOI: 10.1186/s40643-026-01134-0
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Screening and identification of significant media components using Plackett–Burman design for enhanced extracellular protease production by Bacillus sp. MTCC 511 under mutagenic stress conditions
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Abstract

Background

Statistical screening of media components is essential for identifying the key variables that govern protease yield from Bacillus species. We used a 12-run Plackett–Burman Design (PBD) to screen ten independent variables—dipotassium phosphate, monopotassium phosphate, ammonium sulphate, sodium nitrate, magnesium sulphate heptahydrate, calcium chloride, carbon source, nitrogen source, agitation speed, and pH—for their effects on extracellular protease production by Bacillus sp. MTCC 511 under four mutagenic stress conditions: thermal treatment at 70 °C and 80 °C (10 min each) and UV irradiation (2 and 3 min).

Results

Enzyme activity was quantified by Folin–Ciocalteu assay against a tyrosine standard (R2 = 0.998). The highest protease activity, 8.66 U/mL, was recorded under 3-min UV irradiation in a medium containing starch (1%), yeast extract (0.1%), K2HPO4 (0.05 M), KH2PO4 (0.05 M), (NH4)2SO4 (0.05 M), NaNO3 (0.1 M), MgSO4·7H2O (0.002 M), and CaCl2 (0.002 M) at pH 9 and 120 rpm, representing a 20.6-fold improvement over the unsupplemented basal medium. ANOVA showed R2 > 97% for the 70 °C, 80 °C, and UV-3 min models; the UV-2 min model was statistically inadequate (R2 = 56.52%). Pareto analysis pointed to agitation speed, NaNO3, MgSO4·7H2O, and carbon source as the most influential factors. Pearson correlation between thermal and UV-3 min responses (r = 0.72–0.83) is consistent with previously described σB-dependent stress–response pathways.

Conclusions

The PBD screening efficiently identified significant factors whose effects are consistent with established regulatory mechanisms including nitrogen catabolite repression, carbon catabolite repression, and dissolved oxygen-dependent secretion. Follow-up response surface optimization is warranted to characterize factor interactions and identify the global optimum.

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Keywords

Extracellular protease / Bacillus sp. / Plackett–Burman design / Factor screening / Bioprocess engineering / Mutagenesis

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Amarish Kumar Sharma, Ajay Kumar, Manoj Kumar Jena. Screening and identification of significant media components using Plackett–Burman design for enhanced extracellular protease production by Bacillus sp. MTCC 511 under mutagenic stress conditions. Bioresources and Bioprocessing, 2026, 13 (1) : 145 DOI:10.1186/s40643-026-01134-0

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References

[1]

Ahmed I, Irfan M, Nadeem M, Zia MA, Ahmad BM, Iqbal HMN. Optimization of media and environmental conditions for alkaline protease production using Bacillus subtilis in submerged fermentation process. IJAVMS, 2010, 4: 105-113

[2]

Akel H, Al-Quadan F, Yousef TK. Characterization of a purified thermostable protease from hyperthermophilic Bacillus strain HUTBS71. Eur J Sci Res, 2009, 31: 280-288

[3]

Anwar A, Saleemuddin M. Alkaline proteases: a review. Bioresour Technol, 1998, 64: 175-183.

[4]

Beg QK, Sahai V, Gupta R. Statistical media optimization and alkaline protease production from Bacillus mojavensis in a bioreactor. Process Biochem, 2003, 39: 203-209.

[5]

Boominadhan U, Rajakumar R, Sivakumaar PKV, Joe MM. Optimization of protease enzyme production using Bacillus sp. isolated from different wastes. Bot Res Int, 2009, 2: 83-87

[6]

Das G, Prasad MP. Isolation, purification and mass production of protease enzyme from Bacillus subtilis. Int Res J Microbiol, 2010, 1: 26-31

[7]

Deutscher J. The mechanisms of carbon catabolite repression in bacteria. Curr Opin Microbiol, 2008, 11: 87-93.

[8]

Durham DR, Stewart DB, Stellwag EJ. Novel alkaline and heat-stable serine proteases from alkalophilic Bacillus sp. strain GX6638. J Bacteriol, 1987, 169: 2762-2768.

[9]

Emon TH, Hakim A, Chakraborthy D, Miah MF, Azad AK. Enhanced production of dehairing alkaline protease from Bacillus subtilis mutant E29 by consolidated bioprocessing using response surface modelling. Biomass Conv Bioref, 2024, 14: 19501-19517.

[10]

Gupta R, Beg QK, Lorenz P. Bacterial alkaline proteases: molecular approaches and industrial applications. Appl Microbiol Biotechnol, 2002, 59: 15-32.

[11]

Gurumallesh P, Alagu K, Ramakrishnan B, Muthusamy S. A systematic reconsideration on proteases. Int J Biol Macromol, 2019, 128: 254-267.

[12]

Haldenwang WG. The sigma factors of Bacillus subtilis. Microbiol Rev, 1995, 59: 1-30.

[13]

Huang Q, Peng Y, Li X, Wang H, Zhang Y. Purification and characterization of an extracellular alkaline serine protease with dehairing function from Bacillus pumilus. Curr Microbiol, 2003, 46: 169-173.

[14]

Joo HS, Kumar CG, Park GC, Kim KT, Paik SR, Chang CS. Optimization of the production of an extracellular alkaline protease from Bacillus horikoshii. Process Biochem, 2002, 38: 155-159.

[15]

Kaur S, Vohra RM, Kapoor M, Beg QK, Hoondal GS. Enhanced production and characterization of a highly thermostable alkaline protease from Bacillus sp. P-2. World J Microbiol Biotechnol., 2001, 17: 125-129.

[16]

Kumar CG, Takagi H. Microbial alkaline proteases: from a bioindustrial viewpoint. Biotechnol Adv, 1999, 17: 561-594.

[17]

Msadek T, Dartois V, Kunst F, Herbaud ML, Rapoport G. ClpP of Bacillus subtilis is required for competence development, motility, degradative enzyme synthesis, growth at high temperature and sporulation. Mol Microbiol, 1998, 27: 899-914.

[18]

Msadek T, Dartois V, Kunst F, Herbaud ML, Rapoport G. ClpP of Bacillus subtilis is required for competence, motility, degradative enzyme synthesis. Mol Microbiol, 1998, 27: 899-914.

[19]

Nadeem M, Qazi JI, Baig S, Syed Q. Studies on commercially important alkaline protease from Bacillus licheniformis N-2 isolated from decaying organic soil. Turk J Biochem, 2007, 32: 171-177

[20]

Navaneeth S, Bhuvanesh S, Bhaskar V, Kumar PV, Kandaswamy SKJ, Achary A. Optimization of medium for the production of subtilisin from Bacillus subtilis MTCC 441. Afr J Biotechnol, 2009, 8: 6327-6331.

[21]

Patel R, Dodia M, Singh SP. Extracellular alkaline protease from a newly isolated haloalkaliphilic Bacillus sp.: production and optimization. Process Biochem, 2005, 40: 3569-3575.

[22]

Prakasham RS, Subba Rao C, Sarma PN. Green gram husk—an inexpensive substrate for alkaline protease production by Bacillus sp. in solid-state fermentation. Bioresour Technol, 2006, 97: 1449-1454.

[23]

Qureshi AS, Bhutto MA, Khushk I, Dahot MU. Optimization of cultural conditions for protease production by Bacillus subtilis EFRL 01. Afr J Biotechnol, 2011, 10: 5173-5181

[24]

Rao MB, Tanksale AM, Ghatge MS, Deshpande VV. Molecular and biotechnological aspects of microbial proteases. Microbiol Mol Biol Rev, 1998, 62: 597-635.

[25]

Romsomsaa N, Chim-anagae P, Jangchud A. Optimization of silk degumming protease production from Bacillus subtilis C4 using Plackett–Burman design and response surface methodology. ScienceAsia, 2010, 36: 118-124.

[26]

Saxena R, Singh R. Statistical optimization of conditions for protease production from Bacillus sp. Acta Biol Szeged, 2010, 54: 135-141

[27]

Shafee N, Aris SN, Abd Rahman RNZ, Basri M, Salleh AB. Optimization of environmental and nutritional conditions for the production of alkaline protease by Bacillus cereus strain 146. J Appl Sci Res, 2005, 1: 1-8

[28]

Strauch MA, Hoch JA. Transition-state regulators: sentinels of Bacillus subtilis post-exponential gene expression. Mol Microbiol, 1993, 7: 337-342.

[29]

Uyar F, Porsuk I, Kizil G, Yilmaz EI. Optimal conditions for production of extracellular protease from newly isolated Bacillus cereus strain CA15. EurAsia J BioSci, 2011, 5: 1-9.

[30]

Völker A, Engelmann S, Ondrey G, Hecker M. Analysis of the induction of general stress proteins of Bacillus subtilis. Microbiology, 1994, 140: 741-752.

[31]

Zhang Y, Hu J, Zhang Q, Cai D, Chen S, Wang Y. Enhancement of alkaline protease production in recombinant Bacillus licheniformis by response surface methodology. Bioresour Bioprocess, 2023, 10: 27.

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