Temperature-associated microbial succession and volatile flavor compound dynamics during cigar tobacco leaf fermentation

Tianfei Zheng , Dongfeng Guo , Yaqi Shi , Jinlong Zhou , Cunyong Zhang , Kun Zong , Shaoxuan Ju , Xingjiang Li

Bioresources and Bioprocessing ›› 2026, Vol. 13 ›› Issue (1) : 86

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Bioresources and Bioprocessing ›› 2026, Vol. 13 ›› Issue (1) :86 DOI: 10.1186/s40643-026-01060-1
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Temperature-associated microbial succession and volatile flavor compound dynamics during cigar tobacco leaf fermentation
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Abstract

Temperature is a key factor driving microbial community succession and volatile flavor compound formation during the fermentation of cigar tobacco leaves (CTLs). This study systematically investigated microbial community dynamics, co-occurrence networks, and volatile flavor compound (VFCs) profiles of CTLs from Dominica and Yunnan under a 20–60 °C fermentation gradient. High-throughput sequencing identified Staphylococcus, Oceanobacillus, and thermophilic fungi as core microbes potentially associated with aroma formation. Dominica CTLs exhibiting higher microbial diversity than Yunnan CTLs. Dominica CTLs produced abundant esters, alcohols and ketones across different temperature stages, whereas Yunnan CTLs accumulated more pyrazines, indole and terpenoids at high temperatures (≥ 50 °C). Co-occurrence network analysis revealed temperature-driven shifts in microbial interactions: Dominica CTLs formed balanced networks with mixed positive/negative correlations at low temperatures, while Yunnan CTLs developed stable networks dominated by positive correlations at high temperatures. PERMANOVA indicated significant differences in microbial community structure among temperature gradients (R2 = 0.78, p < 0.001). Spearman correlation analysis suggested that core microbes (e.g., Staphylococcus) were significantly correlated with the accumulation of key VFCs (e.g., esters, alcohols). These findings propose a conceptual temperature–microbe–VFC interaction framework, providing theoretical support for optimizing CTL fermentation processes.

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Keywords

Cigar tobacco leaves / Fermentation temperature / Microbial network / Community succession / Volatile flavor compounds

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Tianfei Zheng, Dongfeng Guo, Yaqi Shi, Jinlong Zhou, Cunyong Zhang, Kun Zong, Shaoxuan Ju, Xingjiang Li. Temperature-associated microbial succession and volatile flavor compound dynamics during cigar tobacco leaf fermentation. Bioresources and Bioprocessing, 2026, 13 (1) : 86 DOI:10.1186/s40643-026-01060-1

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References

[1]

Banerjee S, Schlaeppi K, van der Heijden MGA. Keystone taxa as drivers of microbiome structure and functioning. Nat Rev Microbiol, 2018, 16: 567-576.

[2]

Bolyen E, Rideout JR, Dillon MR, et al.. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol, 2019, 37: 852-857.

[3]

Callahan BJ, McMurdie PJ, Rosen MJ, et al.. DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods, 2016, 13: 581-583.

[4]

Cai W, Zhang Q, Zhu P, et al.. Study on dynamic changes and correlations of microbial diversity, key enzyme activity and conventional components in tobacco leaves during the aging process. Bioresour Bioprocess, 2025, 12. ArticleID: 130

[5]

Egbune EO, Ezedom T, Odeghe OB, et al.. Solid-state fermentation production of L-lysine by Corynebacterium glutamicum (ATCC 13032) using agricultural by-products as substrate. World J Microbiol Biotechnol, 2023, 40. ArticleID: 20

[6]

Gao Y, Wang Y, Hou B, et al.. Diversity of microbial communities in cigar filler leaves with different initial water contents analyzed based on high-throughput sequencing technology. Front Microbiol, 2025, 16. ArticleID: 1508866

[7]

Geib E, Baldeweg F, Doerfer M, et al.. Cross-chemistry leads to product diversity from Atromentin synthetases in Aspergilli from section Nigri. Cell Chem Biol, 2019, 26: 223-234.e6.

[8]

Gutbrod K, Romer J, Dörmann P. Phytol metabolism in plants. Prog Lipid Res, 2019, 74: 1-17.

[9]

Han X, Ma T, Wu Y, et al.. Assessment of wheat Qu fermented at medium and high temperatures: effects of Bupleurum addition on fermentation characteristics, volatile profiles, and microbial communities. Food Res Int, 2025, 203. ArticleID: 115814

[10]

Han P, Guo D, Zhang M, et al.. Integrated multi-omics reveals microbial and metabolic mechanisms driving enhanced fermentation quality in cigar tobacco leaves with exogenous additives. Bioresour Bioprocess, 2026, 13. ArticleID: 2

[11]

Jia Y, Guo S, Hu W, et al.. Effects of different fermentation temperatures on microbiomes of cigar tobacco leaves. Front Bioeng Biotechnol, 2025, 13. ArticleID: 1550383

[12]

Jousset A, Bienhold C, Chatzinotas A, et al.. Where less may be more: how the rare biosphere pulls ecosystems strings. ISME J, 2017, 11: 853-862.

[13]

Kind T, Wohlgemuth G, Lee DY, et al.. FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry. Anal Chem, 2009, 81: 10038-10048.

[14]

Knapp BD, Willis L, Gonzalez C, et al.. Metabolic rearrangement enables adaptation of microbial growth rate to temperature shifts. Nat Microbiol, 2025, 10: 185-201.

[15]

Lalko J, Lapczynski A, McGinty D, et al.. Fragrance material review on trans-beta-ionone. Food Chem Toxicol, 2007, 45(Suppl 1): S248-S250.

[16]

Leonhardt RH, Berger RG. Nootkatone. Adv Biochem Eng Biotechnol, 2015, 148: 391-404.

[17]

Liu X, Quan W. Progress on the synthesis pathways and pharmacological effects of naturally occurring pyrazines. Molecules, 2024, 29. ArticleID: 3597

[18]

Lynch MDJ, Neufeld JD. Ecology and exploration of the rare biosphere. Nat Rev Microbiol, 2015, 13: 217-229.

[19]

Ma L, Wang Y, Wang X, et al.. Solid-state fermentation improves tobacco leaves quality via the screened Bacillus subtilis of simultaneously degrading starch and protein ability. Appl Biochem Biotechnol, 2024, 196: 506-521.

[20]

Mahmoud E, Hayallah AM, Kovacic S, et al.. Recent progress in biologically active indole hybrids: a mini review. Pharmacol Rep, 2022, 74: 570-582.

[21]

Nazipi S, Vangkilde-Pedersen SG, Busck MM, et al.. An antimicrobial Staphylococcus sciuri with broad temperature and salt spectrum isolated from the surface of the African social spider, Stegodyphus dumicola. Antonie Van Leeuwenhoek, 2021, 114: 325-335.

[22]

Omaiye EE, Luo W, McWhirter KJ, Pankow JF, et al.. Flavour chemicals, synthetic coolants and pulegone in popular mint-flavoured and menthol-flavoured e-cigarettes. Tob Control, 2022, 31: e3-e9.

[23]

Oña L, Shreekar SK, Kost C. Disentangling microbial interaction networks. Trends Microbiol, 2025, 33: 619-634.

[24]

Qu FF, Li XH, Wang PQ, et al.. Effect of thermal process on the key aroma components of green tea with chestnut-like aroma. J Sci Food Agric, 2023, 103: 657-665.

[25]

Ren M, Qin Y, Zhang L, et al.. Effects of fermentation chamber temperature on microbes and quality of cigar wrapper tobacco leaves. Appl Microbiol Biotechnol, 2023, 107: 6469-6485.

[26]

Saishu N, Morimoto K, Yamasato H, et al.. Characterization of Aerococcus viridans isolated from milk samples from cows with mastitis and manure samples. J Vet Med Sci, 2015, 77: 1037-1042.

[27]

Shade A, Jones SE, Caporaso JG, et al.. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. Mbio, 2014, 5. ArticleID: e01371–e01371

[28]

Shan XJ, Jin L, Li F, et al.. Isolation of indigenous Bacillus velezensis from aging tobacco leaves for improving the flavor of flue-cured tobacco. Front Microbiol, 2025, 16. ArticleID: 1623279

[29]

Song B, Li Y, Yu Z, Jin J, et al.. Changes in enzyme activity, structure and growth strategies of the rhizosphere microbiome influenced by elevated temperature and CO₂. Sci Total Environ, 2024, 954. ArticleID: 176522

[30]

Srinivasan S, Jnana A, Murali TS. Modeling microbial community networks: methods and tools for studying microbial interactions. Microb Ecol, 2024, 87: 56.

[31]

Takahashi Y, Horiyama S, Honda C, et al.. A chemical approach to searching for bioactive ingredients in cigarette smoke. Chem Pharm Bull (Tokyo), 2013, 61: 85-89.

[32]

Vala V, Suhagia T, Raina V, et al.. Thermostable amylases from thermophilic microbes: advances in production, engineering, and industrial applications. Nanotechnology, 2025.

[33]

Wei J, Song K, Zang Z, et al.. Influence of specific tobacco endophytic Bacillus on tobacco leaf quality enhancement during fermentation. Front Microbiol, 2024, 15. ArticleID: 1468492

[34]

Wei W, Li Y, Huang T. Using machine learning methods to study colorectal cancer tumor micro-environment and its biomarkers. Int J Mol Sci, 2023, 24: 11133.

[35]

Wieder C, Simon-Sánchez C, Liermann J, et al.. Allantofuranone biosynthesis and precursor-directed mutasynthesis of hydroxylated analogues. J Nat Prod, 2025, 88: 1191-1200.

[36]

Wu X, Hu Y, Wang Q, et al.. Study on the correlation between the dominant microflora and the main flavor substances in the fermentation process of cigar tobacco leaves. Front Microbiol, 2023, 14. ArticleID: 1267447

[37]

Wu Q, Duan X, Tang D, et al.. Foliar microbiota confers deeper color of fermented cigar wrapper under additional fermented bacteria. Bioresour Bioprocess, 2025, 12: 78.

[38]

Yang D, Kato H, Kawatsu K, et al.. Reconstruction of a soil microbial network induced by stress temperature. Microbiol Spectr, 2022, 10. ArticleID: e0274822

[39]

Yang L, Fan W, Xu Y. Effects of storage period and season on the microecological characteristics of high-temperature Daqu. Food Res Int, 2024, 196. ArticleID: 115034

[40]

Yu C, Li M, Zhang B, et al.. Hydrothermal pretreatment contributes to accelerate maturity during the composting of lignocellulosic solid wastes. Bioresour Technol, 2022, 346. ArticleID: 126587

[41]

Yu Y, Yang Y, Jia T, et al.. Changes in microbial composition during flue-cured tobacco aging and their effects on chemical composition: a review. Bioresour Bioprocess, 2025, 12: 71.

[42]

Zhang G, He Y, Yang W, et al.. Integrated microbiology and metabolomics analysis reveal the fermentation process and the flavor development in cigar tobacco leaf. Microbiol Spectr, 2025, 13. ArticleID: e0102924

[43]

Zhang G, Zhao L, Li W, et al.. Changes in physicochemical properties and microbial community succession during leaf stacking fermentation. AMB Express, 2023, 13. ArticleID: 132

[44]

Zhang Q, Huang Y, An H, et al.. The impact of gradient variable temperature fermentation on the quality of cigar tobacco leaves. Front Microbiol, 2024, 15. ArticleID: 1433656

[45]

Zhang Q, Kong G, Zhao G, et al.. Microbial and enzymatic changes in cigar tobacco leaves during air-curing and fermentation. Appl Microbiol Biotechnol, 2023, 107: 5789-5801.

[46]

Zhang Y, Lin B, Hao Y, et al.. Two-stage inoculation with lignocellulose-degrading microorganisms in composting: enhanced humification efficiency and underlying mechanisms. Environ Res, 2024, 271. ArticleID: 120906

[47]

Zheng T, Zhang Q, Li P, et al.. Analysis of microbial community, volatile flavor compounds, and flavor of cigar tobacco leaves from different regions. Front Microbiol, 2022, 13. ArticleID: 907270

[48]

Zhong R, Sun Z, Feng L, et al.. Decoding honey-sweet flavored flue-cured tobacco from Guizhou with data science and flavoromics by volatile and cell wall components. Front Chem, 2025, 13. ArticleID: 1613828

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