Secretory expression of β-1,3-glucomannanase in the oleaginous yeast Rhodosporidium toruloides for improved lipid extraction

Shiyu Liang , Yue Zhang , Liting Lyu , Shuang Wang , Zongbao K. Zhao

Bioresources and Bioprocessing ›› 2023, Vol. 10 ›› Issue (1) : 16

PDF
Bioresources and Bioprocessing ›› 2023, Vol. 10 ›› Issue (1) : 16 DOI: 10.1186/s40643-023-00639-2
Research

Secretory expression of β-1,3-glucomannanase in the oleaginous yeast Rhodosporidium toruloides for improved lipid extraction

Author information +
History +
PDF

Abstract

Lipids produced by oleaginous yeasts are considered as sustainable sources for the production of biofuels and oleochemicals. The red yeast Rhodosporidium toruloides can accumulate lipids to over 70% of its dry cell mass. To facilitate lipid extraction, a recombinant β-1,3-glucomannanase, MAN5C, has been applied to partially breakdown R. toruloides cell wall. In this study, R. toruloides NP11 was engineered for secretory expression of MAN5C to simplify the lipid extraction process. Specifically, a cassette contained a codon-optimized gene MAN5C was integrated into the genome of R. toruloides by Agrobacterium-mediated transformation. The engineered strain NP11-MAN5C was found with proper expression and secretion of active MAN5C, yet no notable compromise in terms of cell growth and lipid production. When NP11-MAN5C cell cultures were extracted with ethyl acetate without any pretreatment, 20% of total lipids were recovered, 4.3-fold higher than that of the parental strain NP11. When the cells were heat-treated followed by extraction with ethyl acetate in the presence of the culture broth supernatants, up to 93% of total lipids were recovered, confirming beneficial effects of MAN5C produced in situ. This study provides a new strategy to engineer oleaginous yeasts for more viable lipid extraction and down-stream processes.

Keywords

Cell wall engineering / β-1,3-glucomannanase / Lipid extraction / Oleaginous yeast / Rhodosporidium toruloides / Secretory expression

Cite this article

Download citation ▾
Shiyu Liang, Yue Zhang, Liting Lyu, Shuang Wang, Zongbao K. Zhao. Secretory expression of β-1,3-glucomannanase in the oleaginous yeast Rhodosporidium toruloides for improved lipid extraction. Bioresources and Bioprocessing, 2023, 10(1): 16 DOI:10.1186/s40643-023-00639-2

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Arai M, Lee TH, Murao S. Substrate specificity of the Penicillium lilacinum enzyme lytic to the cell wall of Rhodotorula glutinis and the structure of the Rhodotorula cell wall glucomannan. Curr Microbiol, 1978, 1(3): 185-188.

[2]

Bonturi N, Matsakas L, Nilsson R, Christakopoulos P, Miranda EA, Berglund KA, Rova U. Single cell oil producing yeasts Lipomyces starkeyi and Rhodosporidium toruloides: selection of extraction strategies and biodiesel property prediction. Energies, 2015, 8(6): 5040-5052.

[3]

Bzducha-Wrobel A, Kieliszek M, Blazejak S. Chemical composition of the cell wall of probiotic and brewer’s yeast in response to cultivation medium with glycerol as a carbon source. Eur Food Res Technol, 2013, 237(4): 489-499.

[4]

Dong T, Knoshaug EP, Pienkos PT, Laurens LML. Lipid recovery from wet oleaginous microbial biomass for biofuel production: a critical review. Appl Energy, 2016, 177: 879-895.

[5]

Eudes A, Sathitsuksanoh N, Baidoo EEK, George A, Liang Y, Yang F, Singh S, Keasling JD, Simmons BA, Loque D. Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency. Plant Biotechnol J, 2015, 13(9): 1241-1250.

[6]

Hao ZY, Yogiswara S, Wei T, Benites VT, Sinha A, Wang G, Baidoo EEK, Ronald PC, Scheller HV, Loque D, Eudes A. Expression of a bacterial 3-dehydroshikimate dehydratase (QsuB) reduces lignin and improves biomass saccharification efficiency in switchgrass (Panicum virgatum L.). BMC Plant Biol, 2021, 21: 1.

[7]

Hu CM, Zhao X, Zhao J, Wu SG, Zhao ZBK. Effects of biomass hydrolysis by-products on oleaginous yeast Rhodosporidium toruloides. Bioresour Technol, 2009, 100(20): 4843-4847.

[8]

Huang YD, Long YY, Li SH, Lin T, Wu JM, Zhang YF, Lin Y. Investigation on the processing and improving the cleavage efficiency of furin cleavage sites in Pichia pastoris. Microb Cell Fact, 2018, 17: 172.

[9]

Jiao X, Zhang Q, Zhang SF, Yang XB, Wang Q, Zhao ZBK. Efficient co-expression of multiple enzymes from a single promoter mediated by virus 2A sequence in the oleaginous yeast Rhodosporidium toruloides. FEMS Yeast Res, 2018, 18(8): foy086.

[10]

Jin GJ, Yang F, Hu CM, Shen HW, Zhao ZBK. Enzyme-assisted extraction of lipids directly from the culture of the oleaginous yeast Rhodosporidium toruloides. Bioresour Technol, 2012, 111: 378-382.

[11]

Jin GJ, Zhang YX, Shen HW, Yang XB, Xie HB, Zhao ZBK. Fatty acid ethyl esters production in aqueous phase by the oleaginous yeast Rhodosporidium toruloides. Bioresour Technol, 2013, 150: 266-270.

[12]

Khot M, Raut G, Ghosh D, Alarcón-Vivero M, Contreras D, Ravikumar A. Lipid recovery from oleaginous yeasts: perspectives and challenges for industrial applications. Fuel, 2020, 259: 116292.

[13]

Kruger JS, Cleveland NS, Yeap RY, Dong T, Ramirez KJ, Nagle NJ, Lowell AC, Beckham GT, McMillan JD, Biddy MJ. Recovery of fuel-precursor lipids from oleaginous yeast. ACS Sust Chem Eng, 2018, 6(3): 2921-2931.

[14]

Lebre PH, Aliyu H, De Maayer P, Cowan DA. In silico characterization of the global Geobacillus and Parageobacillus secretome. Microb Cell Fact, 2018, 17: 156.

[15]

Li YH, Zhao ZBK, Bai FW. High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture. Enzyme Microb Technol, 2007, 41(3): 312-317.

[16]

Li J, Zhang MM, Wan C, Den Haan R, Bai FW, Zhao XQ. Improved cellulase production in recombinant Saccharomyces cerevisiae by disrupting the cell wall protein-encoding gene CWP2. J Biosci Bioeng, 2020, 129(2): 165-171.

[17]

Lin XP, Yang F, Zhou YJ, Zhu ZW, Jin GJ, Zhang SF, Zhao ZBK. Highly-efficient colony PCR method for red yeasts and its application to identify mutations within two leucine auxotroph mutants. Yeast, 2012, 29(11): 467-474.

[18]

Lin XP, Wang YN, Zhang SF, Zhu ZW, Zhou YJJ, Yang F, Sun WY, Wang XY, Zhao ZBK. Functional integration of multiple genes into the genome of the oleaginous yeast Rhodosporidium toruloides. FEMS Yeast Res, 2014, 14(4): 547-555.

[19]

Liu XJ, Zhang Y, Liu HD, Jiao X, Zhang Q, Zhang SF, Zhao ZBK. RNA interference in the oleaginous yeast Rhodosporidium toruloides. FEMS Yeast Res, 2019, 19(3): 031.

[20]

Liu D, Geiselman GM, Coradetti S, Cheng YF, Kirby J, Prahl JP, Jacobson O, Sundstrom ER, Tanjore D, Skerker JM, Gladden J. Exploiting nonionic surfactants to enhance fatty alcohol production in Rhodosporidium toruloides. Biotechnol Bioeng, 2020, 117(5): 1418-1425.

[21]

Liu SS, Zhang MY, Ren YY, Jin GJ, Tao YS, Lyu LT, Zhao ZBK, Yang XB. Engineering Rhodosporidium toruloides for limonene production. Biotechnol Biofuels, 2021, 14(1): 243.

[22]

Liu ZJ, Radi M, Mohamed ETT, Feist AM, Dragone G, Mussatto SI. Adaptive laboratory evolution of Rhodosporidium toruloides to inhibitors derived from lignocellulosic biomass and genetic variations behind evolution. Bioresour Technol, 2021, 333: 125171.

[23]

Lyu LT, Chu YD, Zhang SF, Zhang Y, Huang QT, Wang S, Zhao ZBK. Engineering the oleaginous yeast Rhodosporidium toruloides for improved resistance against inhibitors in biomass hydrolysates. Front Bioeng Biotechnol, 2021, 9: 768934.

[24]

Massahi A, Calik P. In-silico determination of Pichia pastoris signal peptides for extracellular recombinant protein production. J Theor Biol, 2015, 364: 179-188.

[25]

Murao S, Yamamoto R, Arai M. Isolation and identification of red yeast cell wall lytic enzyme producing microorganism. Agric Biol Chem, 1976, 40(1): 23-26.

[26]

Naranjo CA, Jivan AD, Vo MN, Campos KHD, Deyarmin JS, Hekman RM, Uribe C, Hang AR, Her K, Fong MM, Choi JJ, Chou C, Rabara TR, Myers G, Moua P, Thor D, Risser DD, Vierra CA, Franz AH, Lin-Cereghino J, Lin-Cereghino GP. Role of BGS13 in the secretory mechanism of Pichia pastoris. Appl Environ Microbiol, 2019, 85(24): e01615-e1619.

[27]

Park YK, Nicaud JM, Ledesma-Amaro R. The engineering potential of Rhodosporidium toruloides as a workhorse for biotechnological applications. Trends Biotechnol, 2018, 36(3): 304-317.

[28]

Pogorelko G, Fursova O, Lin M, Pyle E, Jass J, Zabotina OA. Post-synthetic modification of plant cell walls by expression of microbial hydrolases in the apoplast. Plant Mol Biol, 2011, 77(4–5): 433-445.

[29]

Ram AFJ, Klis FM. Identification of fungal cell wall mutants using susceptibility assays based on Calcofluor white and Congo red. Nat Protoc, 2006, 1(5): 2553-2556.

[30]

Sugino H, Furuichi S, Murao S, Arai M, Fujii T. Molecular characterization of a Rhodotorula-lytic enzyme from Paecilomyces lilacinus having β-1,3-mannanase activity. Biosci Biotechnol Biochem, 2004, 68(3): 757-760.

[31]

Unger T, Jacobovitch Y, Dantes A, Bernheim R, Peleg Y. Applications of the restriction free (RF) cloning procedure for molecular manipulations and protein expression. J Struct Biol, 2010, 172(1): 34-44.

[32]

Wen ZQ, Zhang SF, Odoh CK, Jin MJ, Zhao ZBK. Rhodosporidium toruloides—a potential red yeast chassis for lipids and beyond. FEMS Yeast Res, 2020, 20(5): 038.

[33]

Yang F, Zhang SF, Jin GJ, Lin XP, Zhao ZBK. Purification and characterization of a β-1,3-glucomannanase expressed in Pichia pastoris. Enzyme Microb Technol, 2011, 49(2): 223-228.

[34]

Zainuddin MF, Fai CK, Ariff AB, Rios-Solis L, Halim M. Current pretreatment/cell disruption and extraction methods used to improve intracellular lipid recovery from oleaginous yeasts. Microorganisms, 2021, 9(2): 251.

[35]

Zhang Y, Peng J, Zhao HM, Shi SB. Engineering oleaginous yeast Rhodotorula toruloides for overproduction of fatty acid ethyl esters. Biotechnol Biofuels, 2021, 14(1): 115.

[36]

Zhang Y, Zhang SF, Chu YD, Zhang Q, Zhou RH, Yu D, Wang S, Lyu LT, Xu GW, Zhao ZK. Genetic manipulation of the interconversion between diacylglycerols and triacylglycerols in Rhodosporidium toruloides. Front Bioeng Biotechnol, 2022, 10: 1034972.

[37]

Zhu ZW, Zhang SF, Liu HW, Shen HW, Lin XP, Yang F, Zhou YJJ, Jin GJ, Ye ML, Zou HF, Zhao ZBK. A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides. Nat Commun, 2012, 3: 1112.

[38]

Zwietering MH, Jongenburger I, Rombouts FM, Vantriet K. Modeling of the bacterial growth curve. Appl Environ Microbiol, 1990, 56(6): 1875-1881.

Funding

National Key R&D Program of China(2021YFA0910600)

National Natural Science Foundation of China(22238010)

AI Summary AI Mindmap
PDF

127

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/