Development of a plasmid stabilization system in Vibrio natriegens for the high production of 1,3-propanediol and 3-hydroxypropionate

Ye Zhang , Qing Sun , Yu Liu , Xuecong Cen , Dehua Liu , Zhen Chen

Bioresources and Bioprocessing ›› 2021, Vol. 8 ›› Issue (1) : 125

PDF
Bioresources and Bioprocessing ›› 2021, Vol. 8 ›› Issue (1) : 125 DOI: 10.1186/s40643-021-00485-0
Research

Development of a plasmid stabilization system in Vibrio natriegens for the high production of 1,3-propanediol and 3-hydroxypropionate

Author information +
History +
PDF

Abstract

Vibrio natriegens is a promising industrial chassis with a super-fast growth rate and high substrate uptake rates. V. natriegens was previously engineered to produce 1,3-propanediol (1,3-PDO) from glycerol by overexpressing the corresponding genes in a plasmid. However, antibiotic selection pressure for plasmid stability was not satisfactory and plasmid loss resulted in reduced productivity of the bioprocess. In this study, we developed an antibiotic-free plasmid stabilization system for V. natriegens. The system was achieved by shifting the glpD gene, one of the essential genes for glycerol degradation, from the chromosome to plasmid. With this system, engineered V. natriegens can stably maintain a large expression plasmid during the whole fed-batch fermentation and accumulated 69.5 g/L 1,3-PDO in 24 h, which was 23% higher than that based on antibiotic selection system. This system was also applied to engineering V. natriegens for the production of 3-hydroxypropionate (3-HP), enabling the engineered strain to accumulate 64.5 g/L 3-HP in 24 h, which was 30% higher than that based on antibiotic system. Overall, the developed strategy could be useful for engineering V. natriegens as a platform for the production of value-added chemicals from glycerol.

Graphic Abstract

Keywords

Vibrio natriegens / 1,3-propanediol / 3-hydroxypropionate / Plasmid maintenance / Antibiotic free / Glycerol

Cite this article

Download citation ▾
Ye Zhang, Qing Sun, Yu Liu, Xuecong Cen, Dehua Liu, Zhen Chen. Development of a plasmid stabilization system in Vibrio natriegens for the high production of 1,3-propanediol and 3-hydroxypropionate. Bioresources and Bioprocessing, 2021, 8(1): 125 DOI:10.1186/s40643-021-00485-0

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Becker J, Wittmann C. Advanced biotechnology: metabolically engineered cells for the bio-based production of chemicals and fuels, materials, and health-care products. Angew Chem Int Ed Engl, 2015, 54: 3328-3350.

[2]

Chen Z, Bommareddy RR, Frank D, Rappert S, Zeng AP. Deregulation of feedback inhibition of phosphoenolpyruvate carboxylase for improved lysine production in Corynebacterium glutamicum. Appl Environ Microbiol, 2014, 80: 1388-1393.

[3]

Chen Z, Huang J, Wu Y, Wu W, Zhang Y, Liu D. Metabolic engineering of Corynebacterium glutamicum for the production of 3-hydroxypropionic acid from glucose and xylose. Metab Eng, 2017, 39: 151-158.

[4]

Clomburg JM, Crumbley AM, Gonzalez R. Industrial biomanufacturing: the future of chemical production. Science, 2017, 355: 804-814.

[5]

Dalia AB, McDonough E, Camilli A. Multiplex genome editing by natural transformation. Proc Natl Acad Sci USA, 2014, 111: 8937-8942.

[6]

Dalia TN, Hayes CA, Stolyar S, Marx CJ, McKinlay JB, Dalia AB. Multiplex genome editing by natural transformation (MuGENT) for synthetic biology in Vibrio natriegens. ACS Synth Biol, 2017, 6: 1650-1655.

[7]

de Almeida A, Nikel PI, Giordano AM, Pettinari MJ. Effects of granule-associated protein PhaP on glycerol-dependent growth and polymer production in poly(3-hydroxybutyrate)-producing Escherichia coli. Appl Environ Microbiol, 2007, 73: 7912-7916.

[8]

Dishisha T, Pyo SH, Hatti-Kaul R. Bio-based 3-hydroxypropionic- and acrylic acid production from biodiesel glycerol via integrated microbial and chemical catalysis. Microb Cell Fact, 2015, 14: 200.

[9]

Hoffart E, Grenz S, Lange J, Nitschel R, Muller F, Schwentner A, Feith A, Lenfers-Lucker M, Takors R, Blombach B. High substrate uptake rates empower Vibrio natriegens as production host for industrial biotechnology. Appl Environ Microbiol, 2017, 83: e01614-e1617.

[10]

Jo JE, Mohan Raj S, Rathnasingh C, Selvakumar E, Jung WC, Park S. Cloning, expression, and characterization of an aldehyde dehydrogenase from Escherichia coli K-12 that utilizes 3-Hydroxypropionaldehyde as a substrate. Appl Microbiol Biotechnol, 2008, 81: 51-60.

[11]

Kang WK, Lim HG, Yang J, Noh MH, Seo SW, Gung GY. Synthetic auxotrophs for stable and tunable maintenance of plasmid copy number. Metab Eng, 2018, 48: 121-128.

[12]

Kim JW, Ko Y-S, Chae TU, Lee SY. High-level production of 3-hydroxypropionic acid from glycerol as a sole carbon source using metabolically engineered Escherichia coli. Biotechnol Bioeng, 2020, 117(7): 2139-2152.

[13]

Ko Y-S, Kim JW, Lee JA, Han T, Kim GB, Park JE, Lee SY. Tools and strategies of systems metabolic engineering for the development of microbial cell factories for chemical production. Chem Soc Rev, 2020, 49: 4615-4636.

[14]

Lee CS, Aroua MK, Daud WMAW, Cognet P, Pérès-Lucchese Y, Fabre PL, Reynes O, Latapie L. A review: Conversion of bioglycerol into 1,3-propanediol via biological and chemical method. Renew Sust Energ Rev, 2015, 42: 963-972.

[15]

Lee JH, Jung MY, Oh MK. High-yield production of 1,3-propanediol from glycerol by metabolically engineered Klebsiella pneumoniae. Biotechnol Biofuels, 2018, 11: 104.

[16]

Lee HH, Ostrov N, Wong BG, Gold MA, Khalil AS, Church GM. Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi. Nat Microbiol, 2019, 4: 1105-1113.

[17]

Lim HG, Kwak DH, Park S, Woo S, Yang JS, Kang CW, Kim B, Noh MH, Seo SW, Jung GY. Vibrio sp. dhg as a platform for the biorefinery of brown macroalgae. Nat Commun, 2019, 10: 2486.

[18]

Mezzina MP, Alvarez DS, Egoburo DE, Diaz Pena R, Nikel PI, Pettinari MJ. A new player in the biorefineries field: phasin PhaP enhances tolerance to solvents and boosts ethanol and 1,3-propanediol synthesis in Escherichia coli. Appl Environ Microbiol, 2017, 83: e00662-e717.

[19]

Nizam SA, Zhu J, Ho PY, Shimizu K. Effects of arcA and arcB genes knockout on the metabolism in Escherichia coli under aerobic condition. Biochem Eng J, 2009, 44: 240-250.

[20]

Pérez JM, Arenas FA, Pradenas GA, Sandoval JM, Vásquez CC. Escherichia coli YqhD exhibits aldehyde reductase activity and protects from the harmful effect of lipid peroxidation-derived aldehydes. J Biol Chem, 2008, 283(12): 7346-7353.

[21]

Rugbjerg P, Sommer M. Overcoming genetic heterogeneity in industrial fermentations. Nat Biotechnol, 2019, 37: 869-876.

[22]

Sulzenbacher G, Alvarez K, Van Den Heuvel RH, Versluis C, Spinelli S, Campanacci V, Valencia C, Cambillau C, Eklund H, Tegoni M. Crystal structure of E.coli alcohol dehydrogenase YqhD: evidence of a covalently modified NADP coenzyme. J Mol Biol, 2004, 342: 489-502.

[23]

Sun YQ, Shen JT, Yan L, Zhou JJ, Jiang LL, Chen Y, Yuan JL, Feng E, Xiu ZL. Advances in bioconversion of glycerol to 1,3-propanediol: prospects and challenges. Process Biochem, 2018, 71: 134-146.

[24]

Terrinoni M, Nordqvist S, Källgård S, Holmgren J, Lebensa M. A novel nonantibiotic, lgt-based selection system for stable maintenance of expression vectors in Escherichia coli and Vibrio cholerae. Appl Environ Microbiol, 2018, 84: e02143-17.

[25]

Wang Z, Tschirhart T, Schultzhaus Z, Kelly EE, Chen A, Oh E, Nag O, Glaser E, Kim E, Lloyd P, Charles P, Li W, Leary D, Compton J, Phillips D, Dhinojwala A, Payne G, Vora G. Melanin produced by the fast-growing marine bacterium Vibrio natriegens through heterologous biosynthesis: characterization and application. Appl Environ Microbiol, 2020, 86: e02749-e2719.

[26]

Weiner JH, Heppel LA. Purification of the membrane-bound and pyridine nucleotide-independent L-glycerol 3-phosphate dehydrogenase from Escherichia coli. Biochem Biophys Res Commun, 1972, 47: 1360-1365.

[27]

Weinstock MT, Hesek ED, Wilson CM, Gibson DG. Vibrio natriegens as a fast-growing host for molecular biology. Nat Methods, 2016, 13: 849-851.

[28]

Zhang Y, Liu D, Chen Z. Production of C2–C4 diols from renewable bioresources: new metabolic pathways and metabolic engineering strategies. Biotechnol Biofuels, 2017, 10: 299.

[29]

Zhang Y, Li Z, Liu Y, Cen X, Liu D, Chen Z. Systems metabolic engineering of Vibrio natriegens for the production of 1,3-propanediol. Metab Eng, 2021, 65: 52-65.

[30]

Zhao P, Ma C, Xu L, Tian P. Exploiting tandem repetitive promoters for high-level production of 3-hydroxypropionic acid. Appl Microbiol Biotechnol, 2019, 103: 4017-4031.

Funding

Key Technologies Research and Development Program(2019YFE0196900)

National Natural Science Foundation of China(21878172)

AI Summary AI Mindmap
PDF

117

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/