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A multi-enzyme cascade for efficient production of d-p-hydroxyphenylglycine from l-tyrosine

Xu Tan , Sheng Zhang , Wei Song , Jia Liu , Cong Gao , Xiulai Chen , Liming Liu , Jing Wu

Bioresources and Bioprocessing ›› 2021, Vol. 8 ›› Issue (1) : 41

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Bioresources and Bioprocessing ›› 2021, Vol. 8 ›› Issue (1) : 41 DOI: 10.1186/s40643-021-00394-2
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A multi-enzyme cascade for efficient production of d-p-hydroxyphenylglycine from l-tyrosine

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Abstract

In this study, a four-enzyme cascade pathway was developed and reconstructed in vivo for the production of d-p-hydroxyphenylglycine (D-HPG), a valuable intermediate used to produce β-lactam antibiotics and in fine-chemical synthesis, from l-tyrosine. In this pathway, catalytic conversion of the intermediate 4-hydroxyphenylglyoxalate by meso-diaminopimelate dehydrogenase from Corynebacterium glutamicum (CgDAPDH) was identified as the rate-limiting step, followed by application of a mechanism-guided “conformation rotation” strategy to decrease the hydride-transfer distance d(C6HDAP−C4NNADP) and increase CgDAPDH activity. Introduction of the best variant generated by protein engineering (CgDAPDHBC621/D120S/W144S/I169P with 5.32 ± 0.85 U·mg−1 specific activity) into the designed pathway resulted in a D-HPG titer of 42.69 g/L from 50-g/L l-tyrosine in 24 h, with 92.5% conversion, 71.5% isolated yield, and > 99% enantiomeric excess in a 3-L fermenter. This four-enzyme cascade provides an efficient enzymatic approach for the industrial production of D-HPG from cheap amino acids.

Keywords

d-p-hydroxyphenylglycine')">d-p-hydroxyphenylglycine / meso-diaminopimelate dehydrogenase / Hydride transfer distance / l-tyrosine')">l-tyrosine / Protein engineering

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Xu Tan, Sheng Zhang, Wei Song, Jia Liu, Cong Gao, Xiulai Chen, Liming Liu, Jing Wu. A multi-enzyme cascade for efficient production of d-p-hydroxyphenylglycine from l-tyrosine. Bioresources and Bioprocessing, 2021, 8(1): 41 DOI:10.1186/s40643-021-00394-2

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References

[1]

Abraham MJ, Murtola T, Schulz R, Páll S, Smith JC, Hess B, Lindahl E. GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers. SoftwareX, 2015, 1(2): 19-25.

[2]

Ahmed ST, Parmeggiani F, Weise NJ, Flitsch SL, Turner NJ. Chemoenzymatic synthesis of optically pure L- and D-biarylalanines through biocatalytic asymmetric amination and palladium-catalyzed arylation. ACS Catal, 2015, 5(9): 5410-5413.

[3]

Akita H, Doi K, Kawarabayasi Y, Ohshima T. Creation of a thermostable NADP(+)-dependent D-amino acid dehydrogenase from Ureibacillus thermosphaericus strain A1 meso-diaminopimelate dehydrogenase by site-directed mutagenesis. Biotechnol Lett., 2012, 34(9): 1693-1699.

[4]

Akita H, Hayashi J, Sakuraba H, Ohshima T. Artificial thermostable D-amino acid dehydrogenase: creation and application. Front Microbiol, 2018, 9: 11.

[5]

Aranaz I, Acosta N, Fernandez VME, Heras A. Optimization of D-amino acid production catalyzed by immobilized multi-enzyme system in polyelectrolyte complex gel capsules. J Mol Catal B: Enzym, 2015, 121: 45-52.

[6]

Bellini RG, Coronado MA, Paschoal AR, Do Rego TG, Hungria M, Ribeiro DV, Tereza A, Nicolas MF. Structural analysis of a novel N-carbamoyl-D-amino acid amidohydrolase from a Brazilian Bradyrhizobium japonicum strain: in silico insights by molecular modelling, docking and molecular dynamics. J Mol Graphics Modell, 2019, 86: 35-42.

[7]

Bowie JU, Luthy R, Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science, 1991, 253(5016): 164-170.

[8]

Chen X, Zhang HL, Maria SMA, Liu WD, Li J, Feng JH, Liu XT, Osuna S, Guo RT, Wu QQ, Zhu DM, Ma YH. Efficient reductive desymmetrization of bulky 1,3-cyclodiketones enabled by structure-guided directed evolution of a carbonyl reductase. Nat Catal, 2019, 2(10): 931-941.

[9]

Cheng X, Chen X, Feng J, Wu Q, Zhu D. Structure-guided engineering of meso-diaminopimelate dehydrogenase for enantioselective reductive amination of sterically bulky 2-keto acids. Catal Sci Technol, 2018, 8(19): 4994-5002.

[10]

Cho I, Prier CK, Jia ZJ, Zhang RK, Gorbe T, Arnold FH. Enantioselective aminohydroxylation of styrenyl olefins catalyzed by an engineered hemoprotein. Angew Chem Int Ed Engl, 2019, 58(10): 3138-3142.

[11]

Choroba OW, Williams DH, Spencer JB. Biosynthesis of the vancomycin group of antibiotics: involvement of an unusual dioxygenase in the pathway to (S)-4-hydroxyphenylglycine. J Am Chem Soc, 2000, 122(22): 5389-5390.

[12]

Diez V, Loznik M, Taylor S, Winn M, Rattray NJW, Podmore H, Micklefield J, Goodacre R, Medema MH, Mueller U, Bovenberg R, Janssen DB, Takano E. Functional exchangeability of oxidase and dehydrogenase reactions in the biosynthesis of hydroxyphenylglycine, a nonribosomal peptide building block. ACS Synth Biol, 2015, 4(7): 796-807.

[13]

Gao X, Chen X, Liu W, Feng J, Wu Q, Hua L, Zhu D. A novel meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum: overexpression, characterization, and potential for D-amino acid synthesis. Appl Environ Microbiol, 2012, 78(24): 8595-8600.

[14]

Gao X, Huang F, Feng J, Chen X, Zhang HJ, Wang Z, Wu Q, Zhu DM. Engineering the meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum by site saturation mutagenesis for D-phenylalanine synthesis. Appl Environ Microbiol, 2013, 79(16): 5078-5081.

[15]

Gao X, Zhang Z, Zhang Y, Li Y, Zhu H, Wang S, Li C. A newly determined member of the meso-diaminopimelate dehydrogenase family with a broad substrate spectrum. Appl Environ Microbiol, 2017, 83(11): e00476-e1417.

[16]

Gao X, Ma Q, Chen M, Dong MM, Pu ZJ, Zhang XH, Song YD. Insight into the highly conserved and differentiated co-factor binding sites of meso-diaminopimelate dehydrogenase StDAPDH. J Chem Inf Model, 2019, 59(5): 2331-2338.

[17]

Hayashi J, Seto T, Akita H, Watanabe M, Hoshino T, Yoneda K, Ohshima T, Sakuraba H. Structure-based engineering of an artificially generated NADP(+)-dependent D-amino acid dehydrogenase. Appl Environ Microbiol, 2017, 83(11): e00491-e1417.

[18]

Hu X, Lin B. Efficient production of D-HPG with an immobilized transgenic strain E coli LY13–05. Biotechnol Biotechnol Equip., 2015, 29(5): 1003-1010.

[19]

Hubbard BK, Thomas MG, Walsh CT. Biosynthesis of L-p-hydroxyphenylglycine, a non-proteinogenic amino acid constituent of peptide antibiotics. Chem Biol, 2000, 7(12): 931-942.

[20]

Kan SBJ, Lewis RD, Chen K, Arnold FH. Directed evolution of cytochrome c for carbon-silicon bond formation: bringing silicon to life. Science, 2016, 354(6315): 1048-1051.

[21]

Laskowski RA, Macarthur MW, Moss DS, Thornton JM. Procheck - a program to check the stereochemical quality of protein structures. J Appl Crystallogr, 1993, 26(2): 283-291.

[22]

Li F, Liu L, Du Y, Ban R. Construction of recombinant Bacillus subtilis as catalyst for preparing D-p-hydroxyphenylglycine. Chin Biotechnol., 2019, 39(3): 75-86.

[23]

Liu SP, Liu RX, El-Rotail AAMM, Ding ZY, Gu ZH, Zhang L, Shi GY. Heterologous pathway for the production of L-phenylglycine from glucose by E. coli. J Biotechnol, 2014, 186: 91-97.

[24]

Liu W, Li Z, Huang CH, Guo RT, Zhao LM, Zhang DL, Chen X, Wu QQ, Zhu DM. Structural and mutational studies on the unusual substrate specificity of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum. ChemBioChem, 2014, 15(2): 217-222.

[25]

Liu W, Guo RT, Chen X, Li Z, Gao XZ, Huang C, Wu QP, Feng JH, Zhu DM. Structural analysis reveals the substrate-binding mechanism for the expanded substrate specificity of mutant meso-diaminopimelate dehydrogenase. ChemBioChem, 2015, 16(6): 924-929.

[26]

Liu SP, Liu RX, Mao J, Zhang L, Ding ZY, Gu ZH, Shi GY. Structural-based screening of L-phenylglycine aminotransferase using L-phenylalanine as the optimal amino donor: recycling of L-phenylalanine to produce L-phenylglycine. Biotechnol Bioprocess Eng, 2016, 21(1): 153-159.

[27]

Liu Y, Zhu L, Qi W, Yu B. Biocatalytic production of D-p-hydroxyphenylglycine by optimizing protein expression and cell wall engineering in Escherichia coli. Appl Microbiol Biotechnol, 2019, 103(21–22): 8839-8851.

[28]

Luthy R, Bowie JU, Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature, 1992, 356(6364): 83-85.

[29]

Muller U, van Assema F, Gunsior M, Orf S, Kremer S, Schipper D, Wagemans A, Townsend CA, Sonke T, Bovenberg R, Wubbolts M. Metabolic engineering of the E-coli L-phenylalanine pathway for the production of D-phenylglycine (D-Phg). Metab Eng, 2006, 8(3): 196-208.

[30]

Nandanwar HS, Prajapati R, Hoondal GS. (D)-p-hydroxyphenylglycine production by thermostable D-hydantoinase from Brevibacillus parabrevis-PHG1. Biocatal Biotransform, 2013, 31(1): 22-32.

[31]

Parmeggiani F, Ahmed ST, Thompson MP, Weise NJ, Galman JL, Gahloth D, Dunstan MS, Leys D, Turner NJ. Single-biocatalyst synthesis of enantiopure D-arylalanines exploiting an engineered D-amino acid dehydrogenase. Adv Synth Catal, 2016, 358(20): 3298-3306.

[32]

Pollegioni L, Rosini E, Molla G. Advances in enzymatic synthesis of D-amino acids. Int J Mol Sci, 2020

[33]

Song W, Wang JH, Wu J, Liu J, Chen XL, Liu LM. Asymmetric assembly of high-value alpha-functionalized organic acids using a biocatalytic chiral-group-resetting process. Nat Commun, 2018, 9: 3818.

[34]

Tripathi CKM, Bihari V, Tyagi RD. Microbial production of D-amino acids. Process Biochem, 2000, 35(10): 1247-1251.

[35]

Van LSG, Oh TJ, Liu W, Wendt P, Evelyn SB. Characterization of the maduropeptin biosynthetic gene cluster from Actinomadura madurae ATCC 39144 supporting a unifying paradigm for enediyne biosynthesis. J Am Chem Soc, 2007, 129(43): 13082-13094.

[36]

Vedha PK, Gunawardana M, Rozzell JD, Novick SJ. Creation of a broad-range and highly stereoselective D-amino acid dehydrogenase for the one-step synthesis of D-amino acids. J Am Chem Soc, 2006, 128(33): 10923-10929.

[37]

Wang JH, Song W, Wu J, Liu J, Chen XL, Liu LM. Efficient production of phenylpropionic acids by an amino-group-transformation biocatalytic cascade. Biotechnol Bioeng, 2020, 117(3): 614-625.

[38]

Wiltschi B, Cernava T, Dennig A, Galindo Casas M, Geier M, Gruber S, Haberbauer M, Heidinger P, Herrero Acero E, Kratzer R, Luley-Goedl C, Muller CA, Pitzer J, Ribitsch D, Sauer M, Schmolzer K, Schnitzhofer W, Sensen CW, Soh J, Steiner K, Winkler CK, Winkler M, Wriessnegger T. Enzymes revolutionize the bioproduction of value-added compounds: from enzyme discovery to special applications. Biotechnol Adv, 2020, 40: 107520.

[39]

Wu S, Snajdrova R, Moore JC, Baldenius K, Bornscheuer UT. Biocatalysis: enzymatic synthesis for industrial applications. Angew Chem Int Ed Engl, 2021, 60(1): 88-119.

[40]

Xue YP, Cao CH, Zheng YG. Enzymatic asymmetric synthesis of chiral amino acids. Chem Soc Rev, 2018, 47(4): 1516-1561.

[41]

Yu H, Yang S, Jiang W, Yang Y. Efficient biocatalytic production of D-4-hydroxyphenylglycine by whole cells of recombinant Ralstonia pickettii. Folia Microbiol, 2009, 54(6): 509-515.

[42]

Zhang J, Cai Z. Efficient and cost-effective production of D-p-hydroxyphenylglycine by whole-cell bioconversion. Biotechnol Bioprocess Eng, 2014, 19(1): 76-82.

[43]

Zhang Y, Liu R, Xu X. One-pot, two-step enzymatic synthesis of amoxicillin by complexing with Zn2+. Appl Microbiol Biotechnol, 2010, 88(1): 49-55.

[44]

Zhang DL, Zhu FY, Fan WC, Tao RS, Yu H, Yang YL, Jiang WH, Yang S. Gradually accumulating beneficial mutations to improve the thermostability of N-carbamoyl-D-amino acid amidohydrolase by step-wise evolution. Appl Microbiol Biotechnol, 2011, 90(4): 1361-1371.

[45]

Zhang P, Luo JJ, Tang KW, Yi JM, Yang CA. Kinetics study on reactive extraction of D-p-hydroxyphenylglycine by BINAP-palladium complex in Lewis cell. Chem Eng Process Intensification, 2015, 93: 50-55.

[46]

Zhang Y, Ma Q, Dong M, Zhang X, Chen Y, Gao X, Song Y. Essential role of amino acid position 71 in substrate preference by meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum IAM14863. Enzyme Microb Technol, 2018, 111: 57-62.

[47]

Zhao Y, Xu LB. Chiral separation of hydroxyphenylglycine by ligand exchange micellar electrokinetic capillary chromatography. Chromatographia, 2015, 78(9–10): 717-721.

Funding

Fundamental Research Funds for the Central Universities(JUSRP21915)

Provincial Natural Science Foundation of Jiangsu Province(BK20200622)

Youth Program of National Natural Science Foundation of China(22008089)

General Program of National Natural Science Foundation of China(21878126)

Key Technologies R & D Program of Jiangsu Province(BE2018623)

National First-Class Discipline Program of Light Industry Technology and Engineering(LITE2018-20)

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