USB1 deficiency disrupts neutrophil maturation via RNA dysregulation independent of global pre-mRNA splicing

Hang Li , Guiying Shi , Jiaming Tang , Yiying Huang , Jie Wang , Xuepei Lei , Lin Bai

Animal Models and Experimental Medicine ›› 2026, Vol. 9 ›› Issue (7) : 1353 -1363.

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Animal Models and Experimental Medicine ›› 2026, Vol. 9 ›› Issue (7) :1353 -1363. DOI: 10.1002/ame2.70206
ORIGINAL ARTICLE
USB1 deficiency disrupts neutrophil maturation via RNA dysregulation independent of global pre-mRNA splicing
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Abstract

Background: U6 biogenesis 1 (USB1) gene mutations cause poikiloderma with neutropenia (PN), which is clinically characterized by skin hyperpigmentation, nail dysplasia, neutropenia, and an elevated risk of cancer. USB1 functions as an RNA exonuclease involved in RNA maturation and stability regulation, although its precise mechanism of action in the hematopoietic system remains unclear.

Methods: We established a myeloid cell-specific USB1 knockout mouse model (USB1fl/fl-Lyz2-cre) using CRISPR/Cas9. Using a combination of research methods, including Western blot, flow cytometry, messenger RNA (mRNA) sequencing, microRNA (miRNA) sequencing, and quantitative polymerase chain reaction (qPCR), we investigated the effects of USB1 deficiency on neutrophil development and differentiation, along with the underlying signaling molecular mechanisms.

Results: Experimental results indicated that USB1 deficiency in mouse myeloid cells not only leads to dysregulation of miRNA expression but also interferes with the developmental, differentiation, and maturation processes of neutrophils by affecting key genes, such as IL1a, Selp, and Kilt. This impact can be traced back to the stages of myeloid progenitor cells.

Conclusions: USB1 influences neutrophil maturation and myeloid progenitor cell differentiation by regulating the expression of specific miRNAs and mRNAs. This provides novel in vivo experimental evidence for understanding the pathogenesis of PN in patients.

Keywords

microRNA / myeloid knockout mice / neutrophil maturation / USB1

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Hang Li, Guiying Shi, Jiaming Tang, Yiying Huang, Jie Wang, Xuepei Lei, Lin Bai. USB1 deficiency disrupts neutrophil maturation via RNA dysregulation independent of global pre-mRNA splicing. Animal Models and Experimental Medicine, 2026, 9 (7) : 1353-1363 DOI:10.1002/ame2.70206

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References

[1]

Tanaka A, Morice-Picard F, Lacombe D, et al. Identification of a homozygous deletion mutation in C16orf57 in a family with Clericuzio-type poikiloderma with neutropenia. Am J Med Genet A. 2010; 152a(6): 1347-1348.

[2]

Volpi L, Roversi G, Colombo EA, et al. Targeted next-generation sequencing appoints C16orf57 as Clericuzio-type poikiloderma with neutropenia gene. Am J Hum Genet. 2010; 86(1): 72-76.

[3]

Walne AJ, Vulliamy T, Beswick R, Kirwan M, Dokal I. Mutations in C16orf57 and normal-length telomeres unify a subset of patients with dyskeratosis congenita, poikiloderma with neutropenia and Rothmund-Thomson syndrome. Hum Mol Genet. 2010; 19(22): 4453-4461.

[4]

Concolino D, Roversi G, Muzzi GL, et al. Clericuzio-type poikiloderma with neutropenia syndrome in three sibs with mutations in the C16orf57 gene: delineation of the phenotype. Am J Med Genet A. 2010; 152a(10): 2588-2594.

[5]

Jeong HC, Shukla S, Fok WC, Huynh TN, Batista LFZ, Parker R. USB1 is a miRNA deadenylase that regulates hematopoietic development. Science. 2023; 379(6635): 901-907.

[6]

Hilcenko C, Simpson PJ, Finch AJ, et al. Aberrant 3′ oligoadenylation of spliceosomal U6 small nuclear RNA in poikiloderma with neutropenia. Blood. 2013; 121(6): 1028-1038.

[7]

Negri G, Crescenzi B, Colombo EA, et al. Expanding the role of the splicing USB1 gene from poikiloderma with neutropenia to acquired myeloid neoplasms. Br J Haematol. 2015; 171(4): 557-565.

[8]

Huynh TN, Parker R. The PARN, TOE1, and USB1 RNA deadenylases and their roles in non-coding RNA regulation. J Biol Chem. 2023; 299(9):105139.

[9]

Shchepachev V, Wischnewski H, Missiaglia E, Soneson C, Azzalin CM. Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3′-to-5′ RNA exonuclease processing U6 small nuclear RNA. Cell Rep. 2012; 2(4): 855-865.

[10]

Shchepachev V, Wischnewski H, Soneson C, Arnold AW, Azzalin CM. Human Mpn1 promotes post-transcriptional processing and stability of U6atac. FEBS Lett. 2015; 589(18): 2417-2423.

[11]

Mroczek S, Dziembowski A. U6 RNA biogenesis and disease association. Wiley Interdiscip Rev: RNA. 2013; 4(5): 581-592.

[12]

Mroczek S, Krwawicz J, Kutner J, et al. C16orf57, a gene mutated in poikiloderma with neutropenia, encodes a putative phosphodiesterase responsible for the U6 snRNA 3′ end modification. Genes Dev. 2012; 26(17): 1911-1925.

[13]

Patil P, Uechi T, Kenmochi N. Incomplete splicing of neutrophil-specific genes affects neutrophil development in a zebrafish model of poikiloderma with neutropenia. RNA Biol. 2015; 12(4): 426-434.

[14]

Colombo EA, Carra S, Fontana L, Bresciani E, Cotelli F, Larizza L. A zebrafish model of poikiloderma with neutropenia recapitulates the human syndrome hallmarks and traces back neutropenia to the myeloid progenitor. Sci Rep. 2015; 5:15814.

[15]

Zúñiga-Pflücker JC. T-cell development made simple. Nat Rev Immunol. 2004; 4(1): 67-72.

[16]

Fu H, Ward EJ, Marelli-Berg FM. Mechanisms of T cell organotropism. Cell Mol Life Sci. 2016; 73(16): 3009-3033.

[17]

Yue H, Shi G, Tang J, Li X, Bai L. HAX1 inhibits apoptosis and promotes maturation of neutrophils. Cell Commun Signal. 2025; 23(1): 349.

[18]

Richardson ET, Shukla S, Nagy N, et al. ERK signaling is essential for macrophage development. PLoS One. 2015; 10(10):e0140064.

[19]

Zhang Y, Li X, Dai Y, et al. Neutrophil N1 polarization induced by cardiomyocyte-derived extracellular vesicle miR-9-5p aggravates myocardial ischemia/reperfusion injury. J Nanobiotechnol. 2024; 22(1): 632.

[20]

Zhang L, Wang X, Wu J, Xiao R, Liu J. MiR-335-3p inhibits cell proliferation and induces cell cycle arrest and apoptosis in acute myeloid leukemia by targeting EIF3E. Biosci Biotechnol Biochem. 2021; 85(9): 1953-1961.

[21]

Dore LC, Amigo JD, Dos Santos CO, et al. A GATA-1-regulated microRNA locus essential for erythropoiesis. Proc Natl Acad Sci USA. 2008; 105(9): 3333-3338.

[22]

Hao X, Shen Y, Liu J, et al. Solid tumour-induced systemic immunosuppression involves dichotomous myeloid-B cell interactions. Nat Cell Biol. 2024; 26(11): 1971-1983.

[23]

Zhang N, Tang W, Torres L, et al. Cell surface RNAs control neutrophil recruitment. Cell. 2024; 187(4): 846-860.e817.

[24]

Zhang Z, Zhu P, Zhou Y, et al. A novel slug-containing negative-feedback loop regulates SCF/c-kit-mediated hematopoietic stem cell self-renewal. Leukemia. 2017; 31(2): 403-413.

[25]

El Ouriaghli F, Fujiwara H, Melenhorst JJ, Sconocchia G, Hensel N, Barrett AJ. Neutrophil elastase enzymatically antagonizes the in vitro action of G-CSF: implications for the regulation of granulopoiesis. Blood. 2003; 101(5): 1752-1758.

[26]

Andrews RG, Knitter GH, Bartelmez SH, et al. Recombinant human stem cell factor, a c-kit ligand, stimulates hematopoiesis in primates. Blood. 1991; 78(8): 1975-1980.

[27]

Clericuzio C, Harutyunyan K, Jin W, et al. Identification of a novel C16orf57 mutation in Athabaskan patients with poikiloderma with neutropenia. Am J Med Genet A. 2011; 155a(2): 337-342.

[28]

Shahbaz S, Rosero EP, Syed H, et al. Bipotential B-neutrophil progenitors are present in human and mouse bone marrow and emerge in the periphery upon stress hematopoiesis. MBio. 2024; 15(8):e0159924.

[29]

Cerutti A, Puga I, Magri G. The B cell helper side of neutrophils. J Leukoc Biol. 2013; 94(4): 677-682.

[30]

Nowek K, Sun SM, Bullinger L, et al. Aberrant expression of miR-9/9* in myeloid progenitors inhibits neutrophil differentiation by post-transcriptional regulation of ERG. Leukemia. 2016; 30(1): 229-237.

[31]

Etulain J, Martinod K, Wong SL, Cifuni SM, Schattner M, Wagner DD. P-selectin promotes neutrophil extracellular trap formation in mice. Blood. 2015; 126(2): 242-246.

[32]

England H, Summersgill HR, Edye ME, Rothwell NJ, Brough D. Release of interleukin-1α or interleukin-1β depends on mechanism of cell death. J Biol Chem. 2014; 289(23): 15942-15950.

[33]

Ratitong B, Marshall M, Pearlman E. β-Glucan-stimulated neutrophil secretion of IL-1α is independent of GSDMD and mediated through extracellular vesicles. Cell Rep. 2021; 35(7):109139.

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2026 The Author(s). Animal Models and Experimental Medicine published by John Wiley & Sons Australia, Ltd on behalf of The Chinese Association for Laboratory Animal Sciences.

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