Integrating molecular modeling methods to study the interaction between Azinphos-methyl and gold nanomaterials for environmental applications

Oumaima Douass , Muneerah Mogren Al-Mogren , M’Hamed Touil , Samira Dalbouha , Moustapha Belmouden , Bousselham Samoudi , Santiago Sanchez-cortes

AIMS Environmental Science ›› 2024, Vol. 11 ›› Issue (5) : 776 -796.

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AIMS Environmental Science ›› 2024, Vol. 11 ›› Issue (5) :776 -796. DOI: 10.3934/environsci.2024039
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Integrating molecular modeling methods to study the interaction between Azinphos-methyl and gold nanomaterials for environmental applications
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Abstract

We utilized density functional theory (DFT) to investigate the electronic structure and Raman spectrum of Azinphos-methyl (AzM) (C10 H12 N3 O3 PS2) both in isolation and in combination with gold nanoclusters (Aun, n=2, 4, and 6). The research highlights a significant enhancement in Raman activity with increasing gold atom count from AzM-Au2 to AzM-Au4. The DFT calculations provide a comprehensive analysis of various electronic properties, including HOMO and LUMO energies, gap energy (Eg), ionization potential (IP), and electron affinity (EA), comparing these with experimental results from Liu et al. (2012). We also examined reactivity parameters, electrostatic properties, molecular electrostatic potential (MEP), Natural bond orbital (NBO) analysis, and atoms-in-molecules theory (AIM). The binding energy trends among the (AzM)-Aun complexes revealed a hierarchy: (AzM)-Au2 > (AzM)-Au6 > (AzM)-Au4. Monte Carlo simulations were used to explore AzM interactions with gold nanoparticles (AuNPs) of various shapes and sizes, indicating that increased Raman intensity correlates with higher global electrophilicity and total polarizability. The results suggested that the stability of the complexes improves with more gold atoms, as evidenced by greater charge transfer, interaction energies, and second-order stabilization energies (E2). Among the complexes studied, AzM-Au2 showed the highest stability. Monte Carlo simulations revealed that the right circular cone-shaped structure, especially at 7 nm, demonstrated the most negative adsorption energy, indicating stronger adsorption interactions. This research fills a gap in previous studies on AzM, providing valuable insights and serving as a reference for future work.

Keywords

Azinphos-methyl / density functional theory / gold nanoclusters / MC simulation / gold nanoparticles / interaction energies / adsorption

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Oumaima Douass, Muneerah Mogren Al-Mogren, M’Hamed Touil, Samira Dalbouha, Moustapha Belmouden, Bousselham Samoudi, Santiago Sanchez-cortes. Integrating molecular modeling methods to study the interaction between Azinphos-methyl and gold nanomaterials for environmental applications. AIMS Environmental Science, 2024, 11 (5) : 776-796 DOI:10.3934/environsci.2024039

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References

[1]

Azinphos-methyl.Availablefrom:https://webbook.nist.gov/cgi/inchi?ID=C86500&Mask=80.

[2]

SinghaDK,MajeeP,MondalSK,etal.(2017) HighlyselectiveaqueousphasedetectionofAzinphos-methylpesticideinppblevelusingacage-connected3DMOF. ChemistrySelect 2: 5760-5768. https://doi.org/10.1002/slct.201700963

[3]

TopsakalA,MidhaS,YucaE,etal.(2021) Studyonthecytocompatibility,mechanicalandantimicrobialpropertiesof3DprintedcompositescaffoldsbasedonPVA/Goldnanoparticles(AuNP)/Ampicillin(AMP)forbonetissueengineering. MaterTodayCommun 28: 102458. https://doi.org/10.1016/j.mtcomm.2021.102458

[4]

YaqoobAA,AhmadH,ParveenT,etal.(2020) Recentadvancesinmetaldecoratednanomaterialsandtheirvariousbiologicalapplications:Areview. FrontChem 8: 341. https://doi.org/10.3389/fchem.2020.00341

[5]

HohenesterU,TruglerA(2008) Interactionofsinglemoleculeswithmetallicnanoparticles. IEEEJSelTopQuant 14: 1430-1440. https://doi.org/10.1109/JSTQE.2008.2007918

[6]

DouassO,SamoudiB,BendaouO,etal.(2022) Abriefreviewofrecentadvancesinsurface-enhancedRamanspectroscopyandmicrofluidicstechnologyfortheultrasensitivedetectionofpesticides. EgyptJChem 65: 133-150. https://doi.org/10.21608/ejchem.2022.99036.4764

[7]

RicciM,BecucciM,CastellucciEM(2019)ChemicalenhancementintheSERSspectraofindigo:DFTcalculationoftheRamanspectraofindigo-Ag14complexes. VibSpectrosc 100: 159-166. https://doi.org/10.1016/j.vibspec.2018.12.001

[8]

RicciM,LofrumentoC,BecucciM,etal.(2018)TheRamanandSERSspectraofindigoandindigo-Ag2complex:DFTcalculationandcomparisonwithexperiment.SpectrochimActaA 188: 141-148. https://doi.org/10.1016/j.saa.2017.06.036

[9]

HanleyS,GiassonJ,RevolJ,etal.(1992)Atomicforcemicroscopyofcellulosemicrofibrils:Comparisonwithtransmissionelectronmicroscopy. Polymer 33: 4639-4642. https://doi.org/10.1016/0032-3861(92)90426-W

[10]

Basissets.Availablefrom: https://gaussian.com/basissets/.

[11]

IranpourM,FazaeliR,SadjadiMS,etal.(2019) Naturalbondorbital(NBO)andquantumtheoryofatomsinmolecules(QTAIM)analysesofiron-substitutedborireneandborylisomers. RussJInorgChem+ 64: 472-477. https://doi.org/10.1134/S0036023619040107

[12]

PaquetE,ViktorHL(2015) Moleculardynamics,MonteCarlosimulations,andLangevindynamics:Acomputationalreview. BiomedResInt 2015: 1-18. https://doi.org/10.1155/2015/183918

[13]

El-MageedHRA,TahaM(2019) Exploringtheintermolecularinteractionofserineandthreoninedipeptideswithgoldnanoclustersandnanoparticlesofdifferentshapesandsizesbyquantummechanicsandmolecularsimulations. JMolLiq 296: 111903. https://doi.org/10.1016/j.molliq.2019.111903

[14]

BhardwajS,RaiS,SauTK,etal.(2015) TheoreticalstudiesofRamanscatteringpropertiesofmethylphosphineandmethylamineadsorbedongoldclusters. VibSpectrosc 76: 38-47. https://doi.org/10.1016/j.vibspec.2014.12.001

[15]

HariharanA,KurnoothalaR,ChinthakayalaSK,etal.(2021) SERSofDopamine:Computationalandexperimentalstudies. SpectrochimActaA 260: 119962. https://doi.org/10.1016/j.saa.2021.119962

[16]

HariharanA,VadlamudiP(2021) SERSofEpinephrine:Acomputationalandexperimentalstudy. JMolStruct 1246: 131163. https://doi.org/10.1016/j.molstruc.2021.131163

[17]

HariharanA,VadlamudiP(2021) SERSofnorepinephrine:Acomputationalandexperimentalstudy. MaterTodayCommun 27: 102429. https://doi.org/10.1016/j.mtcomm.2021.102429

[18]

BuglakAA,KononovAI(2022) SilverclusterinteractionswithPterin:Complexstructure,bindingenergiesandspectroscopy. SpectrochimActaA 279: 121467. https://doi.org/10.1016/j.saa.2022.121467

[19]

YaoG,HuangQ(2018) DFTandSERSstudyofL-cysteineadsorptiononthesurfaceofgoldnanoparticles. JPhysChemC 122: 15241-15251. https://doi.org/10.1021/acs.jpcc.8b00949

[20]

MirandaMM,MirandaFM,MenzianiMC,etal.(2023) CanDFTcalculationsprovideusefulinformationforSERSapplications? Molecules 28: 573. https://doi.org/10.3390/molecules28020573

[21]

EricksonCB(2018) ComparisonofGaussianprocessmodelingsoftware. EurJOperRes. 266: 179-192. https://doi.org/10.1016/j.ejor.2017.10.002

[22]

HillJG(2013)Gaussianbasissetsformolecularapplications. IntJQuantumChem 113: 21-34. https://doi.org/10.1002/qua.24355

[23]

LuL,HuH,HouH,etal.(2013) AnimprovedB3LYPmethodinthecalculationoforganicthermochemistryandreactivity. ComputTheorChem 1015: 64-71. https://doi.org/10.1016/j.comptc.2013.04.009

[24]

GoldsmithBR,FlorianJ,LiuJX,etal.(2019) Two-to-three-dimensionaltransitioninneutralgoldclusters:ThecrucialroleofvanderWaalsinteractionsandtemperature. PhysRevMater 3: 016002. https://doi.org/10.1103/PhysRevMaterials.3.016002

[25]

Origin2018featurehighlights.Availablefrom: https://www.originlab.com/2018.

[26]

ParrRG,WeitaoY(1994) Density-functionaltheoryofatomsandmolecules , OxfordUniversityPress. https://doi.org/10.1093/oso/9780195092769.001.0001

[27]

Electrophilicity.Availablefrom: https://www.sciencedirect.com/topics/chemistry/electrophilicity.

[28]

KjaergaardHG,BezarKJ,BrookingKA(1999) Calculationofdipolemomentfunctionswithdensityfunctionaltheory:Applicationtovibrationalbandintensities. MolPhys 96: 1125-1138. https://doi.org/10.1080/00268979909483055

[29]

AdamoC,CossiM,ScalmaniG,etal.(1999) Accuratestaticpolarizabilitiesbydensityfunctionaltheory:AssessmentofthePBE0model. ChemPhysLett 307: 265-271. https://doi.org/10.1016/S0009-2614(99)00515-1

[30]

LinkoR,RyabovM,StrashnovP,etal.(2021) Chargetransfercomplexesof1,3,6-Trinitro-9,10-phenanthrenequinonewithpolycyclicaromaticcompounds. Molecules 26: 6391. https://doi.org/10.3390/molecules26216391

[31]

DrissiM,BenhalimaN,MegroussY,etal.(2015) Theoreticalandexperimentalelectrostaticpotentialaroundthem-nitrophenolmolecule. Molecules 20: 4042-4054. https://doi.org/10.3390/molecules20034042

[32]

HernandezB,LuqueFJ,OrozcoM MixedQM/MMmolecularelectrostaticpotentials. JComputAidMolDes 14: 329-339.

[33]

IkedaA,NakaoY,SatoH,etal.(2007) BindingenergyofTransition-metalcomplexeswithlargeπ-conjugatesystems.DensityfunctionaltheoryvsPost-Hartree−Fockmethods. JPhysChemA 111: 7124-7132. https://doi.org/10.1021/jp0708648

[34]

GlendeningED,LandisCR,WeinholdF(2012)Naturalbondorbitalmethods. WIRESComputMolSci 2: 1-42. https://doi.org/10.1002/wcms.51

[35]

LuT,ChenF(2012) Multiwfn:Amultifunctionalwavefunctionanalyzer. JComputChem 33: 580-592. https://doi.org/10.1002/jcc.22885

[36]

BourziH,OukhribR,IbrahimiBE,etal.(2020) Understandingofanti-corrosivebehaviorofsometetrazolederivativesinacidicmedium:AdsorptiononCu(111)surfaceusingquantumchemicalcalculationsandMonteCarlosimulations. SurfSci 702: 121692. https://doi.org/10.1016/j.susc.2020.121692

[37]

TahaM,LeeMJ(2020) Influenceofthealanineside-chainmethylgrouponthepeptide-goldnanoparticlesinteractions. JMolLiq 302: 112528. https://doi.org/10.1016/j.molliq.2020.112528

[38]

SunH,JinZ,YangC,etal.(2016) COMPASSII:Extendedcoverageforpolymeranddrug-likemoleculedatabases. JMolModel 22: 47. https://doi.org/10.1007/s00894-016-2909-0

[39]

AhmadZU,ChaoB,KonggidinataMI,etal.(2018) Molecularsimulationandexperimentalvalidationofresorcinoladsorptiononorderedmesoporouscarbon(OMC). JHazardMater 354: 258-265. https://doi.org/10.1016/j.jhazmat.2018.04.079

[40]

MaterialsStudio:ModulesTutorials.

[41]

KikuchiK,YoshidaM,MaekawaT,etal.(1991) MetropolisMonteCarlomethodasanumericaltechniquetosolvetheFokker-Planckequation. ChemPhysLett 185: 335-338. https://doi.org/10.1016/S0009-2614(91)85070-D

[42]

LiuB,ZhouP,LiuX,etal.(2013) Detectionofpesticidesinfruitsbysurface-enhancedRamanspectroscopycoupledwithgoldnanostructures. FoodBioprocessTech 6: 710-718. https://doi.org/10.1007/s11947-011-0774-5

[43]

GaussView,Version6,Dennington,Roy.SemichemIncShawneeMissionKS.

[44]

HazimA,AbduljalilHM,HashimA(2020) Structural,spectroscopic,electronicandopticalpropertiesofnovelPlatinumdoped(PMMA/ZrO2)and(PMMA/Al2O3)nanocompositesforelectronicsdevices. TransElectrElectro 21: 550-563. https://doi.org/10.1007/s42341-020-00210-2

[45]

TahaM,AbdEl-MageedHR,LeeMJ(2021) DFTstudyofcyclicglycine-alaninedipeptidebindingtogoldnanoclusters. JMolGraphModel 103: 107823. https://doi.org/10.1016/j.jmgm.2020.107823

[46]

LyNH,NguyenTH,NghiNĐ,etal.(2019) Surface-enhancedRamanscatteringdetectionoffipronilpesticideadsorbedonsilvernanoparticles. Sensors 19: 1355. https://doi.org/10.3390/s19061355

[47]

LangXF,YinPG,TanEZ,etal.(2013) Theoreticalinvestigationonsurface-enhancedRamanevidenceforconformationtransitionofdimercaptoazobenzeneadsorbedongoldnanoclusters. JRamanSpectrosc 44: 425-432. https://doi.org/10.1002/jrs.4217

[48]

OukhribR,AbdellaouiY,BerishaA,etal.(2021) DFT,MonteCarloandmoleculardynamicssimulationsforthepredictionofcorrosioninhibitionefficiencyofnovelpyrazolylnucleosidesonCu(111)surfaceinacidicmedia. SciRep 11: 3771. https://doi.org/10.1038/s41598-021-82927-5

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