WDR4 is a Potential Indicator of Clinical Diagnostics, Prognosis, and Immunotherapy in Hepatocellular Carcinoma (HCC)

Liyao Yang , Juan Wang , Yao Zhang , Min Li , Mazaher Maghsoudloo , Junjiang Fu , Shasha Fan , Jingjing Wang

Frontiers in Bioscience-Landmark ›› 2026, Vol. 31 ›› Issue (2) : 45764

PDF (12360KB)
Frontiers in Bioscience-Landmark ›› 2026, Vol. 31 ›› Issue (2) :45764 DOI: 10.31083/FBL45764
Original Research
research-article
WDR4 is a Potential Indicator of Clinical Diagnostics, Prognosis, and Immunotherapy in Hepatocellular Carcinoma (HCC)
Author information +
History +
PDF (12360KB)

Abstract

Background:

In recent years, immunotherapy has gained increasing prominence in the treatment of hepatocellular carcinoma (HCC). However, effective immune-related biomarkers for HCC remain limited. In this study, both transcriptomic data and clinical information on HCC were obtained from The Cancer Genome Atlas (TCGA) database.

Methods:

The TIMER and GEPIA databases were used to validate the association between WDR4 expression and immune infiltration. Additionally, clinical and pathological data from patients who underwent single-agent immunotherapy for HCC were collected from Hunan Provincial People’s Hospital (The First Affiliated Hospital of Hunan Normal University). The relationship between WDR4 expression levels, clinical pathological data, and patient prognosis was assessed using the Kruskal–Wallis test and Kaplan–Meier survival curve analysis. Spearman’s correlation analysis was utilized to confirm the relationship between WDR4, CD68, and PD-L1 in HCC tissue.

Results:

WDR4 was significantly upregulated in HCC tissues compared to para-carcinoma tissues (p < 0.001) and exhibited strong diagnostic potential. WDR4 expression showed significant associations with various immune cells, including macrophages (p < 0.001). Kaplan–Meier survival analysis revealed that patients with high WDR4 expression had shorter postoperative progression-free survival in the context of immunotherapy. Data from 37 patients who underwent postoperative single-agent immunotherapy for HCC demonstrated a significant correlation between WDR4 expression levels and disease-free survival (DFS), with strong statistical significance (log-rank p < 0.001).

Conclusions:

WDR4 shows elevated expression in HCC tissues and is associated with immune infiltration, establishing it as a prognostic biomarker in HCC. Furthermore, the positive correlation observed between WDR4 and CD68, as well as PD-L1 (CD274), underscores its potential as a guiding factor in immunotherapeutic approaches for HCC.

Graphical abstract

Keywords

hepatocellular carcinoma / TCGA / the WDR4 gene / clinical prognosis / immunotherapy

Cite this article

Download citation ▾
Liyao Yang, Juan Wang, Yao Zhang, Min Li, Mazaher Maghsoudloo, Junjiang Fu, Shasha Fan, Jingjing Wang. WDR4 is a Potential Indicator of Clinical Diagnostics, Prognosis, and Immunotherapy in Hepatocellular Carcinoma (HCC). Frontiers in Bioscience-Landmark, 2026, 31(2): 45764 DOI:10.31083/FBL45764

登录浏览全文

4963

注册一个新账户 忘记密码

1. Introduction

Primary liver cancer ranks as the fifth most prevalent malignancy globally and second in male mortality rates [1], with hepatocellular carcinoma (HCC) representing its predominant pathological subtype. Surgical resection remains historically effective for early-stage HCC [2], yet post-curative resection five-year recurrence exceeds 60% [3]. For advanced HCC, significant benefits have been achieved with targeted immunotherapies [4, 5, 6]. The REFLECT study [7] and the RATIONALE-301 study [8], for instance, have demonstrated promising clinical outcomes with lenvatinib targeted therapy and tislelizumab immunotherapy in the treatment of HCC. Despite molecular targeting and immunotherapy emerging as first-line treatment modalities for advanced HCC, overall survival and drug response rates remain dismally low. The high metastatic potential of HCC and its poor overall treatment outcomes remain major hurdles [9]. Additionally, the development of drug resistance significantly compromised patient prognoses [10, 11]. Currently, clinically utilized immune checkpoint blockade (ICB) drugs primarily encompass anti-CTLA-4 and anti-PD-1/PD-L1 antibodies [12, 13]. However, unlike squamous cell lung cancer, PD-L1 lacks validation as an immunotherapy biomarker in HCC. Asian HCC patients exhibit ~15% objective response rates (ORR) to ICB monotherapy, constrained by an immunosuppressive microenvironment enabling immune evasion [12, 14]. Consequently, HCC lacks validated diagnostic/prognostic biomarkers and immunotherapy assessment criteria [15], necessitating exploration of molecular targets governing HCC pathogenesis, prognosis, and immune infiltration.

The WD repeat domain 4 (WDR4) gene, located at human chromosome 21q22.3, encodes a WD-repeat protein family member primarily implicated in cell cycle regulation, signal transduction, apoptosis, and gene expression modulation [16, 17]. Elevated WDR4 expression occurs in multiple malignancies including hepatocellular carcinoma (HCC), lung cancer, and esophageal cancer [18, 19, 20]. Functioning as a core m7G modification subunit, WDR4 critically regulates transcription, mRNA splicing/translation, and immune microenvironment remodeling [21, 22, 23, 24]. The MYC-targeted WDR4 pathway induces CCNB1 translation, promoting HCC proliferation, metastasis, and sorafenib resistance [25]. Moreover, METTL1/WDR4-mediated tRNA m7G modification confers lenvatinib resistance in HCC [26]. Despite these findings, research remains predominantly focused on METTL1 with limited investigation of WDR4 [27]. Here, HCC datasets from TCGA were analyzed to elucidate WDR4’s significance. Utilizing R software (https://cran.r-project.org/bin/windows/Rtools/) and online databases, we assessed correlations between WDR4 expression and clinicopathological features alongside immune cell infiltration, validating differential WDR4 expression in cancerous versus paracancerous tissues via immunohistochemistry alongside PD-L1 and CD68 correlations.

2. Materials and Methods

2.1 Data Collection

The TCGA data portal (https://portal.gdc.cancer.gov/) provided HCC RNA-seq data and clinical information focused on WDR4 expression [28]. Using R software, we integrated and deduplicated WDR4 mRNA expression with clinical data, yielding three hundred sixty-nine HCC samples and fifty adjacent tissue samples. Concurrently, clinical data were collected from thirty-seven patients at Hunan Provincial People’s Hospital (The First Affiliated Hospital of Hunan Normal University) who underwent HCC resection between January 2019 and December 2022 and received postoperative anti-PD-1 monotherapy. Inclusion criteria stipulated: ① All cases were diagnosed with primary HCC based on pathological examination; All cases underwent curative resection for HCC, followed by postoperative monotherapy (PD-1) immunotherapy. ② No targeted therapy, chemotherapy, or radiotherapy was administered before or after surgery; ③ No significant underlying comorbidities, secondary primary tumors, or immune-related diseases were present; ④ The medical records were complete, and follow-up data were comprehensive. Exclusion criteria: ① Patients diagnosed with other types of liver cancer (e.g., intrahepatic cholangiocarcinoma or mixed types); ② Hepatic metastases; ③ Patients who received preoperative antitumor treatments such as radiotherapy, chemotherapy, or local interventions were excluded; ④ Patients who did not receive monotherapy with immunotherapy after surgery, for example, those who received combined immunotherapy and targeted therapy or other antitumor treatments, were also excluded; ⑤ Patients with underlying diseases that severely affected their health were excluded; ⑥ Patients with immune-related underlying diseases were also excluded.

2.2 Gene Expression Analysis, Clinical Characteristics, and Prognostic Analysis

Utilizing HCC WDR4 mRNA and clinical data from TCGA, differential expression analysis was conducted via R’s “Limma” package [29], where genes with |logFC| >1 under the null hypothesis were defined as differentially expressed genes (DEGs): logFC <–1 indicated downregulation in HCC versus adjacent tissues, while logFC >1 indicated upregulation. Immunohistochemistry (IHC) validated DEGs. The pROC package analyzed WDR4 expression, with ggplot2 visualizing receiver operating characteristic (ROC) curves for patient assessment; the area under the curve (AUC) evaluated WDR4’s diagnostic value for HCC, where values approaching 1 denote higher diagnostic efficacy. Xiantao Academic (https://www.xiantaozi.com) further analyzed associations between DEGs and clinicopathological characteristics including Stage, T stage, pathological grade, AFP levels, vascular invasion, and gender. Kaplan-Meier survival curves assessed relationships between WDR4 expression levels and both overall and progression-free survival.

2.3 Analysis of the Relationship Between WDR4 Expression, Immune Infiltration, and Clinically Relevant Immune Markers

The TIMER2.0 database (http://timer.cistrome.org/) generated graphical representations of relationships between WDR4 expression levels and various immune cells, cumulative survival rates, and immune-related cell interactions [30, 31, 32]. Kaplan-Meier survival curve analysis evaluated associations between immune cell infiltration levels and HCC patient prognosis. The GEPIA database [33] (http://gepia.cancer-pku.cn/) analyzed relationships between WDR4 and immune cell molecular markers, including PD-1 (PDCD1: The gene name for PD-1), PD-L1, CTLA-4 and mismatch repair genes MLH1, MSH2, MSH, PMS2.

2.4 Gene Set Enrichment Analysis

The WDR4 RNA sequencing data from HCC patients in the TCGA database were filtered and analyzed using R programming packages. The results were visualized and explored to investigate the various functions and signaling pathways associated with WDR4 co-expressed genes in cancer [34]. R > 0.3 and p < 0.05 were considered statistically significant. The 20 selected WDR4 co-expressed genes were subjected to analysis using the “clusterProfiler” package [35].

2.5 Immunohistochemistry Staining

Under informed consent, specimens from 37 postoperative HCC patients receiving single-agent immunotherapy were collected, including cancerous and adjacent tissues, along with clinical data. Immunohistochemical staining [25, 36] was performed to assess the expression of WDR4, PD-L1, and CD68 in both cancerous and adjacent tissues. The scoring criteria for WDR4 and CD68 were based on staining intensity: a score of 1 (25%), 2 (26%–50%), 3 (51%–75%), or 4 (76%–100%) was assigned according to the positive percentage of tumor-staining cells. Staining intensity was rated as 0 (no staining), 1 (weak staining), 2 (moderate staining), or 3 (strong staining). The staining index was calculated by multiplying the positive cell percentage and staining intensity, resulting in scores ranging from 0 to 12. Scores 6 were considered low expression, while scores >6 were deemed high expression. PD-L1 scoring was performed based on the proportion of positive tumor cells. Typically, 0–1% was considered a negative expression, and >1% was classified as a positive expression (For WDR4 and CD68, positive controls were bile duct cancer tissues; for PD-L1, positive controls were tonsil tissues). Staining samples were independently and blindly reviewed by two experienced pathologists.

2.6 Statistical Analysis

The clinical data were statistically analyzed using R software version 4.2, GraphPad Prism 8.0 (https://www.ddooo.com/softdown/157257.htm), and Xiantao Academic (https://www.xiantaozi.com). The Wilcoxon rank-sum test was employed to assess the difference in WDR4 expression between the two sample groups. An AUC value greater than 0.70 was considered indicative of significant diagnostic value. The Log-rank test was employed to validate the prognostic differences associated with WDR4 in HCC patients, where |r| 0.3 was considered indicative of a correlation. A significance level of p < 0.05 was considered statistically significant, and p < 0.01 was considered highly statistically significant.

3. Results

3.1 WDR4 Exhibits Elevated Expression Levels in HCC Tissues With Excellent Diagnostic Value

In this study, TIMER2.0 database analysis (Fig. 1A) revealed significant WDR4 upregulation in multiple cancers, including bladder, breast, cervical squamous cell carcinoma, cholangiocarcinoma, colon, esophageal, head and neck squamous cell carcinoma, NK/T-cell lymphoma, HCC, lung adenocarcinoma, lung squamous cell carcinoma, pheochromocytoma, prostate, rectal adenocarcinoma, gastric adenocarcinoma, and endometrial carcinoma, with downregulation observed only in thyroid carcinoma. Further validation using TCGA data from 369 HCC and 50 para-carcinoma tissues demonstrated significant WDR4 overexpression in HCC versus para-carcinoma tissues (p < 0.001, Fig. 1B). ROC curve analysis yielded an AUC of 0.778 (95% CI 0.734–0.822, Fig. 1C), indicating substantial diagnostic value of WDR4 for HCC.

Furthermore, immunohistochemical analysis confirmed the nuclear localization of WDR4, as illustrated in Fig. 1D. Notably, WDR4 exhibited high expression in HCC tissues while demonstrating low expression in para-carcinoma tissues. The expression patterns of WDR4 in tumors and adjacent non-cancerous tissues from 37 HCC patients are summarized in Table 1. In HCC tissues, 10 cases (27.03%) exhibited low expression, while 27 cases (72.97%) showed high expression. In para-carcinoma tissues, 1 case (2.70%) displayed high expression, and 36 cases (97.30%) exhibited low expression. These results were statistically significant (χ2 = 38.84, p < 0.001). Overall, WDR4 was highly expressed in HCC tissues that demonstrated excellent diagnostic value for HCC.

3.2 The Relationship Between WDR4 Expression in HCC Tissues and the Clinical Pathological Data of Patients

HCC occurrence and progression involve regulation by multiple genes and diverse factors; to elucidate the relationship between WDR4 and HCC development, Kruskal-Wallis testing analyzed correlations between WDR4 expression levels and patient clinical-pathological data (Fig. 2), revealing significantly increased WDR4 expression in stage III versus stage II and I patients (Fig. 2A), higher levels in T2 and T3 versus T1 stages (Fig. 2B), elevated expression in pathological grades G3 and G4 compared to G1 and G2 (Fig. 2C), increased WDR4 in patients with vascular invasion versus without (Fig. 2D), and higher expression associated with AFP levels >400 ng/mL relative to 400 ng/mL (Fig. 2E), although no significant correlation was observed with gender (Fig. 2F).

Clinical-pathological data from 37 postoperative HCC patients treated with single-agent immunotherapy were analyzed to validate the relationship between WDR4 and clinical-pathological features. The results, as shown in Table 2, indicated a significant correlation between higher WDR4 expression levels and higher pathological grades (p < 0.001), demonstrating a clear statistical difference. However, possibly due to the small sample size, this study did not find a significant association between WDR4 expression and patients’ age (p = 0.395), gender (p = 0.412), stage classification (p = 0.350), T classification (p = 0.407), or vascular invasion (p = 0.503). Despite the relatively limited overall dataset and the potential for selection bias, based on the aforementioned data, we can conclude that WDR4 plays a certain role in the occurrence and development of HCC.

3.3 The Results of GO Enrichment and KEGG Pathway Enrichment Analyses

Using R software, 490 genes co-expressed with WDR4 were identified and analyzed through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment. Results revealed significant roles for WDR4 in hormone metabolism, vitamin D metabolism, and organic acid transport, as well as involvement in apical plasma membrane, basement membrane, and synaptic membrane formation (Fig. 3A). Molecular function analysis indicated primary activities in channel functions, passive transmembrane transporter activities, and signaling receptor activator activities. KEGG analysis demonstrated enrichment in neuroactive ligand-receptor interactions, retinol metabolism, cytochrome P450-mediated drug metabolism pathways, and chemical carcinogenesis-DNA adducts (Fig. 3B).

3.4 Correlation Between WDR4 Expression Level and Infiltration Degree of Immune Cells

To investigate the relationship between WDR4 and immune infiltration, the TIMER database was used to analyze correlations between WDR4 expression and immune cell infiltration in HCC (Fig. 4A). The results revealed a positive correlation between WDR4 expression in HCC and the infiltration levels of CD4+ T cells, B cells, macrophages, dendritic cells, lymphoid progenitor cells, and myeloid-derived suppressor cells (p < 0.001). But no significant correlation was found between WDR4 expression and CD8+ T cell infiltration levels (p > 0.05). These findings underscore the complex interplay between WDR4 expression and immune cell infiltration within the tumor microenvironment.

In pursuit of a deeper understanding of the influence of immune cell infiltration on cumulative survival rates in HCC, this study delved into the relationship between immune-related cells and patients’ overall survival using the TIMER database. Through meticulous analysis, we uncovered intricate connections between immune cell infiltrates and the cumulative survival outcomes of patients afflicted with HCC. As depicted in Fig. 4B, significant correlations between immune cell infiltration and the 120-month cumulative survival rates of HCC patients were revealed. The cumulative survival (120) was positively correlated with CD8+ T cells (p = 0.0408) and the infiltration of macrophages (p < 0.001), but negatively correlated with myelosuppressive cells and tumor-associated fibroblasts (p < 0.05). Notably, no substantial correlations were observed between B cells, CD4+ T cells, dendritic cells, myeloid progenitor cells, and lymphoid progenitor cells with regard to infiltration levels. Thus, we concluded that the WDR4 expression level has a co-relationship with macrophages and myelmarrow pressive cells, thereby affecting the prognosis of HCC.

We utilized the GEPIA database to investigate the interplay between WDR4 and macrophages, as well as clinically relevant immune molecular markers. Comprehensive analysis of WDR4 expression in HCC patients revealed associations with immune cell-related molecular markers. Table 3 shows significant correlations between WDR4 expression in HCC tissues and specific macrophage-related markers. Notably, CCL2 (a tumor-associated macrophage marker) exhibited significant relevance (p = 0.012), while IRF5 (an M1 macrophage marker) showed substantial positive correlation (p < 0.001). No significant correlations were observed with NOS2 (p = 0.290) or COX2 (p = 0.210). Significant positive correlations existed with M2 macrophage markers CD163 (p < 0.001) and MS4A4A (p < 0.001). Fig. 4C demonstrates associations between WDR4 expression and immune-related markers including PD-1, PD-L1, CTLA-4, CD68, and mismatch repair genes MLH1, MSH2, MSH6, PMS2 (all p < 0.001). These findings highlight significant positive correlations between WDR4 expression and immune checkpoints and mismatch repair genes, illuminating its role in immune regulation in HCC.

Our findings demonstrate a significant correlation between WDR4 expression and immune responses in HCC, particularly its substantial association with immune cells like macrophages and clinically relevant immune markers, underscoring WDR4’s pivotal role in HCC immune infiltration and immunological landscape.

3.5 Correlation Between WDR4 Expression and the Macrophage Marker CD68, as Well as PD-L1, in HCC Tissues

To delve deeper into the intricate interplay between WDR4, immune-related markers, and macrophages, we conducted a rigorous Spearman correlation analysis on 37 HCC tissue samples. Clinical and pathological data from patients who underwent single-agent immunotherapy for HCC were collected from Hunan Provincial People’s Hospital (The First Affiliated Hospital of Hunan Normal University). The results unveiled a significant positive correlation between WDR4 expression levels and key macrophage markers, including CD68 and PD-L1. As illustrated in Table 4 and Fig. 5, the expression levels of CD68 and PD-L1 exhibited a similar trend to that of WDR4, in both patients with high and low WDR4 expression. These findings strongly suggest that WDR4 may indeed be positively associated with macrophages and PD-L1. This intricate relationship underscores the potential immunomodulatory role of WDR4 in the context of HCC.

3.6 Elevated WDR4 Expression Correlates With Poor Clinical Prognosis in HCC Patients

To investigate the relationship between WDR4 expression and HCC prognosis, we analyzed overall survival using R software, with Kaplan-Meier curves demonstrating significantly shorter survival in high-WDR4-expression patients versus low-expression counterparts (n = 371, p < 0.001, Fig. 6A); concurrently, progression-free survival was markedly prolonged in low-WDR4-expression patients (n = 371, p < 0.001, Fig. 6B). Through the GEPIA database that PD-L1 expression had no significant correlation with the DFS of patients with liver cancer (n = 181, p = 0.55, Fig. 6C).

In the final validation step, we analyzed data from 37 patients post-immunotherapy with PD-1 inhibitors, where Kaplan-Meier survival analysis of disease-free survival revealed a significant correlation between WDR4 expression levels and patient outcomes after single-agent immunotherapy (Log-rank p < 0.001), consistent with earlier bioinformatics findings (Fig. 7A). Additionally, we investigated PD-L1 expression, which showed no significant DFS correlation (Log-rank p = 0.385, Fig. 7B). These results underscore the predictive power of WDR4 expression for immunotherapeutic interventions, reaffirming its potential as a crucial biomarker for guiding HCC treatment strategies, while collectively, the consistent findings across diverse analyses highlight the robustness and reliability of WDR4 as a prognostic indicator in HCC immunotherapies.

4. Discussion

For its highly malignant nature, insidious progression and frequent recurrence, hepatocellular carcinoma (HCC) demonstrates poor treatment outcomes, underscoring the critical importance of identifying effective diagnostic indicators and therapeutic biomarkers [37]. While alpha-fetoprotein (AFP) represents the most common serological HCC diagnostic marker [38], approximately 30–40% of patients lack AFP elevation. Conversely, nonmalignant conditions including chronic liver disease and reproductive system tumors can elevate AFP levels, limiting its diagnostic specificity [39]. Although studies link AFP to HCC immunotherapy response [40], immune tolerance and other factors preclude its utility as a reliable immunotherapy biomarker [38]. WDR4, a WD repeat protein family member, exhibits overexpression in hepatoblastoma, lung cancer, pancreatic cancer, and head/neck malignancies, implicating it in cancer initiation, progression, metastasis and adverse prognosis [18, 19, 20, 41]. WDR4 cooperates with METTL1 to maintain m7G methyltransferase activity [42], with METTL1/WDR4-mediated m7G tRNA methylation proving pivotal for mouse embryonic stem cell self-renewal and differentiation [17]. WDR4 potentially engages in protein-protein interactions and ligand binding, with triplication in trisomy 21 potentially contributing to Down syndrome phenotypes [16]. Additionally, defects in the WDR4-ARHGAP17-Rac1 signaling pathway may associate with Spearson cerebellar developmental disorders [43]. Ma et al. [19] demonstrated that WDR4/METTL1 knockdown impairs m7G tRNA modification, suppressing proliferation and invasion, whereas overexpression promotes tumorigenesis. This study reveals significantly elevated WDR4 expression in HCC versus adjacent tissues, correlating with metastasis and poor prognosis, positioning WDR4 as an oncogene with diagnostic and adverse prognostic biomarker potential in HCC.

Cancer development is recognized as an evolutionary ecological process [44]. The tumor microenvironment (TME), constituting the milieu for tumor growth, is pivotal in tumor initiation and progression. The TME comprises all non-cancerous host cells and non-cellular components, including fibroblasts and immune cells [45]. Recent studies [46, 47] highlight crucial roles for macrophages and stromal fibroblasts in tumor initiation, with the TME intricately linked to tumor formation, sustenance, and metastasis. Research on the HCC immune microenvironment is advancing, with breakthroughs in targeted angiogenic drugs; combined targeted immunotherapy outperforms sorafenib [48]. Nevertheless, the HCC drug arsenal remains limited, and drug resistance compromises overall treatment efficacy. Immunoinfiltration plays a pivotal role in tumor initiation, progression, metastasis, and drug resistance [18, 19, 20, 41, 49]. WDR4 contributes to renal cancer’s immune microenvironment, where its knockout inhibits proliferation and enhances sunitinib/sorafenib sensitivity in 786-0 and Caki-1 cells [24]. Additionally, WDR4 negatively regulates Promyelocytic Leukemia (PML) via ubiquitination, promoting immune suppression and shaping the TME to facilitate lung cancer progression [49]. Here, we observed positive correlations between WDR4 expression in HCC and infiltration levels of macrophages, tumor-associated fibroblasts, and other immune cells. Further analysis linked immune cell infiltration to cumulative 120-month survival, revealing a negative correlation for macrophages. These findings associate WDR4 with macrophage, tumor-associated fibroblast, and myeloid-derived suppressor cell infiltration in liver cancer, ultimately affecting prognosis.

Immunotherapy has become the fourth pillar of cancer treatment alongside surgery, chemotherapy and radiation [50]. Immune checkpoint inhibitors targeting PD-1, PD-L1, CTLA-4 and mismatch repair genes (MLH1, MSH2, MSH6, PMS2) represent pivotal benchmarks in cancer immunotherapy. However, monotherapy immunotherapy shows inferior efficacy to targeted therapy in first-line HCC treatment [51]. Unlike other solid tumors, studies show no established correlation between tumor cell PD-L1 expression and anti-PD-1 inhibitor response in HCC [12], potentially due to HCC’s complex immune microenvironment. The liver harbors approximately 80% of body macrophages that scan and infiltrate the vasculature [52]. Tumor-associated macrophages (TAMs), the most abundant immune infiltrates in the TME, critically influence HCC through phenotypic diversity [53]. As integral components of the immune microenvironment, macrophages contribute indispensably to innate and adaptive immunity [54]. Although typically tumoricidal, macrophages also exhibit tumor-promoting effects: CD68⁺ MI macrophage-infiltrated hepatoma cells induce PD-L1 overexpression [55], and TAMs induce immunosuppression within the HCC TME [56]. Despite expanding research on HCC macrophages, effective immunotherapy biomarkers remain elusive. Recent pan-cancer analyses reveal aberrant WDR4 expression correlating with immune cell infiltration across tumors [57], while Li et al. [58] found that high expression of m7G core genes is associated with poor prognosis in HCC. Additionally, by constructing an immune escape-related protein-protein interaction (PPI) network, they discovered that (METTL1, WDR4) and 19 mRNA risk signature genes are related to immune escape. This study identifies significant associations between WDR4 and macrophages in HCC, particularly TAMs. Immunohistochemistry confirms significant positive correlations between WDR4 expression and both PD-L1 and CD68 levels. Notably, PD-L1 expression showed no significant correlation with DFS under postoperative immunotherapy monotherapy, whereas elevated WDR4 expression corresponded to shorter DFS in immune monotherapy recipients, suggesting WDR4 as a potential HCC immunotherapy indicator.

5. Conclusion

WDR4 exhibits elevated expression levels within HCC tissues and is associated with immune infiltration, which establishes it as a prognostic biomarker in HCC. Furthermore, the positive correlation observed between WDR4, CD68, and PD-L1 underscores its potential as a guiding factor in immunotherapeutic approaches for HCC.

Availability of Data and Materials

The datasets supporting the findings of this study are available from the corresponding author upon reasonable request. Any further inquiries regarding methods or analysis details will also be provided by the authors upon request.

References

[1]

Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, et al. Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries. CA: A Cancer Journal for Clinicians. 2021; 71: 209–249. https://doi.org/10.3322/caac.21660.

[2]

Bray F, Ferlay J, Soerjomataram I, Siegel RL, Torre LA, Jemal A. Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: A Cancer Journal for Clinicians. 2018; 68: 394–424. https://doi.org/10.3322/caac.21492.

[3]

Sugawara Y, Hibi T. Surgical treatment of hepatocellular carcinoma. Bioscience Trends. 2021; 15: 138–141. https://doi.org/10.5582/bst.2021.01094.

[4]

Izzo F, Granata V, Grassi R, Fusco R, Palaia R, Delrio P, et al. Radiofrequency Ablation and Microwave Ablation in Liver Tumors: An Update. The Oncologist. 2019; 24: e990–e1005. https://doi.org/10.1634/theoncologist.2018-0337.

[5]

Tang W, Chen Z, Zhang W, Cheng Y, Zhang B, Wu F, et al. The mechanisms of sorafenib resistance in hepatocellular carcinoma: theoretical basis and therapeutic aspects. Signal Transduction and Targeted Therapy. 2020; 5: 87. https://doi.org/10.1038/s41392-020-0187-x.

[6]

Benson AB, D’Angelica MI, Abbott DE, Anaya DA, Anders R, Are C, et al. Hepatobiliary Cancers, Version 2.2021, NCCN Clinical Practice Guidelines in Oncology. Journal of the National Comprehensive Cancer Network: JNCCN. 2021; 19: 541–565. https://doi.org/10.6004/jnccn.2021.0022.

[7]

Yamashita T, Kudo M, Ikeda K, Izumi N, Tateishi R, Ikeda M, et al. REFLECT-a phase 3 trial comparing efficacy and safety of lenvatinib to sorafenib for the treatment of unresectable hepatocellular carcinoma: an analysis of Japanese subset. Journal of Gastroenterology. 2020; 55: 113–122. https://doi.org/10.1007/s00535-019-01642-1.

[8]

Qin S, Finn RS, Kudo M, Meyer T, Vogel A, Ducreux M, et al. RATIONALE 301 study: tislelizumab versus sorafenib as first-line treatment for unresectable hepatocellular carcinoma. Future Oncology (London, England). 2019; 15: 1811–1822. https://doi.org/10.2217/fon-2019-0097.

[9]

Wu MT, He SY, Chen SL, Li LF, He ZQ, Zhu YY, et al. Clinical and prognostic implications of pretreatment albumin to C-reactive protein ratio in patients with hepatocellular carcinoma. BMC Cancer. 2019; 19: 538. https://doi.org/10.1186/s12885-019-5747-5.

[10]

Vasan N, Baselga J, Hyman DM. A view on drug resistance in cancer. Nature. 2019; 575: 299–309. https://doi.org/10.1038/s41586-019-1730-1.

[11]

Jin H, Shi Y, Lv Y, Yuan S, Ramirez CFA, Lieftink C, et al. EGFR activation limits the response of liver cancer to lenvatinib. Nature. 2021; 595: 730–734. https://doi.org/10.1038/s41586-021-03741-7.

[12]

El-Khoueiry AB, Sangro B, Yau T, Crocenzi TS, Kudo M, Hsu C, et al. Nivolumab in patients with advanced hepatocellular carcinoma (CheckMate 040): an open-label, non-comparative, phase 1/2 dose escalation and expansion trial. Lancet (London, England). 2017; 389: 2492–2502. https://doi.org/10.1016/S0140-6736(17)31046-2.

[13]

Sangro B, Gomez-Martin C, de la Mata M, Iñarrairaegui M, Garralda E, Barrera P, et al. A clinical trial of CTLA-4 blockade with tremelimumab in patients with hepatocellular carcinoma and chronic hepatitis C. Journal of Hepatology. 2013; 59: 81–88. https://doi.org/10.1016/j.jhep.2013.02.022.

[14]

Qin S, Ren Z, Meng Z, Chen Z, Chai X, Xiong J, et al. Camrelizumab in patients with previously treated advanced hepatocellular carcinoma: a multicentre, open-label, parallel-group, randomised, phase 2 trial. The Lancet. Oncology. 2020; 21: 571–580. https://doi.org/10.1016/S1470-2045(20)30011-5.

[15]

Arvanitakis K, Mitroulis I, Chatzigeorgiou A, Elefsiniotis I, Germanidis G. The Liver Cancer Immune Microenvironment: Emerging Concepts for Myeloid Cell Profiling with Diagnostic and Therapeutic Implications. Cancers. 2023; 15: 1522. https://doi.org/10.3390/cancers15051522.

[16]

Michaud J, Kudoh J, Berry A, Bonne-Tamir B, Lalioti MD, Rossier C, et al. Isolation and characterization of a human chromosome 21q22.3 gene (WDR4) and its mouse homologue that code for a WD-repeat protein. Genomics. 2000; 68: 71–79. https://doi.org/10.1006/geno.2000.6258.

[17]

Lin S, Liu Q, Lelyveld VS, Choe J, Szostak JW, Gregory RI. Mettl1/Wdr4-Mediated m7G tRNA Methylome Is Required for Normal mRNA Translation and Embryonic Stem Cell Self-Renewal and Differentiation. Molecular Cell. 2018; 71: 244–255.e5. https://doi.org/10.1016/j.molcel.2018.06.001.

[18]

He S, Zhu J, Xiao Z, Liu J, Zhang J, Li Y, et al. WDR4 gene polymorphisms increase hepatoblastoma susceptibility in girls. Journal of Cancer. 2022; 13: 3342–3347. https://doi.org/10.7150/jca.76255.

[19]

Ma J, Han H, Huang Y, Yang C, Zheng S, Cai T, et al. METTL1/WDR4-mediated m7G tRNA modifications and m7G codon usage promote mRNA translation and lung cancer progression. Molecular Therapy: the Journal of the American Society of Gene Therapy. 2021; 29: 3422–3435. https://doi.org/10.1016/j.ymthe.2021.08.005.

[20]

Han H, Yang C, Ma J, Zhang S, Zheng S, Ling R, et al. N7-methylguanosine tRNA modification promotes esophageal squamous cell carcinoma tumorigenesis via the RPTOR/ULK1/autophagy axis. Nature Communications. 2022; 13: 1478. https://doi.org/10.1038/s41467-022-29125-7.

[21]

Song B, Tang Y, Chen K, Wei Z, Rong R, Lu Z, et al. m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Bioinformatics (Oxford, England). 2020; 36: 3528–3536. https://doi.org/10.1093/bioinformatics/btaa178.

[22]

Ruiz-Arroyo VM, Raj R, Babu K, Onolbaatar O, Roberts PH, Nam Y. Structures and mechanisms of tRNA methylation by METTL1-WDR4. Nature. 2023; 613: 383–390. https://doi.org/10.1038/s41586-022-05565-5.

[23]

Enroth C, Poulsen LD, Iversen S, Kirpekar F, Albrechtsen A, Vinther J. Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing. Nucleic Acids Research. 2019; 47: e126. https://doi.org/10.1093/nar/gkz736.

[24]

Chen M, Nie Z, Gao Y, Cao H, Zheng L, Guo N, et al. m7G regulator-mediated molecular subtypes and tumor microenvironment in kidney renal clear cell carcinoma. Frontiers in Pharmacology. 2022; 13: 900006. https://doi.org/10.3389/fphar.2022.900006.

[25]

Xia P, Zhang H, Xu K, Jiang X, Gao M, Wang G, et al. MYC-targeted WDR4 promotes proliferation, metastasis, and sorafenib resistance by inducing CCNB1 translation in hepatocellular carcinoma. Cell Death & Disease. 2021; 12: 691. https://doi.org/10.1038/s41419-021-03973-5.

[26]

Huang M, Long J, Yao Z, Zhao Y, Zhao Y, Liao J, et al. METTL1-Mediated m7G tRNA Modification Promotes Lenvatinib Resistance in Hepatocellular Carcinoma. Cancer Research. 2023; 83: 89–102. https://doi.org/10.1158/0008-5472.CAN-22-0963.

[27]

Han WY, Wang J, Zhao J, Zheng YM, Chai XQ, Gao C, et al. WDR4/TRIM28 is a novel molecular target linked to lenvatinib resistance that helps retain the stem characteristics in hepatocellular carcinomas. Cancer Letters. 2023; 568: 216259. https://doi.org/10.1016/j.canlet.2023.216259.

[28]

Liu J, Sun G, Pan S, Qin M, Ouyang R, Li Z, et al. The Cancer Genome Atlas (TCGA) based m6A methylation-related genes predict prognosis in hepatocellular carcinoma. Bioengineered. 2020; 11: 759–768. https://doi.org/10.1080/21655979.2020.1787764.

[29]

Colaprico A, Silva TC, Olsen C, Garofano L, Cava C, Garolini D, et al. TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Nucleic Acids Research. 2016; 44: e71. https://doi.org/10.1093/nar/gkv1507.

[30]

Li T, Fu J, Zeng Z, Cohen D, Li J, Chen Q, et al. TIMER2.0 for analysis of tumor-infiltrating immune cells. Nucleic Acids Research. 2020; 48: W509–W514. https://doi.org/10.1093/nar/gkaa407.

[31]

Zhang W, Fu J, Du J, Liu X, Cheng J, Wei C, et al. A disintegrin and metalloproteinase domain 10 expression inhibition by the small molecules adenosine, cordycepin and N6, N6-dimethyladenosine and immune regulation in malignant cancers. Frontiers in Immunology. 2024; 15: 1434027. https://doi.org/10.3389/fimmu.2024.1434027.

[32]

Liu S, Yang L, Fu J, Li T, Zhou B, Wang K, et al. Comprehensive analysis, immune, and cordycepin regulation for SOX9 expression in pan-cancers and the matched healthy tissues. Frontiers in Immunology. 2023; 14: 1149986. https://doi.org/10.3389/fimmu.2023.1149986.

[33]

Tang Z, Kang B, Li C, Chen T, Zhang Z. GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis. Nucleic Acids Research. 2019; 47: W556–W560. https://doi.org/10.1093/nar/gkz430.

[34]

Tilford CA, Siemers NO. Gene set enrichment analysis. Methods Mol Biol. 2009;563:99–121. https://doi.org/10.1007/978-1-60761-175-2_6.

[35]

Yu G, Wang LG, Han Y, He QY. clusterProfiler: an R package for comparing biological themes among gene clusters. Omics: a Journal of Integrative Biology. 2012; 16: 284–287. https://doi.org/10.1089/omi.2011.0118.

[36]

Wei F, Zhang T, Deng SC, Wei JC, Yang P, Wang Q, et al. PD-L1 promotes colorectal cancer stem cell expansion by activating HMGA1-dependent signaling pathways. Cancer Letters. 2019; 450: 1–13. https://doi.org/10.1016/j.canlet.2019.02.022.

[37]

Trevisani F, Garuti F, Neri A. Alpha-fetoprotein for Diagnosis, Prognosis, and Transplant Selection. Seminars in Liver Disease. 2019; 39: 163–177. https://doi.org/10.1055/s-0039-1677768.

[38]

Hu X, Chen R, Wei Q, Xu X. The Landscape Of Alpha Fetoprotein In Hepatocellular Carcinoma: Where Are We? International Journal of Biological Sciences. 2022; 18: 536–551. https://doi.org/10.7150/ijbs.64537.

[39]

Galle PR, Foerster F, Kudo M, Chan SL, Llovet JM, Qin S, et al. Biology and significance of alpha-fetoprotein in hepatocellular carcinoma. Liver International: Official Journal of the International Association for the Study of the Liver. 2019; 39: 2214–2229. https://doi.org/10.1111/liv.14223.

[40]

Spahn S, Roessler D, Pompilia R, Gabernet G, Gladstone BP, Horger M, et al. Clinical and Genetic Tumor Characteristics of Responding and Non-Responding Patients to PD-1 Inhibition in Hepatocellular Carcinoma. Cancers. 2020; 12: 3830. https://doi.org/10.3390/cancers12123830.

[41]

Chen J, Li K, Chen J, Wang X, Ling R, Cheng M, et al. Aberrant translation regulated by METTL1/WDR4-mediated tRNA N7-methylguanosine modification drives head and neck squamous cell carcinoma progression. Cancer Communications (London, England). 2022; 42: 223–244. https://doi.org/10.1002/cac2.12273.

[42]

Alexandrov A, Martzen MR, Phizicky EM. Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA. RNA (New York, N.Y.). 2002; 8: 1253–1266. https://doi.org/10.1017/s1355838202024019.

[43]

Wu PR, Chiang SY, Midence R, Kao WC, Lai CL, Cheng IC, et al. Wdr4 promotes cerebellar development and locomotion through Arhgap17-mediated Rac1 activation. Cell Death & Disease. 2023; 14: 52. https://doi.org/10.1038/s41419-022-05442-z.

[44]

Merlo LMF, Pepper JW, Reid BJ, Maley CC. Cancer as an evolutionary and ecological process. Nature Reviews. Cancer. 2006; 6: 924–935. https://doi.org/10.1038/nrc2013.

[45]

Xiao Y, Yu D. Tumor microenvironment as a therapeutic target in cancer. Pharmacology & Therapeutics. 2021; 221: 107753. https://doi.org/10.1016/j.pharmthera.2020.107753.

[46]

Li M, Jiang P, Wei S, Wang J, Li C.The role of macrophages-mediated communications among cell compositions of tumor microenvironment in cancer progression. Frontiers in immunology. 2023; 14: 1113312. https://doi.org/10.3389/fimmu.2023.1113312.

[47]

Orecchioni M, Ghosheh Y, Pramod AB, Ley K. Macrophage Polarization: Different Gene Signatures in M1(LPS+) vs. Classically and M2(LPS-) vs. Alternatively Activated Macrophages. Frontiers in Immunology. 2019; 10: 1084. https://doi.org/10.3389/fimmu.

[48]

Finn RS, Qin S, Ikeda M, Galle PR, Ducreux M, Kim TY, et al. Atezolizumab plus Bevacizumab in Unresectable Hepatocellular Carcinoma. The New England Journal of Medicine. 2020; 382: 1894–1905. https://doi.org/10.1056/NEJMoa1915745.

[49]

Dawson MA, Kouzarides T. Cancer epigenetics: from mechanism to therapy. Cell. 2012; 150: 12–27. https://doi.org/10.1016/j.cell.2012.06.013.

[50]

Liu J, Chen Z, Li Y, Zhao W, Wu J, Zhang Z. PD-1/PD-L1 Checkpoint Inhibitors in Tumor Immunotherapy. Frontiers in Pharmacology. 2021; 12: 731798. https://doi.org/10.3389/fphar.2021.731798.

[51]

Yau T, Park JW, Finn RS, Cheng AL, Mathurin P, Edeline J, et al. Nivolumab versus sorafenib in advanced hepatocellular carcinoma (CheckMate 459): a randomised, multicentre, open-label, phase 3 trial. The Lancet. Oncology. 2022; 23: 77–90. https://doi.org/10.1016/S1470-2045(21)00604-5.

[52]

Tacke F, Zimmermann HW. Macrophage heterogeneity in liver injury and fibrosis. Journal of Hepatology. 2014; 60: 1090–1096. https://doi.org/10.1016/j.jhep.2013.12.025.

[53]

Wang T, Dai L, Shen S, Yang Y, Yang M, Yang X, et al. Comprehensive Molecular Analyses of a Macrophage-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and the LASSO Algorithm. Frontiers in Immunology. 2022; 13: 843408. https://doi.org/10.3389/fimmu.2022.843408.

[54]

Heymann F, Tacke F. Immunology in the liver–from homeostasis to disease. Nature Reviews. Gastroenterology & Hepatology. 2016; 13: 88–110. https://doi.org/10.1038/nrgastro.2015.200.

[55]

Zong Z, Zou J, Mao R, Ma C, Li N, Wang J, et al. M1 Macrophages Induce PD-L1 Expression in Hepatocellular Carcinoma Cells Through IL-1β Signaling. Frontiers in Immunology. 2019; 10: 1643. https://doi.org/10.3389/fimmu.2019.01643.

[56]

Wang YT, Chen J, Chang CW, Jen J, Huang TY, Chen CM, et al. Ubiquitination of tumor suppressor PML regulates prometastatic and immunosuppressive tumor microenvironment. The Journal of Clinical Investigation. 2017; 127: 2982–2997. https://doi.org/10.1172/JCI89957.

[57]

Zeng H, Xu S, Xia E, Hirachan S, Bhandari A, Shen Y. Aberrant expression of WDR4 affects the clinical significance of cancer immunity in pan-cancer. Aging. 2021; 13: 18360–18375. https://doi.org/10.18632/aging.203284.

[58]

Li R, Liu X, Deng K, Wang X. M7G methylated core genes (METTL1 and WDR4) and associated RNA risk signatures are associated with prognosis and immune escape in HCC. BMC Medical Genomics. 2023; 16: 179. https://doi.org/10.1186/s12920-023-01614-8.

Funding

Hunan Province department unit fund(2023JJ60019)

PDF (12360KB)

0

Accesses

0

Citation

Detail

Sections
Recommended

/