A historical review of hybrid rice breeding

Abstract

The development of germplasm resources and advances in breeding methods have led to steady increases in yield and quality of rice (Oryza sativa L.). Three milestones in the recent history of rice breeding have contributed to these increases: dwarf rice breeding, hybrid rice breeding, and super rice breeding. On the 50th anniversary of the success of three-line hybrid rice, we highlight important scientific discoveries in rice breeding that were made by Chinese scientists and summarize the broader history of the field. We discuss the strategies that could be used in the future to optimize rice breeding further in the hope that China will continue to play a leading role in international rice breeding.

Keywords

Chinese experience / dwarf breeding / hybrid rice breeding / super rice breeding

References

[1] Asano, K., Takashi, T., Miura, K., Qian, Q., Kitano, H., Matsuoka, M., and Ashikari, M. (2007). Genetic and molecular analysis of utility of sd1 alleles in rice breeding. Breeding Sci. 57: 53-58.

[2] Bai, D.L. (1992). Research, selection and breeding of light and temperature sensitive nuclear sterile lines in rice. Crop Res. S2: 34-37.

[3] Deng, H.F., Shu, F.B., and Yuan, D.Y. (1999). An overview of research and utilization of Annong S-1. Hybrid Rice 14: 1-3.

[4] Deng, Q.Y. (2005). Breeding of the PTGMS line Y58S with wide adaptability in rice. Hybrid Rice 20: 15-18.

[5] Ding, J., Lu, Q., Ouyang, Y., Mao, H., Zhang, P., Yao, J., Xu, C., Li, X., Xiao, J., and Zhang, Q. (2012). A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice. Proc. Natl. Acad. Sci. U.S.A. 109: 2654-2659.

[6] Fu, C.J., Hu, X.C., Qin, P., Fu, X.X., Yang, G., Liu, S.S., and Yang, Y.Z. (2017). Breeding of high quality, disease-resistant, suitable and high-yield two-line hybrid rice Jingliangyou 534. Food Crop 3: 221-224.

[7] Fujian Science and Technology of Rice and Wheat (2018). The cumulative promotion and application area of super rice in China has reached 1.35 billion mu. Fujian Sci. Tech. Rice Wheat 36: 60.

[8] Hong, C.L., Hong, Q.Y., and Deng, Y.T. (2005). Good rice varieties, Aijiao Nante and Hongmei Zao. Zaopu commune in Chaoyang county, Guangdong Province.

[9] Hu, J., Wang, K., Huang, W., Liu, G., Gao, Y., Wang, J., Huang, Q., Ji, Y., Qin, X., Wan, L., et al. (2012). The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162. Plant Cell 24: 109-122.

[10] Huang, Y.X. (2001). Ecological breeding project for Chinese super rice with semi dwarf stem, early growth and deep roots, super high yield, and extra high quality. Guang Dong Agri. Sci. 3: 2-6.

[11] Huang, W.C., Hu, J., Zhu, R.S., Li, S.Q., Wang, K., Yu, J.H., Li, Y.S., Zhang, Z.H., and Zhu, Y.G. (2012). Research and development of the HL-type cytoplasmic male sterility rice. Sci. China Life Sci. 42: 689-698.

[12] Huang, W., Yu, C., Hu, J., Wang, L., Dan, Z., Zhou, W., He, C., Zeng, Y., Yao, G., Qi, J., et al. (2015). Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility. Proc. Natl. Acad. Sci. U.S.A. 112: 14984-14989.

[13] Khanday, I., Skinner, D., Yang, B., Mercier, R., and Sundaresan, V. (2019). A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds. Nature 565: 91-95.

[14] Kuroha, T., Nagai, K., Gamuyao, R., Wang, D.R., Furuta, T., Nakamori, M., Kitaoka, T., Adachi, K., Minami, A., Mori, Y., et al. (2018). Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science 361: 181-186.

[15] Li, L.J., Zhou, H.P., Zhan, X.D., Zhuang, J.Y., Cheng, S.H., and Cao, L.Y. (2007). Mapping of rice fertility-restoring gene for Indonesian Paddy-type cytoplasmic male sterility in a restorer line R68. Chin. J. Rice Sci. 21: 547-549.

[16] Li, S.F. (1997). Breeding, utilization and genetic study on G-type and D-type hybrid rice. Hybrid Rice S1: 1-25.

[17] Li, S.H., Liu, W., Hu, X.M., and Zhao, L.X. (2023). The history of rice breeding in modern China. Jiangsu Agri. Sci. 51: 20-26.

[18] Li, T.Y., Wu, C.H., and Li, D.G. (2011). Performance and cultural techniques of YLiangyou 1 in the demonstration of the planting pattern of soybean-super rice at Jiahe, Hunan. Hybrid Rice 26: 42-43.

[19] Lin, Y.Z. (1988). Breeding of japonica rice varieties through the application of indica-japonica hybridization breeding. Zhejiang Agri. Sci. 4: 151-155.

[20] Lin, S.C., and Min, S.K. (1991). Chinese rice varieties and their genealogy. Shanghai: Shanghai Scientific and Technical Press.

[21] Liu, C.L., Wang, J., Lu, H.W., Huang, Y., Yan, H.J., Liang, H., Wang, C., and Wang, K.J. (2024). Engineering synthetic apomixis in different hybrid rice varieties using the Fix strategy. New Crops. 1: 100003.

[22] Lu, Z.M., and Xu, B.Q. (2010). On significance of heterotic group theory in hybrid rice breeding. Rice Sci. 17: 94-98.

[23] Luo, X.H. (2022). My fifty years of hybrid rice research experience with Mr. Yuan Longping. Hybrid Rice 37: 262-265.

[24] Ma, R.R., Wang, X.Y., Lu, Y.F., Zhou, H.C., Cai, K.F., Li, X.N., and Zhang, Z.Y. (2010). Breeding and application of late japonica CMS line Yonggeng 2A and its late indica-japonica hybrid rice combinations. Hybrid Rice 25: 185-189.

[25] Mieulet, D., Jolivet, S., Rivard, M., Cromer, L., Vernet, A., Mayonove, P., Pereira, L., Droc, G., Courtois, B., Guiderdoni, E., et al. (2016). Turning rice meiosis into mitosis. Cell Res. 26: 1242-1254.

[26] National Bureau of Statistics of China. (2020). China statistical yearbook. Beijing: China Statistics Press.

[27] National Rice Data Center. (2023). Available from:

[28] National Rice Research Collaboration Site Meeting. (1973). Selected compilation of materials for the National Rice Research Cooperation Conference. Wuxi: Wuxi County People's Printing House.

[29] Newsletter About Work in Rural Areas (2020). Super rice yield exceeds 1,000 kilograms per mu. Newsletter Work Rural Areas 24: 13.

[30] Pan, X.G., Chen, C.R., Kuang, Y.X., and Liu, L.C. (1980). Genetic analysis of the growth period of “Wild Abortion”-type hybrid rice. Jiangxi Agri. Sci. Tech. 7: 1-4.

[31] Peng, S., Cassman, K.G., Virmani, S.S., Sheehy, J., and Khush, G.S. (1999). Yield potential trends of tropical rice since the release of IR8 and the challenge of increasing rice yield potential. Crop Sci. 39: 1552-1559.

[32] Peng, X., Wang, K., Hu, C., Zhu, Y., Wang, T., Yang, J., Tong, J., Li, S., and Zhu, Y. (2010). The mitochondrial gene orfH79 plays a critical role in impairing both male gametophyte development and root growth in CMS-Honglian rice. BMC Plant Biol. 10: 125.

[33] Ren, G.J., Yan, L.A., and Xie, H.A. (2016). Retrospective and perspective on indica three-line hybrid rice breeding research in China. Chin. Sci. Bull. 61: 3748-3760.

[34] Sasaki, A., Ashikari, M., Ueguchi-Tanaka, M., Itoh, H., Nishimura, A., Swapan, D., Ishiyama, K., Saito, T., Kobayashi, M., Khush, G.S., et al. (2002). Green revolution: A mutant gibberellin-synthesis gene in rice. Nature 416: 701-702.

[35] Shi, C.J., Na, B.Z., and Li, W.H. (1987). Fertility studies on Dian 1 type “Diannong-1” sterile line. J. Yunnan Agri. Univ. 2: 97-100.

[36] Song, M.Q., Wang, W.M., Ji, C., Li, S.N., Liu, W., Hu, X.Y., Feng, A.H., Ruan, S., Du, S.Y., Wang, H., et al. (2023). Simultaneous production of high-frequency synthetic apomixis with high fertility and improved agronomic traits in hybrid rice. Mol. Plant 17: 4-7.

[37] Tan, C.L., Wang, B.H., Xue, L.P., Cao, Y.X., Li, Z.Q., Wang, N.Y., Dai, Z.Y., Li, Y.H., Liu, X.B., and Cao, K. (2012). High yield technology of mechanized seed production of two-line hybrid rice Yangliangyou 6. Jiangsu Agri. Sci. 40: 74-76.

[38] Tang, H., Luo, D., Zhou, D., Zhang, Q., Tian, D., Zheng, X., Chen, L., and Liu, Y.G. (2014). The rice restorer Rf4 for wild-abortive cytoplasmic male sterility encodes a mitochondrial-localized PPR protein that functions in reduction of WA352 transcripts. Mol. Plant 7: 1497-1500.

[39] Tang, L. (2008). Analysis of factors related to high-yield crops in promoting ethnic economic integration: An example of the introduction of Aizizhan rice by overseas Chinese in Rongxian county. Overseas Chin. J. Bagui 2: 11-16.

[40] Tu, C.Y., and Wang, F. (2019). Sixty years’ devotion to Green Revolution and a life time commitment to food security-review on the academic achievements of Huang Yaoxiang, father of semi-dwarf rice breeding. Guangdong Agri. Sci. 46: 1-7.

[41] Vernet, A., Meynard, D., Lian, Q., Mieulet, D., Gibert, O., Bissah, M., Rivallan, R., Autran, D., Leblanc, O., Meunier, A.C., et al. (2022). High-frequency synthetic apomixis in hybrid rice. Nat. Commun. 13: 7963.

[42] Wang, C., Liu, Q., Shen, Y., Hua, Y., Wang, J., Lin, J., Wu, M., Sun, T., Cheng, Z., Mercier, R., et al. (2019). Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes. Nat. Biotechnol. 37: 283-286.

[43] Wang, W.S., Gao, Y.M., Xu, J.L., and Li, Z.K. (2018). “Green Super Rice” achieving sustainable development of agricultural production in Asian and African countries. Chin. Bull. Life Sci. 30: 1090-1099.

[44] Wang, Y., Shang, L., Yu, H., Zeng, L., Hu, J., Ni, S., Rao, Y., Li, S., Chu, J., Meng, X., et al. (2020). A strigolactone biosynthesis gene contributed to the green revolution in rice. Mol. Plant 13: 923-932.

[45] Wang, Z.Y., and Shen, M. (2017). Historical development of Li Zhengyou's creation of Dian-type hybrid rice. Food Safety Guide 23: 76.

[46] Wei, X., Liu, C., Chen, X., Lu, H., Wang, J., Yang, S., and Wang, K. (2023). Synthetic apomixis with normal hybrid rice seed production. Mol. Plant 16: 489-492.

[47] Woo, M.O., Ham, T.H., Ji, H.S., Choi, M.S., Jiang, W., Chu, S.H., Piao, R., Chin, J.H., Kim, J.A., Park, B.S., et al. (2008). Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.). Plant J. 54: 190-204.

[48] Wu, Z.X. (2013). High-yielding cultural techniques of Liangyou Peijiu grown as ratoon rice. Hybrid Rice 28: 55-56.

[49] Xie, H.A. (2005). Theory and practice of Shanyou 63 breeding. Beijing: China Agriculture Press.

[50] Xie, H.A., Zheng, J.T., and Zhang, S.G. (1987). Rice breeding for the hybrid combination of Shanyou 63 and its restorer line Minghui 63. J. Fujian Acad. Agri. Sci. 2: 32-38.

[51] Xie, J., Wang, W., Yang, T., Zhang, Q., Zhang, Z., Zhu, X., Li, N., Zhi, L., Ma, X., Zhang, S., et al. (2022). Large-scale genomic and transcriptomic profiles of rice hybrids reveal a core mechanism underlying heterosis. Genome Biol. 23: 264.

[52] Xu, C.C., Ji, L., Chen, Z.D., and Fang, F.P. (2023). Analysis of China's rice industry in 2022 and the outlook for 2023. China Rice 29: 1-4.

[53] Xu, G.F., Zou, D.J., and Chen, M.Y. (2010). High-yielding seed production techniques for two-line super hybrid rice Fengliangyou 4. Hybrid Rice 25: 33-34.

[54] Xue, R. (2008). Yan Long'an -48 seeds rewrite the history of hybrid rice, Beijing. Agriculture 20: 43.

[55] Yang, Z.Y., Chen, Q.B., Chen, R.F., Su, Z.J., Tian, G.Q., Jia, B.Q., Tong, J.X., and Wang, J.Q. (1982). Breeding of KENG type hybrid rice Liyu 57. Sci. Agric. Sin. 1: 38-42.

[56] Yang, Z.Y., Zhang, G.L., Zhang, C.H., Chen, J.J., Wang, H.Q., Zhang, J.J., and Yan, Z. (2002). Breeding of fine quality P/TGMS line Guangzhan63S in medium Indica rice. Hybrid Rice 17: 4-6.

[57] Yang, Z.Y., Zhang, Z.X., Wei, Y.L., Zhao, Y.C., and Gao, Y. (1998). Breeding and characteristics of japonica type wide compatibility line C418. Hybrid Rice 3: 33-34.

[58] Yu, J., Han, J., Kim, Y.J., Song, M., Yang, Z., He, Y., Fu, R., Luo, Z., Hu, J., Liang, W., et al. (2017). Two rice receptor-like kinases maintain male fertility under changing temperatures. Proc. Natl. Acad. Sci. U.S.A. 114: 12327-12332.

[59] Yu, S., Ali, J., Zhang, C., Li, Z., and Zhang, Q. (2020). Genomic breeding of green super rice varieties and their deployment in Asia and Africa. Theor. Appl. Genet. 133: 1427-1442.

[60] Yuan, L.P. (1966). Rice male sterility. Chin. Sci. Bull. 4: 185-188.

[61] Yuan, L.P. (1977). Practice and theory of hybrid rice cultivation. Sci. Agric. Sin. 1: 27-31.

[62] Yuan, L.P. (1987). Conception of breeding strategy for hybrid rice. Hybrid Rice 1: 1-3.

[63] Yunnan Agricultural Science and Technology. (1974). Overview of the progress of rice selection and breeding of “three-line” in Yunnan province. Yunnan Agric. Sci. Technol. 1: 26-27.

[64] Zhang, X.C. (1982). A study on the genetic theory of male sterility in indica-type “three-line” hybrid rice. J. Guangxi Agri. College 1: 39-48.

[65] Zhao, J., Yin, H.X., Zhu, C.Q., Liu, D.F., Fang, F.P., Shen, Z.C., and Ying, J.F. (2022). The most remarkable varieties in 100 year's rice breeding in China. China Rice 28: 66-73.

[66] Zhao, Z., Ding, Z., Huang, J., Meng, H., Zhang, Z., Gou, X., Tang, H., Xie, X., Ping, J., Xiao, F., et al. (2023). Copy number variation of the restorer Rf4 underlies human selection of three-line hybrid rice breeding. Nat. Commun. 14: 7333.

[67] Zheng, X.M., and Qian, Q. (2024). Unveiling a half-century mystery of molecular bases for three-line hybrid rice breeding system. J. Integr. Plant Biol. 66: 3-6.

[68] Zhou, G.X., Zhang, G.L., and Xu, X.L. (2007). Fengliangyou 4, a new medium Indica hybrid rice combination. Hybrid Rice 22: 91-92.

[69] Zhou, H., Liu, Q., Li, J., Jiang, D., Zhou, L., Wu, P., Lu, S., Li, F., Zhu, L., Liu, Z., et al. (2012). Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA. Cell Res. 22: 649-660.

[70] Zhou, H., Zhou, M., Yang, Y., Li, J., Zhu, L., Jiang, D., Dong, J., Liu, Q., Gu, L., Zhou, L., et al. (2014). RNase Z(S1) processes UbL40 mRNAs and controls thermosensitive genic male sterility in rice. Nat. Commun. 5: 4884.

[71] Zou, J.S., Lu, C.G., Hu, N., Li, Y.Z., and Yao, K.M. (2008). Studies on ecological adaptability and suitable planting area of a two-line hybrid rice, Liangyoupeijiu. Sci. Agric. Sin. 41: 3563-3572.

[72] Zou, J.S., Lv, C.G., Wang, C.L., Zheng, K.W., Zong, S.Y., Zhao, L., and Sun, Y.H. (2003). Breeding of two-line hybrid rice variety Liangyoupeijiu and preliminary studies on its cultivation characters. Sci. Agric. Sin. 36: 869-872.

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