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Proteomics characteristics of rice leaves in response to environmental factors

  • Sining KANG 1 ,
  • Sixue CHEN 2 ,
  • Shaojun DAI , 1
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  • 1. Key Laboratory of Forestry Tree Genetics Improvement and Biotechnology, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China
  • 2. Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL 32610, USA

Received date: 11 Jan 2010

Accepted date: 26 Jan 2010

Published date: 01 Jun 2010

Copyright

2014 Higher Education Press and Springer-Verlag Berlin Heidelberg

Abstract

Rice is an important food crop worldwide. Its productivity has been influenced by various abiotic and biotic factors including temperature, drought, salt, microbe, ozone, hormone and glyphosate. The responses of plants to stress are regulated by multiple signaling pathways, and the mechanisms of leaf growth and development in response to stress remain unclear to date. Recently, proteomics studies have provided new evidence for better understanding the mechanisms. The proteins in response to different stress conditions are mainly involved in photosynthesis, signal transduction, transcription, protein synthesis and destination, defense response, cytoskeleton, energy, cell wall and other metabolism. In addition, some stress type-specific proteins have been identified, such as small heat shock proteins under temperature stress, S-like RNase homolog and actin depolymerizing factor under drought stress, ascorbate peroxidase and lipid peroxidation under salt stress, probenazole-inducible protein and rice pathogenesis-related proteins under blast fungus. Many of the proteins including ribulose-1, 5-bisphosphate carboxylase/oxygenase (RuBisCO), molecular chaperones, antioxidases and S-adenosylmethionine synthetase play very important roles in leaves. This paper reviews the proteomic characterization of rice leaves in response to various environmental factors.

Cite this article

Sining KANG , Sixue CHEN , Shaojun DAI . Proteomics characteristics of rice leaves in response to environmental factors[J]. Frontiers in Biology, 2010 , 5(3) : 246 -254 . DOI: 10.1007/s11515-010-0027-4

Acknowledgements

The project was supported by the Program for New Century Excellent Talents in Universities (No. NECT-06-0327), National Programs for High Technology Research and Development (No. 2007AA021405), and Fundamental Research Funds for the Central Universities (No. DL09DA03).
1
Abbasi F M, Komatsu S (2004). A proteomic approach to analyze salt-responsive proteins in rice leaf sheath. Proteomics, 4: 2072–2081

DOI

2
Agrawal G K, Jwa N, Rakwal R (2002a). A pathogen-induced novel rice (Oryza sativa L.) gene encodes a putative protein homologous to type II glutathione S-transferases. Plant Sci, 163: 1153–1160

DOI

3
Agrawal G K, Rakwal R, Yonekura M, Kubo A, Saji H (2002b). Proteome analysis of differentially displayed proteins as a tool for investigating ozone stress in rice (Oryza sativa L.) seedlings. Proteomics, 2: 947–959

DOI

4
Ahsan N, Lee D G, Kim K H, Alam I, Lee S H, Lee K Won, Lee H, Lee B H (2010). Analysis of arsenic stress-induced differentially expressed proteins in rice leaves by two-dimensional gel electrophoresis coupled with mass spectrometry. Chemosphere, 78: 224–231

DOI

5
Ahsan N, Lee D G, Lee K W, Alam I, Lee S H, Bahk J D, Lee B H (2008). Glyphosate-induced oxidative stress in rice leaves revealed by proteomic approach. Plant Physiol Biochem, 46: 1062–1070

DOI

6
Bokhari S A, Wan X, Yang Y, Zhou L, Tang W, Liu J (2007). Proteomic response of rice seedling leaves to elevated CO2 levels. J Proteome Res, 6: 4624–4633

DOI

7
Borden K L, Freemont P S (1996). The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol, 6: 395–401

DOI

8
Borsani O, Diaz P, Agius M F, Valpuesta V, Monza J (2001). Water stress generates an oxidative stress through the induction of a specific Cu/Zn superoxide dismutase in Lotus corniculatus leaves. Plant Sci, 161: 757–763

9
Chaoui A, Mazhoudi S, Ghorbal M H, Ferjani E E (1997). Cadmium and zinc induction of lipid peroxidation and effects on antioxidant enzyme activities in bean (Phaseolus vulgaris L.). Plant Sci, 127: 139–147

DOI

10
Cho K, Shibato J, Agrawal G K, Jung Y H, Kubo A, Jwa N S, Tamogami S, Satoh K, Kikuchi S, Higashi T, Kimura S, Saji H, Tanaka Y, Iwahashi H, Masuo Y, Rakwal R (2008). Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling. J Proteome Res, 7: 2980–2998

DOI

11
Cui S, Huang F, Wang J, Ma X, Cheng Y, Liu J (2005). A proteomic analysis of cold stress responses in rice seedlings. Proteomics, 5: 3162–3172

DOI

12
Dai S, Li L, Chen T, Chong K, Xue Y, Wang T (2006). Proteomic analyses of Oryza sativa mature pollen reveal novel proteins associated with pollen germination and tube growth. Proteomics, 6: 2504–2529

DOI

13
Desimone M, Henke A, Wagner E (1996). Oxidative stress induces partial degradation of the large subunit of ribulose-1, 5-bisphosphate carboxylase/oxygenase in isolated chloroplasts of barley. Plant Physiol, 111: 789–796

14
Dooki A D, Mayer-Posner F J, Askari H, Zaiee A A, Salekdeh G H (2006). Proteomic responses of rice young panicles to salinity. Proteomics, 6: 6498–6507

DOI

15
Edwards R, Dixon D P (2005). Plant glutathione transferases. Methods Enzymol, 401: 169–186

DOI

16
Edwards R, Dixon D P, Walbot V (2000). Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health. Trends Plant Sci, 5: 193–198

DOI

17
Feng Y W, Komatsu S, Furukawa T, Koshiba T, Kohno Y (2008). Proteome analysis of proteins responsive to ambient and elevated ozone in rice seedlings. Agri Eco Environ, 125: 255–265

DOI

18
Ge C, Wang Z, Wan Di, Ding Y, Wang Y, Shang Q, Luo S (2009). Proteomic study for responses to cadmium stress in rice seedlings. Rice Science, 16: 33–44

DOI

19
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S (2002). A draft sequence of rice genome (Oryza sativa L. ssp. japonica). Science, 296: 92–100

DOI

20
Hajduch M, Rakwal R, Agrawal G K, Yonekura M, Pretova A (2001). High-resolution two-dimensional electrophoresis separation of proteins from metal-stressed rice (Oryza sativa L.) leaves: Drastic reductions/fragmentation of ribulose-1,5-bisphosphate carboxylase/oxygenase and induction of stressrelated proteins. Electrophoresis, 22: 2824–2831

DOI

21
Han F, Chen H, Li X J, Yang M F, Liu G S, Shen S H (2009). A comparative proteomic analysis of rice seedlings under various high-temperature stresses. Biochim Biophys Acta, 1794: 1625–1634

22
Hashimoto M, Komatsu S (2007). Proteomics analysis of rice seedlings during cold stress. Proteomics, 7:1293–1302

DOI

23
He H, Li J (2008). Proteomic analysis of phosphoproteins regulated by abscisic acid in rice leaves. Biochem Biophys Res Commun, 371: 883–888

DOI

24
Kachroo P, Lee K H, Schwerdel C, Bailey J E, Chattoo B B (1997). Analysis of host-induced response in the rice blast fungus Magnaporthe grisea using two-dimensional polyacrylamide gel electrophoresis. Electrophoresis, 18: 163–169

DOI

25
Kawasaki S, Borchert C, Deyholos M, Wang H, Brazille S, Kawai K, Galbraith D, Bohnert H (2001). Gene expression profiles during the initial phase of salt stress in rice. Plant Cell, 13: 889–905

26
Ke Y, Han G, He H, Li J (2009). Differential regulation of proteins and phosphoproteins in rice under drought stress. Biochem Biophys Res Commun, 379: 133–138

DOI

27
Kim D W (2005). A hydroponic rice seedling culture model system for investigating proteome of salt stress in rice leaf. Electrophoresis, 26: 4521–4539

DOI

28
Kim H J, Song E J, Lee K J (2002). Proteomic analysis of protein phosphorylations in heat shock response and thermotolerance. J Biol Chem, 277: 21193–23207

29
Kim S T, Kim S G, Hwang D H, Kang S Y, Kim H J, Lee B H, Lee J J, Kang K Y (2004). Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea. Proteomics, 4: 3569–3578

DOI

30
Koller A, Washburn M P, Lange B M, Andon N L, Deciu C, Haynes P A, Hays L, Schieltz D, Ulaszek R, Wei J, Wolters D, Yates J R (2002). Proteomic survey of metabolic pathways in rice. Proc Natl Acad Sci, 99: 11969–11974

DOI

31
Konishi H, Ishiguro K, Komatsu S (2001). A proteomics approach towards understanding blast fungus infection of rice grown under different levels of nitrogen fertilization. Proteomics, 1: 1162–1171

DOI

32
Konishi H, Komatsu S (2003). A proteomics approach to investigating promotive effects of brassinolide on lamina inclination and root growth in rice seedlings. Biol Pharm Bull, 26: 401–408

DOI

33
Lee D G, Ahsan N, Lee S H, Kang K Y, Bahk J D, Lee I J, Lee B H (2007a). A proteomic approach in analyzing heat-responsive proteins in rice leaves. Proteomics, 7: 3369–3383

DOI

34
Lee D G, Ahsan N, Lee S H, Kang K Y, Lee J J, Lee B H (2007b). An approach to identify cold-induced low-abundant proteins in rice leaf. C R Biol, 330: 215–225

DOI

35
Lee K, Bae D W, Kim S H, Han H J, Liu X, Park H C, Lim C O, Lee S Y, Chung W S (2010). Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium. J Plant Physiol, 167: 161–168

DOI

36
Lin Y Z, Chen H Y, Kao R, Chang S P, Chang S J, Lai E M (2008). Proteomic analysis of rice defense response induced by probenazole. Phytochemistry, 69: 715–728

DOI

37
Lutts S, Kinet J M, Bouharmont J (1996). Ethylene production by leaves of rice Oryza sativa L. in relation to salinity tolerance and exogenous putrescine application. Plant Science, 116: 15–25

DOI

38
Mahmood T, Kakishima M, Komatsu S (2007). Proteomic analysis of jasmonic acid-regulated proteins in rice leaf blades. Protein Pep Lett, 14: 311–319

DOI

39
Maksymiec W (1997). Effect of copper on cellular processes in higher plants. Photosynthetica, 34: 321–342

DOI

41
Mittler R, Zilinskas B A (1994). Regulation of pea cytosolic ascorbate peroxidase and other antioxidant enzymes during the progression of drought stress and following recovery from drought. Plant J, 5: 397–405

DOI

42
Nozu Y, Tsugita A, Kamijo K (2006). Proteomic analysis of rice leaf, stem, and root tissues during growth course. Proteomics, 6: 3665–3670

DOI

43
Osmond C B, Grace S C (1995). Perspectives on photoinhibition and photorespiration in the field: quintessential inefficiencies of the light and dark reactions of photosynthesis? J Exp Bot, 46: 1351–1362

44
Parker R, Flowers T J, Moore A L, Harpham N V (2006). An accurate and reproducible method for proteome profiling of the effects of salt stress in the rice leaf lamina. J Exp Bot, 57: 1109–1118

DOI

45
Portis A R Jr (2003). Rubisco activase-Rubisco’s catalytic chaperone. Photosynth Res, 75: 11–27

DOI

46
Rakwal R, Komatsu S (2004). Abscisic acid promoted changes in the protein profiles of rice seedling by proteome analysis. Mol Biol Rep, 31: 217–230

DOI

47
Salekdeh G H, Siopongco J, Wade L J, Ghareyazie B, Bennett J (2002). A proteomic approach to analyzing drought- and salt-responsiveness in rice. Field Crops Research, 2: 1131–1145

48
Scafaro A P, Haynes P A, Atwell B J (2010). Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice. J Exp Bot, 61: 191–202

DOI

49
Shen S, Jing Y, Kuang T (2003). Proteomics approach to identify wound-response related proteins from rice leaf sheath. Proteomics, 3: 527–535

DOI

50
Shen S, Matsubae M, Takao T, Tanaka N, Komatsu S (2002). A proteomic analysis of leaf sheaths from rice. J Biochem, 132: 613–620

51
Soranzo N, Sari Gorla M, Mizzi L, De Toma G, Frova C (2004). Organisation and struc- tural evolution of the rice glutathione S- transferase gene family. Mol Genet Genomics, 271: 511–521

DOI

52
Tanaka N, Konishi H, Khan M M, Komatsu S (2004). Proteome analysis of rice tissues by two-dimensional electrophoresis: an approach to the investigation of gibberellin regulated proteins. Mol Genet Genomics, 270: 485–496

DOI

53
Thomashow M F (2001). So what’s new in the field of plant cold acclimation? Plant Physiol, 125: 89–93

DOI

54
Tsunezuka H, Fujiwara M, Kawasaki T, Shimamoto K (2005). Proteome analysis of programmed cell death and defense signaling using the rice lesion mimic mutant cdr2. Mol Plant Microbe Interact, 18: 52–59

DOI

55
Yan S, Tang Z, Su W, Sun W (2005). Proteomic analysis of salt stress-responsive proteins in rice root. Proteomics, 5: 235–244

DOI

56
Yan S P, Zhang Q Y, Tang Z C, Su W A, Sun W N (2006). Comparative proteomic analysis provides new insights into chilling stress responses in rice. Mol Cell Proteomics, 5: 484–496

DOI

57
Yang P, Chen H, Liang Y, Shen S (2007a). Proteomic analysis of de-etiolated rice seedlings upon exposure to light. Proteomics, 7: 2459–2468

DOI

58
Yang P, Li X, Wang X, Chen H, Chen F, Shen S (2007b). Proteomic analysis of rice (Oryza sativa) seeds during germination. Proteomics, 7: 3358–3368

DOI

59
Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science, 296: 79–92

DOI

60
Yu C L, Yan S P, Wang C C, Hu H T, Sun W N, Yan C Q, Chen J P, Yang L (2008). Pathogenesis-related proteins in somatic hybrid rice induced by bacterial blight. Phytochemistry, 69: 1989–1996

DOI

66
Yuzo N, Akira T, Kenichi K (2006). Proteomic analysis of rice leaf, stem and root tissues during growth course. Proteomics, 6: 3665–3670

DOI

61
Zang X, Komatsu S (2007). A proteomics approach for identifying osmotic-stress-related proteins in rice. Phytochemistry, 68: 426–437

DOI

63
Zhao C, Wang J, Cao M, Zhao K, Shao J, Lei T, Yin J, Hill G G, Xu N, Liu S (2005). Proteomic changes in rice leaves during development of field-grown rice plants. Proteomics, 5: 961–972

DOI

64
Zhao X C, Schaller G E (2004). Effect of salt and osmotic stress upon expression of the ethylene receptor ETR1 in Arabidopsis thaliana. FEBS Letters, 562: 189–192

DOI

65
Zhong B, Karibe H, Komatsu S, Ichimura H, Nagamura Y, Sasaki T, Hirano H (1997). Screening of rice (Oryza sativa) genes from a cDNA based on the sequence data-file of proteins separated by two-dimensional electrophoresis. Breeding Sci, 47: 245–251

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