Optimization of Clostridium beijerinckii semi-solid fermentation of rape straw to produce butyric acid by genome analysis

Hui Kou, Jia Zheng, Guangbin Ye, Zongwei Qiao, Kaizheng Zhang, Huibo Luo, Wei Zou

Bioresources and Bioprocessing ›› 2024, Vol. 11 ›› Issue (1) : 24.

Bioresources and Bioprocessing All Journals
Bioresources and Bioprocessing ›› 2024, Vol. 11 ›› Issue (1) : 24. DOI: 10.1186/s40643-024-00742-y
Research

Optimization of Clostridium beijerinckii semi-solid fermentation of rape straw to produce butyric acid by genome analysis

Author information +
History +

Abstract

Butyric acid is a volatile saturated monocarboxylic acid, which is widely used in the chemical, food, pharmaceutical, energy, and animal feed industries. This study focuses on producing butyric acid from pre-treated rape straw using simultaneous enzymatic hydrolysis semi-solid fermentation (SEHSF). Clostridium beijerinckii BRM001 screened from pit mud of Chinese nongxiangxing baijiu was used. The genome of C. beijerinckii BRM001 was sequenced and annotated. Using rape straw as the sole carbon source, fermentation optimization was carried out based on the genomic analysis of BRM001. The optimized butyric acid yield was as high as 13.86 ± 0.77 g/L, which was 2.1 times higher than that of the initial screening. Furthermore, under optimal conditions, non-sterile SEHSF was carried out, and the yield of butyric acid was 13.42 ± 0.83 g/L in a 2.5-L fermentor. This study provides a new approach for butyric acid production which eliminates the need for detoxification of straw hydrolysate and makes full use of the value of fermentation waste residue without secondary pollution, making the whole process greener and more economical, which has a certain industrial potential.

Keywords

Butyric acid / Clostridium beijerinckii / Semi-solid non-sterile fermentation / Rape straw / Genome annotation

Cite this article

Download citation ▾
Hui Kou, Jia Zheng, Guangbin Ye, Zongwei Qiao, Kaizheng Zhang, Huibo Luo, Wei Zou. Optimization of Clostridium beijerinckii semi-solid fermentation of rape straw to produce butyric acid by genome analysis. Bioresources and Bioprocessing, 2024, 11(1): 24 https://doi.org/10.1186/s40643-024-00742-y

References

Adeboye PT, Bettiga M, Olsson L. The chemical nature of phenolic compounds determines their toxicity and induces distinct physiological responses in Saccharomyces cerevisiae in lignocellulose hydrolysates. AMB Express, 2014, 4: 46.
CrossRef Google scholar
Ai B, Chi X, Meng J, Sheng Z, Zheng L, Zheng X, Li J. Consolidated bioprocessing for butyric acid production from rice straw with undefined mixed culture. Front Microbiol, 2016, 7: 1648.
CrossRef Google scholar
Bai GJ, Ma YF, Zou W. Pretreatment and enzymatic hydrolysis of rice straw under normal pressure and moderate temperature. Food Ferment Ind, 2019, 45(23): 207-213.
Birgen C, Markussen S, Wentzel A, Preisig HA. Response surface methodology for understanding glucose and xylose utilization by Clostridium beijerinckii NCIMB 8052. Chem Eng Trans, 2018, 65: 61-66.
Blumberg LM, Klee MS. Quantitative comparison of performance of isothermal and temperature-programmed gas chromatography. J Chromatogr A, 2001, 933(1–2): 13-26.
CrossRef Google scholar
Chan PP, Lowe TM. tRNAscan-SE: Searching for tRNA genes in genomic sequences. Methods Mol Biol, 2019, 1962: 1-14.
CrossRef Google scholar
Chen CK, Blaschek HP. Effect of acetate on molecular and physiological aspects of Clostridium beijerinckii NCIMB 8052 solvent production and strain degeneration. Appl Environ Microbiol, 1999, 65(2): 499-505.
CrossRef Google scholar
Chi X, Li J, Wang X, Zhang Y, Antwi P. Hyper-production of butyric acid from delignified rice straw by a novel consolidated bioprocess. Bioresour Technol, 2018, 254: 115-120.
CrossRef Google scholar
Cho DH, Lee YJ, Um Y, Sang BI, Kim YH. Detoxification of model phenolic compounds in lignocellulosic hydrolysates with peroxidase for butanol production from Clostridium beijerinckii. Appl Microbiol Biotechnol, 2009, 83(6): 1035-1043.
CrossRef Google scholar
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics, 2007, 23(6): 673-679.
CrossRef Google scholar
Dwidar M, Kim S, Jeon BS, Um Y, Mitchell RJ, Sang BI. Co-culturing a novel Bacillus strain with Clostridium tyrobutyricum ATCC 25755 to produce butyric acid from sucrose. Biotechnol Biofuels, 2013, 6(1): 35.
CrossRef Google scholar
Fonseca BC, Reginatto V, López-Linares JC, Lucas S, García-Cubero MT, Coca M. Ideal conditions of microwave-assisted acid pretreatment of sugarcane straw allow fermentative butyric acid production without detoxification step. Bioresour Technol, 2021, 329: 124929.
CrossRef Google scholar
Han HW, Liu JP, Wang X, Xu S. Explosion risk analysis of supersaturated at high temperature ammonium nitrate solution. Explos Mater, 2023, 52(1): 37-43.
Heng W, Li T, Ye G, Zou W. Screening and identification of high-yield butyric acid Clostridium sp. strain and its growth tolerance. China Brew, 2021, 40(3): 134-138.
Huang J, Zhu H, Tang W, Wang P, Yang S-T. Butyric acid production from oilseed rape straw by Clostridium tyrobutyricum immobilized in a fibrous bed bioreactor. Process Biochem, 2016, 51(12): 1930-1934.
CrossRef Google scholar
Jiang L, Fu H, Yang HK, Xu W, Wang J, Yang ST. Butyric acid: applications and recent advances in its bioproduction. Biotechnol Adv, 2018, 36(8): 2101-2117.
CrossRef Google scholar
Kanehisa M, Sato Y, Kawashima M, Furumichi M, Tanabe M. KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res, 2016, 44(D1): D457-462.
CrossRef Google scholar
Krzywinski M, Schein J, Birol İ, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. Circos: An information aesthetic for comparative genomics. Genome Res, 2009, 19(9): 1639-1645.
CrossRef Google scholar
Li J, Wang L, Chen H. Periodic peristalsis increasing acetone–butanol–ethanol productivity during simultaneous saccharification and fermentation of steam-exploded corn straw. J Biosci Bioeng, 2016, 122(5): 620-626.
CrossRef Google scholar
Liu S, Bischoff KM, Leathers TD, Qureshi N, Rich JO, Hughes SR. Butyric acid from anaerobic fermentation of lignocellulosic biomass hydrolysates by Clostridium tyrobutyricum strain RPT-4213. Bioresour Technol, 2013, 143: 322-329.
CrossRef Google scholar
Liu J, Guo T, Wang D, Xu J, Ying H. Butanol production by a Clostridium beijerinckii mutant with high ferulic acid tolerance. Biotechnol Appl Biochem, 2016, 63(5): 727-733.
CrossRef Google scholar
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience, 2012, 1(1): 18.
CrossRef Google scholar
Luo H, Yang R, Zhao Y, Wang Z, Liu Z, Huang M, Zeng Q. Recent advances and strategies in process and strain engineering for the production of butyric acid by microbial fermentation. Bioresour Technol, 2018, 253: 343-354.
CrossRef Google scholar
Meng CH, Zhang JL, Qian Y, Wang F, Shi ZL, Zhong JF. Research progress on utilization of rape straw as feed. Jiangsu Agr Sci, 2021, 49(16): 26-31.
Popoff MR. Selective medium for isolation of Clostridium butyricum from human feces. J Clin Microbiol, 1984, 20(3): 417-420.
CrossRef Google scholar
Sánchez-Maldonado AF, Schieber A, Gänzle MG. Structure–function relationships of the antibacterial activity of phenolic acids and their metabolism by lactic acid bacteria. J Appl Microbiol, 2011, 111(5): 1176-1184.
CrossRef Google scholar
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res, 2016, 44(14): 6614-6624.
CrossRef Google scholar
Thirmal C, Dahman Y. Comparisons of existing pretreatment, saccharification, and fermentation processes for butanol production from agricultural residues. Can J Chem Eng, 2012, 90(3): 745-761.
CrossRef Google scholar
Tian Y, Heng X, Zou W, Ye G. Isolation and identification of clostridia from the pit mud of Strong-flavor Baijiu and comparative study on butyric acid production. Food Ferment Ind, 2019, 45(23): 60-65.
Wick RR, Judd LM, Gorrie CL, Holt KE. Unicycler: resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol, 2017, 13(6): e1005595.
CrossRef Google scholar
Wu FY, Yang GY, Dai R, Chen SJ, Liu YJ, Gu ZL. Regulation of gene expression by biotin and its mechanisms. China Feed, 2016, 1: 7-9.
Zhang J, Greasham R. Chemically defined media for commercial fermentations. Appl Microbiol Biotechnol, 1999, 51(4): 407-421.
CrossRef Google scholar
Zhang J, Zhou J, Liu J, Chen K, Liu L, Chen J. Development of chemically defined media supporting high cell density growth of Ketogulonicigenium vulgare and Bacillus megaterium. Bioresour Technol, 2011, 102(7): 4807-4814.
CrossRef Google scholar
Zhang L-q, Chen X-f, Wang C, Xiong L, Chen X-d. Research advances on adsorption resin in detoxification of straw dilute acid hydrolysate. Adv New Renew Energ, 2019, 7(6): 505-512.
Funding
National Natural Science Foundation of China(31801522); the Cooperation Project of Wuliangye Group Co., Ltd. and Sichuan University of Science & Engineering, China(CXY2019ZR011); Sichuan University of Science & Engineering(2020RC36)

34

Accesses

3

Citations

Detail

Sections
Recommended

/