Isolation of four carbapenem-resistant gram-negative species from a single fly

Hanyu Wang1, Hongwei Zhou1, Gongxiang Chen1, Ning Dong1,2,3,4()()

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Animal Disease ›› 2024, Vol. 4 ›› Issue (1) : 4. DOI: 10.1186/s44149-024-00110-5

Isolation of four carbapenem-resistant gram-negative species from a single fly

  • Hanyu Wang1, Hongwei Zhou1, Gongxiang Chen1, Ning Dong1,2,3,4()()
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Abstract

The widespread occurrence of carbapenem-resistant organisms has garnered significant public attention. Arthropods, including flies, are important vectors of multidrug-resistant bacteria. In this study, we reported the simultaneous carriage of four carbapenem-resistant isolates from different species, namely, Escherichia coli( E. coli), Providencia manganoxydans( P. manganoxydan), Myroides odoratimimus( M. odoratimimus) and Proteus mirabilis( P. mirabilis), from a single fly in China. These isolates were characterized through antimicrobial susceptibility testing, conjugation assays, whole-genome sequencing, and bioinformatics analysis. M. odoratimimusshowed intrinsic resistance to carbapenems. The mechanisms of carbapenem resistance in E. coli, P. manganoxydans, and P. mirabiliswere due to the production of NDM-5, NDM-1 and NDM-1, respectively. Genetic context of the bla NDM genes in these three isolates varied. The bla NDM-5 gene in E. coliwas located on an IncHI2/HI2A multidrug-resistant plasmid, which was conjugatively transferable. The bla NDM-1 gene in P. mirabilisresided on the pPM14-NDM_123k-like nonconjugative plasmid. The bla NDM-1 gene in P. manganoxydanswas found in a nonconjugatively transferable, multidrug-resistant region. The results of this study enhance our understanding of the dissemination of carbapenem-resistant organisms and suggest the need for a more comprehensive approach to antibiotic resistance research encompassing humans, animals, and the environment.

Keywords

Fly / Carbapenem-resistant organism / Whole-genome sequencing / Phenotypic characterization / bla NDM

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Hanyu Wang, Hongwei Zhou, Gongxiang Chen, Ning Dong. Isolation of four carbapenem-resistant gram-negative species from a single fly. Animal Disease, 2024, 4(1): 4 https://doi.org/10.1186/s44149-024-00110-5

References

[1]
Bankevich, A., S. Nurk, D. Antipov, A.A. Gurevich, M. Dvorkin, A.S. Kulikov, V.M. Lesin, S.I. Nikolenko, S. Pham, and A.D. Prjibelski. 2012. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. Journal of Computational Biology 19 (5): 455–477. https://doi.org/10.1089/cmb.2012.0021.
[2]
Beghain, J., A. Bridier-Nahmias, H. Le Nagard, E. Denamur, and O. Clermont. 2018. ClermonTyping: An easy-to-use and accurate in silico method for Escherichia genus strain phylotyping. Microbial Genomics 4 (7): e000192. https://doi.org/10.1099/mgen.0.000192.
[3]
Bessonov, K., C. Laing, J. Robertson, I. Yong, K. Ziebell, V.P. Gannon, A. Nichani, G. Arya, J.H. Nash, and S. Christianson. 2021. ECTyper: In silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data. Microbial Genomics 7 (12): 000728. https://doi.org/10.1099/mgen.0.000728.
[4]
Clinical and Laboratory Standards Institute. Standards for Antimicrobial Susceptibility Testing—Thirty-Third Edition: M100. 2023.
[5]
Hassan, B., M. Ijaz, A. Khan, K. Sands, G.-I. Serfas, L. Clayfield, M.M. El-Bouseary, G. Lai, E. Portal, and A. Khan. 2021. A role for arthropods as vectors of multidrug-resistant enterobacterales in surgical site infections from South Asia. Nature Microbiology 6 (10): 1259–1270. https://doi.org/10.1038/s41564-021-00965-1.
[6]
Sands, K., M.J. Carvalho, E. Portal, K. Thomson, C. Dyer, C. Akpulu, R. Andrews, A. Ferreira, D. Gillespie, and T. Hender. 2021. Characterization of antimicrobial-resistant gram-negative bacteria that cause neonatal sepsis in seven low-and middle-income countries. Nature Microbiology 6 (4): 512–523. https://doi.org/10.1038/s41564-021-00870-7.
[7]
Seemann, T. 2016. MLST—Scan contig files against PubMLST typing schemes. https://github.com/tseemann/mlst. Accessed 1 Nov 2023
[8]
Yang, S., Q. Liu, Z. Shen, H. Wang, and L. He. 2020. Molecular epidemiology of Myroides odoratimimus in nosocomial catheter-related infection at a general hospital in China. Infection and Drug Resistance 13: 1981–1993. https://doi.org/10.2147/IDR.S251626.
[9]
Yang, W., L. Ding, R. Han, D. Yin, S. Wu, Y. Yang, D. Zhu, Y. Guo, and F. Hu. 2023. Current status and trends of antimicrobial resistance among clinical isolates in China: A retrospective study of CHINET from 2018 to 2022. One Health Advances 1 (1): 8. https://doi.org/10.1186/s44280-023-00009-9.
[10]
Zhang, Y., D. Gu, X. Yang, Y. Wu, C. Liu, Z. Shen, and R. Zhang. 2022. Emergence and genomic characterization of a KPC-2-, NDM-1-, and IMP-4-producing Klebsiella michiganensis isolate. Frontiers in Microbiology 12: 762509. https://doi.org/10.3389/fmicb.2021.762509.
Funding
National Natural Science Foundation of China(32300156); Natural Science Foundation of Jiangsu Province(BK20220493)
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