Exploring the molecular mechanism of Corydalis yanhusuo against prostate cancer based on network pharmacology and molecular docking validation

Ying Zhu , Junwei Lu , Jumin Xie

Asian Journal of Traditional Medicines ›› 2024, Vol. 19 ›› Issue (5) : 241 -265.

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Asian Journal of Traditional Medicines ›› 2024, Vol. 19 ›› Issue (5) : 241 -265.
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Exploring the molecular mechanism of Corydalis yanhusuo against prostate cancer based on network pharmacology and molecular docking validation

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Abstract

The molecular mechanism underlying Corydalis Yanhusuo’s therapeutic potential in prostate cancer (PCa) treatment was elucidated using network pharmacology and molecular docking. Nineteen active ingredients, 399 drug targets, 1790 disease targets and 143 intersection targets were identified. Ten core targets were screened from the protein-protein interaction network. Enrichment analysis revealed 133 GO terms and 114 KEGG pathways. Corydalis Yanhusuo may potentially treat prostate cancer through pathways such as the Rap1 signaling pathway, phospholipase D signaling pathway, Ras signaling pathway, VEGF signaling pathway and JAK-STAT signaling pathway. Significant differences in expression were observed for EGFR, PDGFRA, PIK3CA, PIK3CD, PIK3CG and PIK3R1. Molecular docking and dynamics simulation analysis showed low binding energy between active components and the six core genes of Corydalis Yanhusuo, indicating a favorable docking effect. This study shows that Corydalis Yanhusuo exhibits promise in prostate cancer treatment through a synergistic “multi-component-multi-target- multi-pathway” effect.

Keywords

Corydalis Yanhusuo / prostate cancer / network pharmacology / molecular mechanism / molecular docking

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Ying Zhu, Junwei Lu, Jumin Xie. Exploring the molecular mechanism of Corydalis yanhusuo against prostate cancer based on network pharmacology and molecular docking validation. Asian Journal of Traditional Medicines, 2024, 19(5): 241-265 DOI:

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Author contribution

J. X conceived the study. Y. Z and J. L, investigated and analyzed the data. J. X supervised the study. J. X wrote and revised the manuscript. All authors read and agreed to publish the paper.

Funding

This study was supported by local special projects in major health of Hubei P+rovincial Science and Technology Department (2022BCE054), key scientific research projects of Hubei Polytechnic University (23xjz08A), and Hubei Polytechnic University · Huangshi Daye Lake high-tech Zone University Science Park Joint Open Fund Project (23xjz04AK).

Conflict of interest

The authors declare no conflict of interest.

Data availability

The processed data and raw data are freely serviced from the first and corresponding authors.

References

[1]

Wang G, Zhao D, Spring DJ, et al. Genetics and biology of prostate cancer. Genes Dev, 2018, 32: 1105-1140.

[2]

Kamat AM, Huang SF, Bermejo CE, et al. Total pelvic exenteration: effective palliation of perineal pain in patients with locally recurrent prostate cancer. J Urol, 2003, 170: 1868-1871.

[3]

Gartrell BA, Saad F. Pathologic fracture in patients with metastatic prostate cancer. Curr Opin Urol, 2014, 24: 595-600.

[4]

Tanno T, Rabel A, Alleyne M, et al. Hepcidin, anaemia, and prostate cancer. BJU Int, 2011, 107: 678-679.

[5]

Parsons BA, Evans S, Wright MP. Prostate cancer and urinary incontinence. Maturitas, 2009, 63: 323-328.

[6]

Global cancer burden growing, amidst mounting need for services. Saudi Med J, 2024, 45: 326-327.

[7]

Sekhoacha M, Riet K, Motloung P, et al. Prostate Cancer Review: Genetics, Diagnosis, Treatment Options, and Alternative Approaches. Molecules, 2022, 27: 5730.

[8]

Ren FM, Liu Y, Zhu XF, et al. Advances in the study of resources of Corydalis medicinal materials. World J Tradit Chin Med, 2020, 15: 717-725.

[9]

Zheng H, Zou XW, Wang SY, et al. Herbal Textual Research on Corydalis yanhusuo. J Anhui Agric Sci, 2022, 50: 139-144+148.

[10]

Jiang MD, Bao WL, Xu N, et al. Isolation and purification of alkaloids from Corydalis yanhusuo W. T. Wang and their anti-inflammatory effects. Guangzhou Chem Ind, 2022, 50: 70-73.

[11]

Wan CX, Mu Y. Observation on the effect of acupoint application of vinegar Corydalis yanhusuo and Lamiophlomis rotata granules combined with acupoint application in postoperative analgesia for anorectal diseases. Med Sci J Cent South China, 2023, 51: 582-584+588.

[12]

Qin XP, Meng Y, Liu SC, et al. Structure-activity relationship of anti-inflammatory and analgesic effects of Corydalis yanhusuo W. T. Wang in Qizhi Weitong Granules. Chin J Exp Tradit Med Formulae, 1-14 [2024- 04-13]. Available at: https://doi.org/10.13422/j.cnki.syfjx.20231517

[13]

Alhassen L, Nuseir K, Ha A, et al. The Extract of Corydalis yanhusuo Prevents Morphine Tolerance and Dependence. Pharmaceuticals (Basel), 2021, 14: 1034.

[14]

Gu Y, Shi W, Wang DC. Compound Yanhusuo Decoction for the Treatment of Acute Myocardial Infarction Complicated with Malignant Ventricular Arrhythmia. Henan Tradit Chin Med, 2024, 44: 259-264.

[15]

Alhassen L, Nuseir K, Ha A, et al. The Extract of Corydalis yanhusuo Prevents Morphine Tolerance and Dependence. Pharmaceuticals (Basel), 2021, 14: 1034.

[16]

Guan XF, Wang R, Qu XF, et al. Advances in the study of chemical components and pharmacological effects of Corydalis yanhusuo W. T. Wang. Chem Eng, 2020, 34: 57-60.

[17]

Chang S, Liu ZH, Han N, et al. Study on the Alkaloids and Their Anti-tumor Activities in the Tubers of Corydalis yanhusuo W. T. Wang. Chin Tradit Pat Med, 2022, 44: 3507-3513.

[18]

Liu TT, Zhang Z, Wang C, et al. The mechanism of action of dehydrocorydaline in the treatment of bladder cancer. J Wannan Med Coll, 2022, 41: 409-412.

[19]

Hang JS, Xu KY, Zhu SY, et al. Clinical application and dosage of Corydalis yanhusuo W. T. Wang. Jilin J Chin Med, 2020, 40: 809-811.

[20]

Ru J, Li P, Wang J, et al. TCMSP: a database of systems pharmacology for drug discovery from herbal medicines. J Cheminform, 2014, 6: 13.

[21]

Chen X, Zhou H, Liu YB, et al. Database of traditional Chinese medicine and its application to studies of mechanism and to prescription validation. Br J Pharmacol, 2006, 149: 1092-1103.

[22]

Liu Z, Guo F, Wang Y, et al. BATMAN-TCM: a Bioinformatics Analysis Tool for Molecular mechANism of Traditional Chinese Medicine. Sci Rep, 2016, 6: 21146.

[23]

Lipinski CA. Lead- and drug-like compounds: the rule- of-five revolution. Drug Discov Today Technol, 2004, 1: 337-341.

[24]

Kim S, Chen J, Cheng T, et al. PubChem in 2021: new data content and improved web interfaces. Nucleic Acids Res, 2021, 49: 1388-1395.

[25]

Daina A, Michielin O, Zoete V. SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules. Sci Rep, 2017, 7: 42717.

[26]

Daina A, Michielin O, Zoete V. SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules. Nucleic Acids Res, 2019, 47: 357-364.

[27]

Stelzer G, Rosen N, Plaschkes I, et al. The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses. Curr Protoc Bioinformatics, 2016, 54: 1.30. 1-1.30.33.

[28]

Amberger JS, Bocchini CA, Schiettecatte F, et al. OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders. Nucleic Acids Res, 2015, 43: 789-798.

[29]

Chen X, Ji ZL, Chen YZ. TTD: Therapeutic Target Database. Nucleic Acids Res, 2002, 30: 412-415.

[30]

Von Mering C, Huynen M, Jaeggi D, et al. STRING: a database of predicted functional associations between proteins. Nucleic Acids Res, 2003, 31: 258-261.

[31]

Chin CH, Chen SH, Wu HH, et al. cytoHubba: identifying hub objects and sub-networks from complex interactome. BMC Syst Biol, 2014, 8 Suppl 4: 11.

[32]

Huang DW, Sherman BT, Tan Q, et al. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res, 2007, 35: 169-175.

[33]

UniProt Consortium. UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res, 2021, 49: 480-489.

[34]

Berman HM, Westbrook J, Feng Z, et al. The Protein Data Bank. Nucleic Acids Res, 2000, 28: 235-242.

[35]

Eastman P, Swails J, Chodera JD, et al. OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. PLoS Comput Biol. 2017, 13: 1005659.

[36]

Tian L, Sobtop, Version [1.0(dev3.1)], http://sobereva.com/soft/Sobtop (accessed on 10, August 2024)

[37]

Maier JA, Martinez C, Kasavajhala K, et al. ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB. J Chem Theory Comput, 2015, 11: 3696-3713.

[38]

Zhou Q, Tian XF, Chang DG, et al. Chinese expert consensus on integrated traditional Chinese and Western medicine diagnosis and treatment of prostate cancer and health management. Natl J Androl, 2022, 2: 941-953.

[39]

Rebbeck TR. Prostate Cancer Genetics: Variation by Race, Ethnicity, and Geography. Semin Radiat Oncol, 2017, 27: 3-10.

[40]

Li C, Yao Y, Li L, et al. Based on the theory of cancer toxin pathogenesis for the treatment of prostate cancer. J Beijing Univ Tradit Chin Med, 1-7 [2024- 04-13].39.Available at: https://doi.org/10.3969/j.issn.1006-2157.2024.03.003.

[41]

Chen KD, Cui HR, Cheng XH, et al. Pharmacological Study on Corydalis yanhusuo W. T. Wang. Northwest Pharm J, 2023, 38: 1-9.

[42]

Liu DG, Chen QH. Chen Qihua’s experience in the treatment of hormone refractory prostate cancer by stages. Mod J Integr Tradit Chin West Med, 2021, 30: 2364-2368.

[43]

Yang XY, Chen QH, Cai WL, et al. Clinical Research Progress of Traditional Chinese Medicine in the Treatment of Prostate Cancer. Inf Tradit Chin Med, 2023, 40: 71-76+81.

[44]

Chen CH, Liao CH, Chang YL, et al. Protopine, a novel microtubule-stabilizing agent, causes mitotic arrest and apoptotic cell death in human hormone-refractory prostate cancer cell lines. Cancer Lett, 2012, 315: 1-11.

[45]

Li J, Cao B, Liu X, et al. Berberine suppresses androgen receptor signaling in prostate cancer. Mol Cancer Ther, 2011, 10: 1346-1356.

[46]

Ching MM, Reader J, Fulton AM. Eicosanoids in Cancer: Prostaglandin E(2) Receptor 4 in Cancer Therapeutics and Immunotherapy. Front Pharmacol, 2020, 11: 819.

[47]

Madrigal-Martínez A, Constâncio V, Lucio-Cazaña FJ, et al. PROSTAGLANDIN E(2) stimulates cancer- related phenotypes in prostate cancer PC3 cells through cyclooxygenase-2. J Cell Physiol, 2019, 234: 7548-7559.

[48]

Zhou K, Hu L, Liao W, et al. Coptisine Prevented IL-β-Induced Expression of Inflammatory Mediators in Chondrocytes. Inflammation, 2016, 39: 1558-1565.

[49]

Jang SI, Kim BH, Lee WY, et al. Stylopine from Chelidonium majus inhibits LPS-induced inflammatory mediators in RAW 264.7 cells. Arch Pharm Res, 2004, 27: 923-929.

[50]

Pannekoek WJ, Kooistra MR, Zwartkruis FJ, et al. Cell- cell junction formation: the role of Rap1 and Rap1 guanine nucleotide exchange factors. Biochim Biophys Acta, 2009, 1788: 790-796.

[51]

Shimizu Y, Hamazaki Y, Hattori M, et al. SPA-1 controls the invasion and metastasis of human prostate cancer. Cancer Sci, 2011, 102: 828-836.

[52]

Noble AR, Hogg K, Suman R, et al. Phospholipase D2 in prostate cancer: protein expression changes with Gleason score. Br J Cancer, 2019, 121: 1016-1026.

[53]

Hong X, Huang J. Research progress on the role of phosphatase D in tumor development. Chin J Pharmacol Toxicol, 2023, 37: 289-294.

[54]

Strittmatter BG, Jerde TJ, Hollenhorst PC. Ras/ERK and PI3K/AKT signaling differentially regulate oncogenic ERG mediated transcription in prostate cells. PLoS Genet, 2021, 17: 1009708.

[55]

Weber MJ, Gioeli D. Ras signaling in prostate cancer progression. J Cell Biochem, 2004, 91: 13-25.

[56]

Zhou T, Chen T, Lai B, et al. FBXW 2 inhibits prostate cancer proliferation and metastasis via promoting EGFR ubiquitylation and degradation. Cell Mol Life Sci, 2022, 79: 268.

[57]

Rossini A, Giussani M, Ripamonti F, et al. Combined targeting of EGFR and HER2 against prostate cancer stem cells. Cancer Biol Ther, 2020, 21: 463-475.

[58]

Russell MR, Jamieson WL, Dolloff NG, et al. The alpha- receptor for platelet-derived growth factor as a target for antibody-mediated inhibition of skeletal metastases from prostate cancer cells. Oncogene, 2009, 28: 412-421.

[59]

Zhang S, Cai J, Xie W, et al. miR-202 suppresses prostate cancer growth and metastasis by targeting PIK3CA. Exp Ther Med, 2018, 16: 1499-1504.

[60]

Lo UG, Chen YA, Cen J, et al. The driver role of JAK- STAT signalling in cancer stemness capabilities leading to new therapeutic strategies for therapy- and castration- resistant prostate cancer. Clin Transl Med, 2022, 12: 978.

[61]

Steiner I, Flores-Tellez T, Mevel R, et al. Autocrine activation of MAPK signaling mediates intrinsic tolerance to androgen deprivation in LY6D prostate cancer cells. Cell Rep, 2023, 42: 112377.

[62]

Murillo-Garzón V, Kypta R. WNT signalling in prostate cancer. Nat Rev Urol, 2017, 14: 683-696.

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