Reducing recalcitrance of black pepper to Agrobacterium-mediated transformation: an efficient way through nucellar apomixis to establish transgenic and genome-edited plants at high frequency and scale-up through bioreactor

Shina Sasi , Saranya Krishnan , Martin Kottackal , Khaled M.A. Amiri

Horticulture Research ›› 2026, Vol. 13 ›› Issue (6) : 67

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Horticulture Research ›› 2026, Vol. 13 ›› Issue (6) :67 DOI: 10.1093/hr/uhag067
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Reducing recalcitrance of black pepper to Agrobacterium-mediated transformation: an efficient way through nucellar apomixis to establish transgenic and genome-edited plants at high frequency and scale-up through bioreactor
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Abstract

Nucellar apomixis is truly clonal and is a powerful tool for broadening the genetic base of crops. Black pepper ( Piper nigrum L.), the ‘King of Spices’ is difficult to improve through conventional breeding. Although transgenesis and genome editing are prime strategies for rapid crop improvement, recalcitrance hinders genetic modifications. Here, we report a highly efficient Agrobacterium-mediated procedure for generating genetically modified black pepper plants using nucellar apomixis-derived embryos of the varieties Sreekara and Karimunda, with a 99% survival rate. Both Agrobacterium tumefaciens and Agrobacterium rhizogenes were efficient in transformation, and the AGL1 strain harboring the plasmid with mgfp achieved >90% frequency following 20 min in the infection medium, 30 s sonication, 10 min vacuum infiltration, and 4 days of cocultivation. Sugar type determined embryonal taproot development and soil establishment. Glucose-supplemented medium produced plantlets with well-developed root systems that displayed a high expression of PnPIN2. Transgenic plantlets survival ex vitro from glucose-supplemented liquid medium was 99%. The genome-editing efficiency of Pds using CRISPR/ Cas9 was 89%. Agroinfiltration of black pepper in this study is useful for high-throughput screening of disease resistance. Composite plants of black pepper generated at >60% efficacy is an easy strategy to develop plants expressing disease-resistant genes in roots to reduce yield loss, especially by root-rot. This study demonstrates that black pepper is an easy-to-transform crop, which reinforces speedy trait development through genetic modifications. Scale-up using temporary immersion bioreactors in this study fast-track high throughput accomplishment of untransformed/transformed/genome edited plants empower the market demand for black pepper.

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Shina Sasi, Saranya Krishnan, Martin Kottackal, Khaled M.A. Amiri. Reducing recalcitrance of black pepper to Agrobacterium-mediated transformation: an efficient way through nucellar apomixis to establish transgenic and genome-edited plants at high frequency and scale-up through bioreactor. Horticulture Research, 2026, 13 (6) : 67 DOI:10.1093/hr/uhag067

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Acknowledgements

We acknowledge the financial support of The Presidential Court, United Arab Emirates. This research project (MP 0824) was funded by The Presidential Court, United Arab Emirates.

Author contributions

Shina Sasi (Conceptualization, Writing-original draft, Validation, Methodology, Investigation, Formal analysis), Martin Kottackal (Conceptualization, Writing-original draft, Supervision, Analysis), Saranya Krishnan (Validation, Formal analysis, Review, Editing), and Khaled M.A. Amiri (Supervision-review & editing)

Data availability

All data supporting the findings of this study are included in this manuscript.

Conflicts of interest statement

The authors declare no conflicts of interest.

Supplementary material

Supplementary material is available at Horticulture Research online.

References

[1]

Kumari R, Wankhede DP, Bajpai A, et al. Genome wide identification and characterization of microsatellite markers in black pepper (Piper nigrum): a valuable resource for boosting genomics applications . PLoS One. 2019; 14: e0226002

[2]

Zhang S, Liang M, Wang N, et al. Reproduction in woody perennial citrus: an update on nucellar embryony and self-incompatibility. Plant Reprod. 2018; 31: 43-57

[3]

Nair RR, Gupta SD . High frequency plant regeneration through cyclic secondary somatic embryogenesis in black pepper (Piper nigrum L.) . Plant Cell Rep. 2006; 24: 699-707

[4]

Sasi S, Bhat AI . Optimization of cyclic somatic embryogenesis and assessing genetic fidelity in six varieties of black pepper (Piper nigrum L) . J Med Plants Stud. 2016; 4: 109-15

[5]

Sasikumar B, Veluthambi K . Transformation of black pepper (Piper nigrum L.) using agrobacterium-mediated Ti-plasmid based vectors . Ind Perfum. 1996; 40: 13-6

[6]

Sim SL, Jafar R, Power J, et al. Development of an Agrobacterium mediated transformation system for black pepper (Piper nigrum L.) . Acta Horti. 1998; 461: 349-53

[7]

Varghese JM, Bhat AI . An efficient Agrobacterium-mediated transformation protocol for black pepper (Piper nigrum L.) using embryogenic mass as explants . J Crop Sci Biotechnol. 2011; 14: 247-54

[8]

Revathy KA, Varghese JM, Bhat AI . Coat protein-mediated resistance to cucumber mosaic virus subgroup IB in black pepper (Piper nigrum L.) . In Vitro Cell Develop Biol-Plant. 2022; 58: 351-60

[9]

Ma L, Lukasik E, Gawehns F, et al. The use of agroinfiltration for transient expression of plant resistance and fungal effector proteins in Nicotiana benthamiana leaves . Meth Mole Biol. 2012; 835: 61-74

[10]

Hasegawa K, Timmers T, Chai J, et al. A disease resistance assay in Nicotiana benthamiana reveals the immune function of response to HopBA1 . Plant Physiol. 2024; 196: 722-5

[11]

Murthy HN, Joseph KS, Paek KY, et al. Bioreactor systems for micropropagation of plants: present scenario and future prospects. Front Plant Sci. 2023; 14: 1159588

[12]

Thanonkeo S, Kitwetcharoen H, Thanonkeo P, et al. Temporary immersion bioreactor (TIB) system for large-scale micropropagation of Musa sp. cv Kluai Numwa Pakchong 50. Horticult. 2024; 10: 1030

[13]

Barua R, Kundu S, Majumder S, et al. Exploring two bioreactor systems for micropropagation of Vaccinium membranaceum and the antioxidant enzyme profiling in tissue culture-raised plants . Plant Growth Regul. 2025; 105: 805-19

[14]

Spillane C, Hodgkin T . Broadening the Genetic Base of Crop Production . New York: Springer; 2001

[15]

Ozias-Akins P . Apomixis: developmental characteristics and genetics. Crit Rev Plant Sci. 2007; 25: 199-214

[16]

Fiaz S, Wang X, Younas A, et al. Apomixis and strategies to induce apomixis to preserve hybrid vigor for multiple generations. GM Crops Food. 2021; 12: 57-70

[17]

Nair R, Gupta SD . Somatic embryogenesis and plant regeneration in black pepper (Piper nigrum L.): I. Direct somatic embryogenesis from tissues of germinating seeds and ontogeny of somatic embryos . Plant Cell Rep. 2003; 22: 674-9

[18]

Joseph B, Joseph D, Jose S, et al. In vitro studies on five varieties of black pepper. J Trop Med Plants. 2012; 13: 2

[19]

Philip VJ, Joseph D, Triggs GS, et al. Micropropagation of black pepper (Piper nigrum Linn) through shoot tip cultures . Plant Cell Rep. 1992; 12: 41-4

[20]

Deepak DA, Malhotra EA, Shankar M, et al. Improved micropropagation protocol and molecular marker based genetic stability assessment of black pepper (Piper nigrum L.) . Ind J Plant Gen Resour. 2022; 35: 264-74

[21]

Siqueira JA, Hardoim P, Ferreira PC, et al. Unraveling interfaces between energy metabolism and cell cycle in plants. Trends Plant Sci. 2018; 23: 731-47

[22]

Dantas LA, Faria PSA, Dário BMM, et al. The impact of carbon source on cell growth and the production of bioactive compounds in cell suspensions of Hancornia speciosa Gomes . Sci Rep. 2021; 11: 24315

[23]

Gao F, Cao X, Qin C, et al. Effects of plant growth regulators and sucrose on proliferation and quality of embryogenic tissue in Picea pungens . Sci Rep. 2023; 13: 13194

[24]

Lema-Rumińska J, Goncerzewicz K, Gabriel M . Influence of abscisic acid and sucrose on somatic embryogenesis in cactus Copiapoa tenuissima Ritt. Forma mostruosa . Sci World J. 2013; 2013: 513985

[25]

Vahdati K, Bayat S, Ebrahimzadeh H, et al. Effect of exogenous ABA on somatic embryo maturation and germination in Persian walnut (Juglans regia L.) . Plant Cell Tissue Organ Cult. 2008; 93: 163-71

[26]

Rahman MH, Islam R, Hossain M, et al. Role of sucrose, glucose and maltose on conventional potato micropropagation. Bangladesh J Bot. 2010; 39: 67-74

[27]

Parajulee D, Basak S, Morton LB, et al. Role of carbon sources on in vitro plant regeneration in alfalfa (Medicago sativa L.) . Am J Plant Sci. 2025; 16: 703-23

[28]

Yaseen M, Ahmad T, Sablok G, et al. Role of carbon sources for in vitro plant growth and development. Mol Biol Rep. 2013; 40: 2837-49

[29]

Woodbury TJ, Pitts SL, Pilch AM, et al. Mechanisms of the different effects of sucrose, glucose, fructose, and a glucose-fructose mixture on wheat starch gelatinization, pasting, and retrogradation. J Food Sci. 2023; 88: 293-314

[30]

Levi A, Sink KC . Differential effects of sucrose, glucose and fructose during somatic embryogenesis in asparagus. J Plant Physiol. 1990; 137: 184-9

[31]

Mishra BS, Singh M, Aggrawal P, et al. Glucose and auxin signaling interaction in controlling Arabidopsis thaliana seedlings root growth and development . PLoS One. 2009; 4: e4502

[32]

Lou H, Kako S . Role of high sugar concentrations in inducing somatic embryogenesis from cucumber cotyledons. Sci Horti. 1995; 64: 11-20

[33]

Stitz M, Kuster D, Reinert M, et al. TOR acts as a metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana . EMBO J. 2023; 42: e112345

[34]

de Paiva NV, Otoni W . Carbon sources and their osmotic potential in plant tissue culture: does it matter? Sci Horti . 2003; 97: 193-202

[35]

Geiger D. Plant glucose transporter structure and function. Pflügers Archiv Eur J Physiol. 2020; 472: 1111-28

[36]

Stein O, Granot D . An overview of sucrose synthases in plants. Front Plant Sci. 2019; 10: 95

[37]

Krook J, Vreugdenhil D, van der Plas LW . Uptake and phosphorylation of glucose and fructose in Daucus carota cell suspensions are differently regulated . Plant Physiol Biochem. 2000; 38: 603-12

[38]

Kierans SJ, Taylor CT . Glycolysis: a multifaceted metabolic pathway and signaling hub. J Biol Sci. 2024; 300: 107906

[39]

Kyriazis GA, Soundarapandian MM, Tyrberg B . Sweet taste receptor signaling in beta cells mediates fructose-induced potentiation of glucose-stimulated insulin secretion. Proc Natl Acad Sci USA. 2012; 109: E524-32

[40]

do Nascimento AMM, Polesi LG, Back FP, et al. The chemical environment at maturation stage in Pinus spp. somatic embryogenesis: implications in the polyamine profile of somatic embryos and morphological characteristics of the developed plantlets . Front Plant Sci. 2021; 12: 771464

[41]

Yang Z, Zhang L, Diao F, et al. Sucrose regulates elongation of carrot somatic embryo radicles as a signal molecule. Plant Mol Biol. 2004; 54: 441-59

[42]

Cao X, Gao F, Qin C, et al. Optimizing somatic embryogenesis initiation, maturation and preculturing for cryopreservation in Picea pungens . Forests. 2022; 13: 2097

[43]

Moon HK, Kim YW, Hong YP, et al. Improvement of somatic embryogenesis and plantlet conversion in Oplopanax elatus, an endangered medicinal woody plant . SpringerPlus. 2013; 2: 428

[44]

Tognetti J, Pontis H, Martínez-Noël G . Sucrose signaling in plants: a world yet to be explored. Plant Signal Behav. 2013; 8: e23316

[45]

Saksena HB, Sharma M, Singh D, et al. The versatile role of glucose signalling in regulating growth, development and stress responses in plants. J Plant Biochem Biotechnol. 2020; 29: 687-99

[46]

Busti S, Coccetti P, Alberghina L, et al. Glucose signaling-mediated coordination of cell growth and cell cycle in Saccharomyces cerevisiae . Sensors. 2010; 10: 6195-240

[47]

Yu S, Cao L, Zhou CM, et al. Sugar is an endogenous cue for juvenile-to-adult phase transition in plants. eLife. 2013; 2: e00269

[48]

Yang L, Xu M, Koo Y, et al. Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C . eLife. 2013; 2: e00260

[49]

Meng LS, Bao QX, Mu XR, et al. Glucose- and sucrose-signaling modules regulate the Arabidopsis juvenile-to-adult phase transition . Cell Rep. 2021; 36: 109348

[50]

Křeček P, Skupa P, Libus J, et al. The PIN-FORMED (PIN) protein family of auxin transporters. Geno Biol. 2009; 10: 249

[51]

Yuan X, Xu P, Yu Y, et al. Glucose-TOR signaling regulates PIN2 stability to orchestrate auxin gradient and cell expansion in Arabidopsis root . Proc Natl Acad Sci USA. 2020; 117: 32223-5

[52]

Liu Y, Hu J, Duan X, et al. Target of rapamycin (TOR): a master regulator in plant growth, development, and stress responses. Ann Rev Plant Biol. 2025; 76: 341-71

[53]

Leitner J, Retzer K, Korbei B, et al. Dynamics in PIN2 auxin carrier ubiquitylation in gravity-responding Arabidopsis roots . Plant Signal Behav. 2012; 7: 1271-3

[54]

Dekkers BJ, Schuurmans JA, Smeekens SC . Interaction between sugar and abscisic acid signalling during early seedling development in Arabidopsis . Plant Mol Biol. 2008; 67: 151-67

[55]

Eliášová K, Konrádová H, Dobrev PI, et al. Desiccation as a post-maturation treatment helps complete maturation of Norway spruce somatic embryos: carbohydrates, phytohormones and proteomic status. Front Plant Sci. 2022; 13: 823617

[56]

Yang X, Chen M, Liu M, et al. ABA-GA antagonism and modular gene networks cooperatively drive acquisition of desiccation tolerance in perilla seeds. Front Plant Sci. 2025; 16: 1624742

[57]

Brocard-Gifford IM, Lynch TJ, Finkelstein RR . Regulatory networks in seeds integrating developmental, abscisic acid, sugar, and light signaling. Plant Physiol. 2003; 131: 78-92

[58]

Ciereszko I, Kleczkowski LA . Glucose and mannose regulate the expression of a major sucrose synthase gene in Arabidopsis via hexokinase-dependent mechanisms. Plant Physiol Biochem. 2002; 40: 907-11

[59]

Tong C, Li C, Cao XY, et al. Long-distance transport of sucrose in source leaves promotes sink root growth by the EIN3-SUC2 module. PLoS Genet. 2022; 18: e1010424

[60]

Dutta I, Kottackal M, Tumimbang E, et al. Sonication-assisted efficient Agrobacterium-mediated genetic transformation of the multipurpose woody desert shrub Leptadenia pyrotechnica . Plant Cell Tissue Organ Cult. 2013; 112: 289-301

[61]

Purayil FT, Alzaabi M, Sasi S, et al. Genetic modification of water spinach (Ipomoea aquatica), a genoprotective perennial leafy green . Physiol Plant. 2025; 177: e70257

[62]

Alam P, Khan ZA, Abdin MZ, et al. Efficient regeneration and improved sonication-assisted Agrobacterium transformation (SAAT) method for Catharanthus roseus . 3Biotech. 2017; 7: 26

[63]

Udayabhanu J, Huang T, Xin S, et al. Optimization of the transformation protocol for increased efficiency of genetic transformation in Hevea brasiliensis . Plants. 2022; 11: 1067

[64]

Sabbadini S, Capriotti L, Molesini B, et al. Comparison of regeneration capacity and Agrobacterium-mediated cell transformation efficiency of different cultivars and rootstocks of Vitis spp. via organogenesis . Sci Rep. 2019; 9: 582

[65]

Jones HD, Doherty A, Wu H . Review of methodologies and a protocol for the Agrobacterium-mediated transformation of wheat . Plant Meth. 2005; 1: 5

[66]

Li M, Wu Q, Guo F, et al. A versatile, rapid Agrobacterium-mediated transient expression system for functional genomics studies in cannabis seedling . Planta. 2024; 260: 18

[67]

Fu Q, Li C, Tang M, et al. An efficient protocol for Agrobacterium-mediated transformation of the biofuel plant Jatropha curcas by optimizing kanamycin concentration and duration of delayed selection . Plant Biotechnol Rep. 2015; 9: 405-16

[68]

Pareddy D, Chennareddy S, Anthony G, et al. Improved soybean transformation for efficient and high throughput transgenic production. Trans Res. 2020; 29: 267-81

[69]

Yadav S, Sharma P, Srivastava A, et al. Strain specific Agrobacterium-mediated genetic transformation of Bacopa monnieri . J Genet Eng Biotechnol. 2014; 12: 89-94

[70]

Alegbejo M, Lawal A, Chindo P, et al. Outbreak of basal stem rot and wilt disease of pepper in northern Nigeria. J Plant Prot Res. 2006; 46: 7-13

[71]

Fan Y, Xu F, Zhou H, et al. A fast, simple, high efficient and one-step generation of composite cucumber plants with transgenic roots by Agrobacterium rhizogenes-mediated transformation . Plant Cell Tissue Organ Cult. 2020; 141: 207-16

[72]

Leppyanen IV, Kirienko AN, Dolgikh EA . Agrobacterium rhizogenes-mediated transformation of Pisum sativum L. roots as a tool for studying the mycorrhizal and root nodule symbioses . PeerJ. 2019; 7: e6552

[73]

Mandal D, Sinharoy S . A toolbox for nodule development studies in chickpea: a hairy-root transformation protocol and an efficient laboratory strain of Mesorhizobium sp. Mol Plant-Microbe Interact. 2019; 32: 367-78

[74]

Wang H, Zheng Y, Zhou Q, et al. Fast, simple, efficient Agrobacterium rhizogenes-mediated transformation system to non-heading Chinese cabbage with transgenic roots . Horticult Plant J. 2024; 10: 450-60

[75]

Fan YL, Zhang XH, Zhong LJ, et al. One-step generation of composite soybean plants with transgenic roots by Agrobacterium rhizogenes-mediated transformation . BMC Plant Biol. 2020; 20: 208

[76]

Ma H, Meng X, Xu K, et al. Highly efficient hairy root genetic transformation and applications in citrus. Front Plant Sci. 2022; 13: 1039094

[77]

Qin G, Gu H, Ma L, et al. Disruption of phytoene desaturase gene results in albino and dwarf phenotypes in Arabidopsis by impairing chlorophyll, carotenoid, and gibberellin biosynthesis . Cell Res. 2007; 17: 471-82

[78]

Schenk RU, Hildebrandt AC . Medium and techniques for induction and growth of monocotyledonous and dicotyledonous plant cell cultures. Can J Bot. 1972; 50: 199-204

[79]

Lloyd G, McCown BH . Commercially-feasible micropropagation of Mountain Laurel, Kalmia latifolia, by shoot tip culture . Proc Inter Plant Prop Soci. 1981; 30: 421-7

[80]

Liu X, Chi CM . Estimating osmotic potential from electrical conductivity for solutions/extracts in salt-affected soils using a universal equation. J Soil Sci Plant Nut. 2014; 14: 1005-14

[81]

Sasi S, Krishnan S, Kodackattumannil P, et al. Learning from the desert legume tree, Prosopis cineraria to develop stress-tolerant crops . Environ Exp Bot. 2024; 228: 106003

[82]

Murashige T, Skoog F . A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant. 1962; 15: 473-97

[83]

Jefferson RA, Kavanagh TA, Bevan MW . GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 1987; 6: 3901-7

[84]

Krishnan S, Sasi S, Kodakkattumannil P, et al. Cationic and anionic detergent buffers in sequence yield high-quality genomic DNA from diverse plant species. Anal Biochem. 2024; 684: 115372

[85]

Zubko MK, Day A . Stable albinism induced without mutagenesis: a model for ribosome-free plastid inheritance. Plant J. 1998; 15: 265-71

[86]

Hu L, Xu Z, Wang M, et al. The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis. Nat Commun. 2019; 10: 4702

[87]

Sasi S, Krishnan S, Kodackattumannil P, et al. DNA-free high-quality RNA extraction from 39 difficult-to-extract plant species (representing seasonal tissues and tissue types) of 32 families and its validation for downstream molecular applications. Plant Meth. 2023; 19: 84

[88]

Livak KJ, Schmittgen TD . Analysis of the relative gene expression data using real-time quantitative PCR and the 2(−ΔΔCT) method. Meth. 2001; 25: 402-8

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