Haplotype-resolved genome assembly of Corydalis yanhusuo, a traditional Chinese medicine with unusual telomere motif

Dingqiao Xu; Ziqi Ye; Yongji Huang; Kejin Zhu; Hongbo Xu; Jingao Yu; Yimeng Feng; Xinyue Zhao; Long Wang; Hao Xu; Qien Li; Minjian Qin; Yuping Tang; Xingtan Zhang; Yucheng Zhao

doi:10.1093/hr/uhad296

Horticulture Research ›› 2024, Vol. 11 ›› Issue (2) :296 DOI: 10.1093/hr/uhad296

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Haplotype-resolved genome assembly of Corydalis yanhusuo, a traditional Chinese medicine with unusual telomere motif

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¹ School of Pharmacy, Shaanxi University of Chinese Medicine, Xi’an 712046, China

² Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China

³ Marine and Agricultural Biotechnology Laboratory, College of Geography and Oceanography, Minjiang University, Fuzhou 350108, China

⁴ Department of Resources Science of Traditional Chinese Medicines, School of Traditional Chinese Pharmacy, China Pharmaceutical University, Nanjing 210009, China

⁵ Shaanxi Innovative Drug Research Center, Shaanxi University of Chinese Medicine, Xi’an 712046, China

⁶ School of Bioscience and Engineering, Shaanxi University of Technology, Hanzhong 723000, China

⁷ Tibetan Medicine Research Center of Qinghai University, Tibetan Medical College of Qinghai University, Xining 810016, China

^* yupingtang9@126.com (Yuping Tang);

zhangxingtan@caas.cn (Xingtan Zhang);

zhaoyucheng1986@126.com (Yucheng Zhao)

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Dingqiao Xu, Ziqi Ye, Yongji Huang, Kejin Zhu, Hongbo Xu, Jingao Yu, Yimeng Feng, Xinyue Zhao, Long Wang, Hao Xu, Qien Li, Minjian Qin, Yuping Tang, Xingtan Zhang, Yucheng Zhao. Haplotype-resolved genome assembly of Corydalis yanhusuo, a traditional Chinese medicine with unusual telomere motif. Horticulture Research, 2024, 11 (2) : 296 DOI:10.1093/hr/uhad296

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Author contributions

Y.C.Z., X.T.Z., and Y.P.T. conceived and designed the research. D.Q.X., Z.Q.Y., H.B.X., J.G.Y., K.J.Z., and L.W. collected the samples. D.Q.X., Z.Q.Y., and Y.J.H. performed the genome assembly, experimental and data analysis. Y.M.F., X.Y.Z., H.X., L.Q.N., and M.J.Q. also performed the experimental and data analysis. D.Q.X. wrote the manuscript. Y.C.Z., X.T.Z., Z.Q.Y., and Y.J.H. revised the manuscript.

Acknowledgements

This project was funded by the open foundation of Shaanxi University of Chinese Medicine State Key Laboratory of R&D of Characteristic Qin Medicine Resources (SUCM-QM202202) and the key project at central government level: the Ability Establishment of Sustainable Use for Valuable Chinese Medicine Resources (2060302). It was also supported by the Fund of Traditional Chinese Medicine Institute of Anhui Dabie Mountain (TCMADM-2023-18), the Double First-Class University Project (CPU2022QZ27), and a grant from the Key Research and Development Program of Shaanxi (2022SF-543).

Data availability

The data that support the findings of this study have been deposited in the CNGB Sequence Archive (CNSA) of the China National GeneBank DataBase (CNGBdb) with accession number CNP0004356.

Conflict of interest

The authors declare no conflict of interest.

References

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