MdAIL5 overexpression promotes apple adventitious shoot regeneration by regulating hormone signaling and activating the expression of shoot development-related genes

Kai Liu , An Yang , Jiadi Yan , Zhaolin Liang , Gaopeng Yuan , Peihua Cong , Liyi Zhang , Xiaolei Han , Caixia Zhang

Horticulture Research ›› 2023, Vol. 10 ›› Issue (11) : 198

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Horticulture Research ›› 2023, Vol. 10 ›› Issue (11) :198 DOI: 10.1093/hr/uhad198
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MdAIL5 overexpression promotes apple adventitious shoot regeneration by regulating hormone signaling and activating the expression of shoot development-related genes
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Abstract

Adventitious shoot (AS) regeneration is a significant factor in the genetic transformation of horticultural plants. It is also a noteworthy approach to their vegetative propagation. AS regeneration remains highly dependent on the genotype or maturity of explants. We here found that the AS regeneration abilities of apple leaves were positively correlated with MdAIL5 expression. MdAIL5 overexpression dramatically increased AS regeneration efficiency. Notably, MdAIL5 overexpression could restore the AS formation ability of explants to a certain extent, which was lost with an increase in maturity. Endogenous hormone detection revealed that MdAIL5 overexpression changed the contents of auxin, cytokinin (CK), and other hormones in apple leaves. Transcriptome analysis revealed that many genes related to auxin, CK, and brassinolide signaling pathways were significantly and differentially expressed between MdAIL5-overexpressing transgenic apple and wild-type apple plants. Yeast one-hybrid assays, the electrophoretic mobility shift assay, and the dual-luciferase reporter assay revealed that MdAIL5 directly binds to MdARF9 and MdHB14 promoters and positively affects their expression. We here established a model of MdAIL5 regulating AS formation, which acts as a theoretical basis for facilitating genotype- or explant maturity-independent AS regeneration in the future.

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Kai Liu, An Yang, Jiadi Yan, Zhaolin Liang, Gaopeng Yuan, Peihua Cong, Liyi Zhang, Xiaolei Han, Caixia Zhang. MdAIL5 overexpression promotes apple adventitious shoot regeneration by regulating hormone signaling and activating the expression of shoot development-related genes. Horticulture Research, 2023, 10 (11) : 198 DOI:10.1093/hr/uhad198

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Acknowledgements

This work was financially supported by the China Agriculture Research System (Grant No. CARS-27), the National Natural Science Foundation of China (Grant No. 32202463), and the Agricultural Science and Technology Innovation Program (Grant No. CAAS-ASTIP-2021-RIP-02). We would like to thank Prof. Zhihong Zhang (Shenyang Agricultural University, Shenyang, Liaoning) for providing tissue-cultured ‘GL-3’ plants. We would like to thank Prof. Jialong Yao (New Zealand Institute for Plant and Food Research Limited, Mount Albert Research Centre, Auckland, New Zealand) for providing the pGreenII-0800-LUC plasmid. We would like to thank Prof. Wei Li (China Agricultural University, Beijing) for providing pJG4-5 and pLacZi plasmids.

Author contributions

C.X.Z., X.L.H., P.H.C., L.Y.Z. and K.L. conceived and planned the research. C.X.Z. and X.L.H. supervised the research. K.L., Z.L.L., A.Y., J.D.Y., P.H.C., X.L.H., G.P.Y. and C.X.Z. performed the experiments. K.L. and X.L.H. conducted data analysis. K.L. wrote the manuscript. C.X.Z. and X.L.H. edited the manuscript. All authors have read and agreed to the final version of the manuscript.

Data availability

The data used to support the study findings are included within the article.

Conflict of interest

The authors declare that they have no conflict of interest.

Supplementary data

Supplementary data is available at Horticulture Research online.

References

[1]

Sang YL, Cheng ZJ, Zhang XS . Plant stem cells and de novo organogenesis. New Phytol. 2018; 218: 1334-9

[2]

Tian X, Zhang C, Xu J . Control of cell fate reprogramming towards de novo shoot organogenesis. Plant Cell Physiol. 2018; 59: 713-9

[3]

Lee K, Park OS, Choi CY, et al. ARABIDOPSIS TRITHORAX 4 facilitates shoot identity establishment during the plant regeneration process. Plant Cell Physiol. 2019; 60: 826-34

[4]

Weigel D, Jurgens G . Stem cells that make stems. Nature. 2002; 415: 751-4

[5]

Verdeil JL, et al. Pluripotent versus totipotent plant stem cells: dependence versus autonomy? Trends Plant Sci. 2007; 12: 245-52

[6]

Ikeuchi M, Ogawa Y, Iwase A, et al. Plant regeneration: cellular origins and molecular mechanisms. Development. 2016; 143: 1442-51

[7]

Duclercq J, Sangwan-Norreel B, Catterou M, et al. De novo shoot organogenesis: from art to science. Trends Plant Sci. 2011; 16: 597-606

[8]

Druege U, Franken P, Hajirezaei MR . Plant hormone homeostasis, signaling, and function during adventitious root formation in cuttings. Front Plant Sci. 2016; 7: 381

[9]

Li X, Shen F, Xu X, et al. An HD-ZIP transcription factor, MxHB13, integrates auxin-regulated and juvenility-determined control of adventitious rooting in Malus xiaojinensis. Plant J. 2021; 107: 1663-80

[10]

Mao JP, Ma D, Niu C, et al. Transcriptome analysis reveals the regulatory mechanism by which MdWOX11 suppresses adventitious shoot formation in apple. Hortic Res. 2022; 9: uhac080

[11]

Velasco R, Zharkikh A, Affourtit J, et al. The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet. 2010; 42: 833-9

[12]

Dong QL, Duan D, Zheng W, et al. MdVQ37 overexpression reduces basal thermotolerance in transgenic apple by affecting transcription factor activity and salicylic acid homeostasis. Hortic Res. 2021; 8: 220

[13]

Daccord N, Celton JM, Linsmith G, et al. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nat Genet. 2017; 49: 1099-106

[14]

Zhang LY, Hu J, Han X, et al. A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour. Nat Commun. 2019; 10: 1494

[15]

Chen JJ, Tomes S, Gleave AP, et al. Significant improvement of apple (Malus domestica Borkh.) transgenic plant production by pre-transformation with a Baby boom transcription factor . Hortic Res. 2022; 9: uhab014

[16]

Maren NA, Duan H, da K, et al. Genotype-independent plant transformation. Hortic Res. 2022; 9: uhac047

[17]

Chugh S, Guha S, Rao IU . Micropropagation of orchids: a review on the potential of different explants. Sci Hortic. 2009; 122: 507-20

[18]

De Bondt A, Eggermont K, Penninckx I, et al. Agrobacterium-mediated transformation of apple (Malus x domestica Borkh.): an assessment of factors affecting regeneration of transgenic plants . Plant Cell Rep. 1996; 15: 549-54

[19]

Schroepfer S, Lempe J, Emeriewen OF, et al. Recent developments and strategies for the application of Agrobacterium-mediated transformation of apple Malus × domestica Borkh. Front Plant Sci. 2022; 13: 928292

[20]

Dai HY, Li W, Han G, et al. Development of a seedling clone with high regeneration capacity and susceptibility to Agrobacterium in apple . Sci Hortic. 2013; 164: 202-8

[21]

Han XL, Liu K, Yuan G, et al. Genome-wide identification and characterization of AINTEGUMENTA-LIKE (AIL) family genes in apple (Malus domestica Borkh.). Genomics. 2022; 114: 110313

[22]

Zhang TQ, Lian H, Tang H, et al. An intrinsic microRNA timer regulates progressive decline in shoot regenerative capacity in plants. Plant Cell. 2015; 27: 349-60

[23]

Cheng ZJ, Wang L, Sun W, et al. Pattern of auxin and cytokinin responses for shoot meristem induction results from the regulation of cytokinin biosynthesis by AUXIN RESPONSE FACTOR3. Plant Physiol. 2013; 161: 240-51

[24]

Werner T, Motyka V, Laucou V, et al. Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity . Plant Cell. 2003; 15: 2532-50

[25]

Inoue T, Higuchi M, Hashimoto Y, et al. Identification of CRE1 as a cytokinin receptor from Arabidopsis. Nature. 2001; 409: 1060-3

[26]

Suzuki T, Miwa K, Ishikawa K, et al. The Arabidopsis sensor his-kinase, AHK4, can respond to cytokinins . Plant Cell Physiol. 2001; 42: 107-13

[27]

Zhang TQ, Lian H, Zhou CM, et al. A two-step model for de novo activation of WUSCHEL during plant shoot regeneration. Plant Cell. 2017; 29: 1073-87

[28]

Werner T, Schmulling T . Cytokinin action in plant development. Curr Opin Plant Biol. 2009; 12: 527-38

[29]

Sharma A, Prakash S, Chattopadhyay D . Killing two birds with a single stone - genetic manipulation of cytokinin oxidase/dehydrogenase (CKX) genes for enhancing crop productivity and amelioration of drought stress response. Front Genet. 2022; 13: 941595

[30]

Yang SH, Yu H, Goh CJ . Functional characterisation of a cytokinin oxidase gene DSCKX1 in Dendrobium orchid . Plant Mol Biol. 2003; 51: 237-48

[31]

Fan MZ, Xu C, Xu K, et al. LATERAL ORGAN BOUNDARIES DOMAIN transcription factors direct callus formation in Arabidopsis regeneration . Cell Res. 2012; 22: 1169-80

[32]

Ckurshumova W, Smirnova T, Marcos D, et al. Irrepressible MONOPTEROS/ARF5 promotes de novo shoot formation. New Phytol. 2014; 204: 556-66

[33]

Wang YL, He S, Long Y, et al. Genetic variations in ZmSAUR15 contribute to the formation of immature embryo-derived embryonic calluses in maize. Plant J. 2022; 109: 980-91

[34]

Shin J, Bae S, Seo PJ . De novo shoot organogenesis during plant regeneration. J Exp Bot. 2020; 71: 63-72

[35]

Bouchabke-Coussa O, Obellianne M, Linderme D, et al. Wuschel overexpression promotes somatic embryogenesis and induces organogenesis in cotton (Gossypium hirsutum L.) tissues cultured in vitro . Plant Cell Rep. 2013; 32: 675-86

[36]

Rashid SZ, Yamaji N, Kyo M . Shoot formation from root tip region: a developmental alteration by WUS in transgenic tobacco. Plant Cell Rep. 2007; 26: 1449-55

[37]

Arroyo-Herrera A, Ku Gonzalez A, Canche Moo R, et al. Expression of WUSCHEL in Coffea canephora causes ectopic morphogenesis and increases somatic embryogenesis . Plant Cell Tissue Org Cult. 2008; 94: 171-80

[38]

Gallois JL, Woodward C, Reddy GV, et al. Combined SHOOT MERISTEMLESS and WUSCHEL trigger ectopic organogenesis in Arabidopsis. Development. 2002; 129: 3207-17

[39]

Zuo JR, Niu QW, Frugis G, et al. The WUSCHEL gene promotes vegetative-to-embryonic transition in Arabidopsis. Plant J. 2002; 30: 349-59

[40]

Long JA, Moan EI, Medford JI, et al. A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature. 1996; 379: 66-9

[41]

Horstman A, Li M, Heidmann I, et al. The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis. Plant Physiol. 2017; 175: 848-57

[42]

Boutilier K, Offringa R, Sharma VK, et al. Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth. Plant Cell. 2002; 14: 1737-49

[43]

Lutz KA, Martin C, Khairzada S, et al. Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture . Plant Cell Rep. 2015; 34: 1849-56

[44]

Srinivasan C, Liu Z, Heidmann I, et al. Heterologous expression of the BABY BOOM AP2/ERF transcription factor enhances the regeneration capacity of tobacco (Nicotiana tabacum L.). Planta. 2007; 225: 341-51

[45]

Yang HF, Kou YP, Gao B, et al. Identification and functional analysis of BABY BOOM genes from Rosa canina. Biol Plant. 2014; 58: 427-35

[46]

Kareem A, Durgaprasad K, Sugimoto K, et al. PLETHORA genes control regeneration by a two-step mechanism. Curr Biol. 2015; 25: 1017-30

[47]

Nole-Wilson S, Tranby TL, Krizek BA . AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states. Plant Mol Biol. 2005; 57: 613-28

[48]

Song CH, Zhang D, Zheng L, et al. Genome-wide identification and expression profiling of the YUCCA gene family in Malus domestica. Sci Rep. 2020; 10: 10866

[49]

Meng WJ, Cheng ZJ, Sang YL, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs specify the shoot stem cell niche by dual regulation of WUSCHEL. Plant Cell. 2017; 29: 1357-72

[50]

Chatfield SP, Raizada MN . Ethylene and shoot regeneration: hookless1 modulates de novo shoot organogenesis in Arabidopsis thaliana. Plant Cell Rep. 2008; 27: 655-66

[51]

Liu H, Zhang H, Dong YX, et al. DNA METHYLTRANSFERASE1-mediated shoot regeneration is regulated by cytokinin-induced cell cycle in Arabidopsis. New Phytol. 2018; 217: 219-32

[52]

Che P, Lall S, Howell SH . Developmental steps in acquiring competence for shoot development in Arabidopsis tissue culture . Planta. 2007; 226: 1183-94

[53]

Atta R, Laurens L, Boucheron-Dubuisson E, et al. Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grown in vitro . Plant J. 2009; 57: 626-44

[54]

Ikeda Y, Banno H, Niu QW, et al. The ENHANCER OF SHOOT REGENERATION 2 gene in Arabidopsis regulates CUP-SHAPED COTYLEDON 1 at the transcriptional level and controls cotyledon development . Plant Cell Physiol. 2006; 47: 1443-56

[55]

Kareem A, Durgaprasad K, Sugimoto K, et al. PLETHORA genes control regeneration by a two-step mechanism. Curr Biol. 2015; 25: 1017-30

[56]

Love MI, Huber W, Anders S . Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014; 15: 550

[57]

Nole-Wilson S, Krizek BA . DNA binding properties of the Arabidopsis floral development protein AINTEGUMENTA . Nucleic Acids Res. 2000; 28: 4076-82

[58]

Horstman A, Willemsen V, Boutilier K, et al. AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. Trends Plant Sci. 2014; 19: 146-57

[59]

Yamagishi K, Tatematsu K, Yano R, et al. CHOTTO1, a double AP2 domain protein of Arabidopsis thaliana, regulates germination and seedling growth under excess supply of glucose and nitrate . Plant Cell Physiol. 2009; 50: 330-40

[60]

Yano R, Kanno Y, Jikumaru Y, et al. CHOTTO1, a putative double APETALA2 repeat transcription factor, is involved in abscisic acid-mediated repression of gibberellin biosynthesis during seed germination in Arabidopsis. Plant Physiol. 2009; 151: 641-54

[61]

Pinon V, Prasad K, Grigg SP, et al. Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis. Proc Natl Acad Sci USA. 2013; 110: 1107-12

[62]

Mao JP, Niu C, Li K, et al. Cytokinin-responsive MdTCP17 interacts with MdWOX11 to repress adventitious root primordium formation in apple rootstocks. Plant Cell. 2023; 35: 1202-21

[63]

da Costa CT, de Almeida MR, Ruedell CM, et al. When stress and development go hand in hand: main hormonal controls of adventitious rooting in cuttings. Front Plant Sci. 2013; 4: 133

[64]

Bellini C, Pacurar DI, Perrone I . Adventitious roots and lateral roots: similarities and differences. Annu Rev Plant Biol. 2014; 65: 639-66

[65]

Liu JC, Sheng L, Xu Y, et al. WOX11 and 12 are involved in the first-step cell fate transition during de novo root organogenesis in Arabidopsis. Plant Cell. 2014; 26: 1081-93

[66]

Wang DK, Pei K, Fu Y, et al. Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene. 2007; 394: 13-24

[67]

Rademacher EH, Lokerse AS, Schlereth A, et al. Different auxin response machineries control distinct cell fates in the early plant embryo. Dev Cell. 2012; 22: 211-22

[68]

Sun QR, Sun M, Sun H, et al. Comparative organogenic response of six clonal apple rootstock cultivars. HortScience. 2016; 51: 272-8

[69]

Sun QR, Sun HY, Bell RL, et al. Optimisation of the media for in vitro shoot proliferation and root induction in three new cold-hardy and dwarfing or semi-dwarfing clonal apple rootstocks. J Hortic Sci Biotechnol. 2014; 89: 381-8

[70]

Liu Y, Wang L, Liu H, et al. The antioxidative defense system is involved in the premature senescence in transgenic tobacco (Nicotiana tabacum NC89). Biol Res. 2016; 49: 30

[71]

Livak KJ, Schmittgen TD . Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 2013; 25: 402-8

[72]

Dobrev PI, Kaminek M . Fast and efficient separation of cytokinins from auxin and abscisic acid and their purification using mixed-mode solid-phase extraction. J Chromatogr A. 2002; 950: 21-9

[73]

Wen B, Mei Z, Zeng C, et al. metaX: a flexible and comprehensive software for processing metabolomics data. BMC Bioinformatics. 2017; 18: 183

[74]

Conesa A, Madrigal P, Tarazona S, et al. A survey of best practices for RNA-seq data analysis. Genome Biol. 2016; 17: 13

[75]

Jia D, Shen F, Wang Y, et al. Apple fruit acidity is genetically diversified by natural variations in three hierarchical epistatic genes: MdSAUR37, MdPP2CH and MdALMTII. Plant J. 2018; 95: 427-43

[76]

Yuan G, Bian S, Han X, et al. An integrated transcriptome and proteome analysis reveals new insights into russeting of bagging and non-bagging "Golden delicious" apple. Int J Mol Sci. 2019; 20: 4462

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