The high-quality genome of lotus reveals tandem duplicate genes involved in stress response and secondary metabolites biosynthesis

Huanhuan Qi , Feng Yu , Jiao Deng , Liangsheng Zhang , Pingfang Yang

Horticulture Research ›› 2023, Vol. 10 ›› Issue (5) : 040

PDF (568KB)
Horticulture Research ›› 2023, Vol. 10 ›› Issue (5) :040 DOI: 10.1093/hr/uhad040
Letter to the Editor
research-article
The high-quality genome of lotus reveals tandem duplicate genes involved in stress response and secondary metabolites biosynthesis
Author information +
History +
PDF (568KB)

Abstract

Cite this article

Download citation ▾
Huanhuan Qi, Feng Yu, Jiao Deng, Liangsheng Zhang, Pingfang Yang. The high-quality genome of lotus reveals tandem duplicate genes involved in stress response and secondary metabolites biosynthesis. Horticulture Research, 2023, 10 (5) : 040 DOI:10.1093/hr/uhad040

登录浏览全文

4963

注册一个新账户 忘记密码

Acknowledgements

We would like to acknowledge Rebecca Njeri Damaris for revising the manuscript. This work was supported by the National Natural Science Foundation of China (NSFC no. 32102422).

Author contributions

P.Y. and L.Z. conceived and designed the project. H.Q. and F.Y. performed data analysis. H.Q. drafted the manuscript. J.D., L.Z., P.Y., and F.Y. discussed and revised the manuscript. All authors contributed to and approved the final manuscript.

Data availability

The whole genome sequence data reported in this paper have been deposited in the Genome Warehouse in the National Genomics Data Center [10], Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation, under accession number GWHBQCP00000000 that is publicly accessible at https://ngdc.cncb.ac.cn/gwh.

Conflict of interest

The authors declare there is no conflict of interest.

Supplementary data

Supplementary data is available at Horticulture Research online.

References

[1]

Guo HB . Cultivation of lotus (Nelumbo nucifera Gaertn. Ssp. Nucifera) and its utilization in China . Genet Resour Crop Evol. 2009; 56: 323-30.

[2]

Ming R, VanBuren R, Liu Y et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biol. 2013; 14: R41.

[3]

Shi T, Rahmani RS, Gugger PF et al. Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants. Mol Biol Evol. 2020; 37: 2394-413.

[4]

Zheng X, Wang T, Cheng T et al. Genomic variation reveals demographic history and biological adaptation of the ancient relictual, lotus (Nelumbo Adans). Hortic Res. 2022; 9: uhac029.

[5]

Ou S, Chen J, Jiang N . Assessing genome assembly quality using the LTR assembly index (LAI). Nucleic Acids Res. 2018; 46: e126.

[6]

Wang Y, Tang H, Debarry JD et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 2012; 40: e49.

[7]

Lloyd A, Brockman A, Aguirre L et al. Advances in the MYB-bHLH-WD repeat (MBW) pigment regulatory model: addition of a WRKY factor and co-option of an anthocyanin MYB for betalain regulation. Plant Cell Physiol. 2017; 58: 1431-41.

[8]

Sun SS, Gugger PF, Wang QF et al. Identification of a R2R3-MYB gene regulating anthocyanin biosynthesis and relationships between its variation and flower color difference in lotus (Nelumbo Adans.). Peer J. 2016; 4: e2369.

[9]

Deng X, Zhao L, Fang T et al. Investigation of benzylisoquinoline alkaloid biosynthesis pathway and its transcriptional regulation in lotus. Hortic Res. 2018; 5: 29.

[10]

Chen M, Ma Y, Wu S et al. Genome warehouse: a public repository housing genome-scale data. Genomics Proteomics Bioinformatics. 2021; 19: 584-9.

PDF (568KB)

78

Accesses

0

Citation

Detail

Sections
Recommended

/