miR164g-MsNAC022 acts as a novel module mediating drought response by transcriptional regulation of reactive oxygen species scavenging systems in apple

Xiang Peng , Chen Feng , Yan-Tao Wang , Xiang Zhang , Yan-Yan Wang , Yue-Ting Sun , Yu-Qin Xiao , Ze-Feng Zhai , Xin Zhou , Bing-Yang Du , Chao Wang , Yang Liu , Tian-Hong Li

Horticulture Research ›› 2022, Vol. 9 ›› Issue (1) : uhac192

PDF (2852KB)
Horticulture Research ›› 2022, Vol. 9 ›› Issue (1) :uhac192 DOI: 10.1093/hr/uhac192
Article
research-article
miR164g-MsNAC022 acts as a novel module mediating drought response by transcriptional regulation of reactive oxygen species scavenging systems in apple
Author information +
History +
PDF (2852KB)

Abstract

Under drought stress, reactive oxygen species (ROS) overaccumulate as a secondary stress that impairs plant performance and thus severely reduces crop yields. The mitigation of ROS levels under drought stress is therefore crucial for drought tolerance. MicroRNAs (miRNAs) are critical regulators of plant development and stress responses. However, the complex molecular regulatory mechanism by which they function during drought stress, especially in drought-triggered ROS scavenging, is not fully understood. Here, we report a newly identified drought-responsive miRNA, miR164g, in the wild apple species Malus sieversii and elucidate its role in apple drought tolerance. Our results showed that expression of miR164g is significantly inhibited under drought stress and it can specifically cleave transcripts of the transcription factor MsNAC022 in M. sieversii. The heterologous accumulation of miR164g in Arabidopsis thaliana results in enhanced sensitivity to drought stress, while overexpression of MsNAC022 in Arabidopsis and the cultivated apple line ‘GL-3’ ( Malus domestica Borkh.) lead to enhanced tolerance to drought stress by raising the ROS scavenging enzymes activity and related genes expression levels, particularly PEROXIDASE (MsPOD). Furthermore, we showed that expression of MsPOD is activated by MsNAC022 in transient assays. Interestingly, Part1 (P1) region is the key region for the positive regulation of MsPOD promoter by MsNAC022, and the different POD expression patterns in M. sieversii and M. domestica is attributed to the specific fragments inserted in P1 region of M. sieversii. Our findings reveal the function of the miR164g- MsNAC022 module in mediating the drought response of M. sieversii and lay a foundation for breeding drought-tolerant apple cultivars.

Cite this article

Download citation ▾
Xiang Peng, Chen Feng, Yan-Tao Wang, Xiang Zhang, Yan-Yan Wang, Yue-Ting Sun, Yu-Qin Xiao, Ze-Feng Zhai, Xin Zhou, Bing-Yang Du, Chao Wang, Yang Liu, Tian-Hong Li. miR164g-MsNAC022 acts as a novel module mediating drought response by transcriptional regulation of reactive oxygen species scavenging systems in apple. Horticulture Research, 2022, 9 (1) : uhac192 DOI:10.1093/hr/uhac192

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Bechtold U, Field B . Molecular mechanisms controlling plant growth during abiotic stress. J Exp Bot. 2018; 69: 2753-8.

[2]

Zhu J . Abiotic stress signaling and responses in plants. Cell. 2016; 167: 313-24.

[3]

Wang S, Liang D, Li C et al. Influence of drought stress on the cellular ultrastructure and antioxidant system in leaves of drought-tolerant and drought-sensitive apple rootstocks. Plant Physiol Biochem. 2012; 51: 81-9.

[4]

Liu B, Cheng L, Ma F et al. Influence of rootstock on drought response in young ‘gale gala’ apple (Malus domestica Borkh.) trees . J Sci Food Agric. 2012; 92: 2421-7.

[5]

Zhao M, Running SW . Drought-induced reduction in global terrestrial net primary production from 2000 through 2009. Science. 2010; 329: 940-3.

[6]

Pennisi E . The blue revolution, drop by drop, gene by gene. Science. 2008; 320: 171-3.

[7]

Liu B, Li M, Cheng L et al. Influence of rootstock on antioxidant system in leaves and roots of young apple trees in response to drought stress. Plant Growth Regul. 2012; 67: 247-56.

[8]

Ma X, Ma F, Mi Y et al. Morphological and physiological responses of two contrasting malus species to exogenous abscisic acid application. Plant Growth Regul. 2008; 56: 77.

[9]

Editorial Board of Fruit Tree Volume. Encyclopedia of Chinese Agriculture (Fruit Tree Volume) . 269 Beijing, China: China Agriculture Press; 1993.

[10]

Gupta A, Rico-Medina A, Caño-Delgado AI . The physiology of plant responses to drought. Science. 2020; 368: 266-9.

[11]

Murata Y, Mori IC, Munemasa S . Diverse stomatal signaling and the signal integration mechanism. Annu Rev Plant Biol. 2015; 66: 369-92.

[12]

Baxter A, Mittler R, Suzuki N . ROS as key players in plant stress signalling. J Exp Bot. 2014; 65: 1229-40.

[13]

Møller IM, Jensen PE, Hansson A . Oxidative modifications to cellular components in plants. Annu Rev Plant Biol. 2007; 58: 459-81.

[14]

Geng D, Lu L, Yan M et al. Physiological and transcriptomic analyses of roots from Malus sieversii under drought stress. J Integr Agric. 2019; 18: 1280-94.

[15]

Apel K, Hirt H . Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol. 2004; 55: 373-99.

[16]

Thirumalaikumar VP, Devkar V, Mehterov N et al. NAC transcription factor JUNGBRUNNEN1 enhances drought tolerance in tomato. Plant Biotechnol J. 2018; 16: 354-66.

[17]

Wu A, Allu AD, Garapati P et al. JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell. 2012; 24: 482-506.

[18]

Fang Y, Liao K, Du H et al. A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice. J Exp Bot. 2015; 66: 6803-17.

[19]

Niu C, Li H, Jiang L et al. Genome-wide identification of drought-responsive microRNAs in two sets of malus from interspecific hybrid progenies. Hortic Res. 2019; 6: 75.

[20]

Ferdous J, Hussain SS, Shi B . Role of microRNAs in plant drought tolerance. Plant Biotechnol J. 2015; 13: 293-305.

[21]

Chen C, Zeng Z, Liu Z et al. Small RNAs, emerging regulators critical for the development of horticultural traits. Hortic Res. 2018; 5: 63.

[22]

Song X, Li Y, Cao X et al. MicroRNAs and their regulatory roles in plant-environment interactions. Annu Rev Plant Biol. 2019; 70: 489-525.

[23]

Singroha G, Sharma P, Sunkur R . Current status of microRNA-mediated regulation of drought stress responses in cereals. Physiol Plant. 2021; 172: 1808-21.

[24]

Li W, Oono Y, Zhu J et al. The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell. 2008; 20: 2238-51.

[25]

Yan J, Zhao C, Zhou J et al. The miR165/166 mediated regulatory module plays critical roles in ABA homeostasis and response in Arabidopsis thaliana . PLoS Genet. 2016; 12: e1006416.

[26]

Lee MH, Jeon HS, Kim HG et al. An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol. 2017; 214: 343-60.

[27]

Kim JH, Woo HR, Kim J et al. Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science. 2009; 323: 1053-7.

[28]

Raman S, Greb T, Peaucelle A et al. Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana . Plant J. 2008; 55: 65-76.

[29]

Nikovics K, Blein T, Peaucelle A et al. The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis . Plant Cell. 2006; 18: 2929-45.

[30]

Guo H, Xie Q, Fei J et al. microRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell. 2005; 17: 1376-86.

[31]

Mallory AC, Dugas DV, Bartel DP et al. microRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol. 2004; 14: 1035-46.

[32]

Li J, Guo G, Guo W et al. miRNA164-directed cleavage of ZmNAC1 confers lateral root development in maize (Zea mays L.) . BMC Plant Biol. 2012; 12: 220.

[33]

Lin D, Zhu X, Qi B et al. SlMIR164A regulates fruit ripening and quality by controlling SlNAM2 and SlNAM3 in tomato . Plant Biotechnol J. 2022.

[34]

Wang W, Wang J, Wu Y et al. Genome-wide analysis of coding and non-coding RNA reveals a conserved miR164- NAC regulatory pathway for fruit ripening . New Phytol. 2020; 225: 1618-34.

[35]

Liu X, Zhang X, Sun B et al. Genome-wide identification and comparative analysis of drought-related microRNAs in two maize inbred lines with contrasting drought tolerance by deep sequencing. PLoS One. 2019; 14: e0219176.

[36]

Kaur A, Gupta OP, Meena NL et al. Comparative temporal expression analysis of MicroRNAs and their target genes in contrasting wheat genotypes during osmotic stress. Appl Biochem Biotechnol. 2017; 181: 613-26.

[37]

Wang T, Chen L, Zhao M et al. Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing . BMC Genomics. 2011; 12: 367.

[38]

Lu S, Sun Y, Chiang VL . Stress-responsive microRNAs in Populus . Plant J. 2008; 55: 131-51.

[39]

Lu X, Dun H, Lian C et al. The role of peu-miR164 and its target PeNAC genes in response to abiotic stress in Populus euphratica . Plant Physiol Biochem. 2017; 115: 418-38.

[40]

Wang Y, Feng C, Zhai Z et al. The apple microR171i-SCARECROW-LIKE PROTEINS26.1 module enhances drought stress tolerance by integrating ascorbic acid metabolism. Plant Physiol. 2020; 184: 194-211.

[41]

Mao H, Wang H, Liu S et al. A transposable element in a NAC gene is associated with drought tolerance in maize seedlings. Nat Commun. 2015; 6: 8326.

[42]

Liao X, Guo X, Wang Q et al. Overexpression of MsDREB6.2 results in cytokinin-deficient developmental phenotypes and enhances drought tolerance in transgenic apple plants. Plant J. 2017; 89: 510-26.

[43]

Gururani Mayank A, Venkatesh J, Tran LSP . Regulation of photosynthesis during abiotic stress-induced photoinhibition. Mol Plant. 2015; 8: 1304-20.

[44]

Chaves MM, Flexas J, Pinheiro C . Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell. Ann Bot. 2009; 103: 551-60.

[45]

Lee S, Seo PJ, Lee H-J et al. A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis. Plant J. 2012; 70: 831-44.

[46]

Naor A, Naschitz S, Peres M et al. Responses of apple fruit size to tree water status and crop load. Tree Physiol. 2008; 28: 1255-61.

[47]

Ding Y, Ma Y, Liu N et al. microRNAs involved in auxin signalling modulate male sterility under high-temperature stress in cotton (Gossypium hirsutum) . Plant J. 2017; 91: 977-94.

[48]

Stief A, Altmann S, Hoffmann K et al. Arabidopsis miR156 gegulates tolerance to recurring environmental stress through SPL transcription factors. Plant Cell. 2014; 26: 1792-807.

[49]

Yang C, Li D, Mao D et al. Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.) . Plant Cell Environ. 2013; 36: 2207-18.

[50]

Kinoshita N, Wang H, Kasahara H et al. IAA-ala Resistant3, an evolutionarily conserved target of miR167, mediates Arabidopsis root architecture changes during high osmotic stress. Plant Cell. 2012; 24: 3590-602.

[51]

Fu R, Zhang M, Zhao Y et al. Identification of salt tolerance-related microRNAs and their targets in maize (Zea mays L.) using high-throughput sequencing and degradome analysis . Front Plant Sci. 2017; 8: 864.

[52]

Fang Y, Xie K, Xiong L . Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice. J Exp Bot. 2014; 65: 2119-35.

[53]

He X, Mu R, Cao W et al. AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J. 2005; 44: 903-16.

[54]

Klein SP, Schneider HM, Perkins AC et al. Multiple integrated root phenotypes are associated with improved drought tolerance. Plant Physiol. 2020; 183: 1011-25.

[55]

Herder GD, Van Isterdael G, Beeckman T et al. The roots of a new green revolution. Trends Plant Sci. 2010; 15: 600-7.

[56]

Hao Y, Wei W, Song Q et al. Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants. Plant J. 2011; 68: 302-13.

[57]

Dat J, Vandenabeele S, Vranová E et al. Dual action of the active oxygen species during plant stress responses. Cell Mol Life Sci. 2000; 57: 779-95.

[58]

Sun X, Wang P, Jia X et al. Improvement of drought tolerance by overexpressing MdATG18a is mediated by modified antioxidant system and activated autophagy in transgenic apple. Plant Biotechnol J. 2018; 16: 545-57.

[59]

Ren Y, Huang Z, Jiang H et al. A heat stress responsive NAC transcription factor heterodimer plays key roles in rice grain filling. J Exp Bot. 2021; 72: 2947-64.

[60]

Ernst HA, Nina Olsen A, Skriver K et al. Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. EMBO Rep. 2004; 5: 297-303.

[61]

Xie Q, Frugis G, Colgan D et al. Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev. 2000; 14: 3024-36.

[62]

Jin C, Li K, Xu X et al. A novel NAC transcription factor, PbeNAC1, of Pyrus betulifolia confers cold and drought tolerance via interacting with PbeDREBs and activating the expression of stress-responsive genes . Front Plant Sci. 2017; 8: 1049.

[63]

Shan W, Kuang J, Lu W et al. Banana fruit NAC transcription factor MaNAC1 is a direct target of MaICE1 and involved in cold stress through interacting with MaCBF1. Plant Cell Environ. 2014; 37: 2116-27.

[64]

Duan N, Bai Y, Sun H et al. Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement. Nat Commun. 2017; 8: 249.

[65]

Peng L, Gu L, Zheng C et al. Expression of MaMAPK gene in seedlings of malus L. under water stress . Acta Biochim Biophys Sin Shanghai. 2006; 38: 281-6.

[66]

Chen K, Song M, Guo Y et al. MdMYB46 could enhance salt and osmotic stress tolerance in apple by directly activating stress-responsive signals. Plant Biotechnol J. 2019; 17: 2341-55.

[67]

Livak KJ, Schmittgen TD . Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method . Methods. 2001; 25: 402-8.

[68]

Kumar S, Stecher G, Li M et al. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018; 35: 1547-9.

[69]

Subramanian B, Gao S, Lercher MJ et al. Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees. Nucleic Acids Res. 2019; 47: W270-5.

[70]

Liu Q, Wang F, Axtell MJ . Analysis of complementarity requirements for plant microRNA targeting using a Nicotiana benthamiana quantitative transient assay. Plant Cell. 2014; 26: 741-53.

[71]

Wei Q, Ma C, Xu Y et al. Control of chrysanthemum flowering through integration with an aging pathway. Nat Commun. 2017; 8: 829.

[72]

Lin R, Ding L, Casola C et al. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science. 2007; 318: 1302-5.

[73]

Liu L, Zhang Y, Tang S et al. An efficient system to detect protein ubiquitination by agroinfiltration in Nicotiana benthamiana . Plant J. 2010; 61: 893-903.

[74]

Clough SJ, Bent AF . Floral dip: a simplified method for agrobacterium-mediated transformation of Arabidopsis thaliana . Plant J. 1998; 16: 735-43.

[75]

Dai H, Li W, Han G et al. Development of a seedling clone with high regeneration capacity and susceptibility to agrobacterium in apple. Sci Hortic. 2013; 164: 202-8.

[76]

Liu X, Hu P, Huang M et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun. 2016; 7: 12768.

[77]

Feng C, Wang Y, Sun Y et al. Expression of the Malus sieversii NF-YB21 encoded gene confers tolerance to osmotic stresses in Arabidopsis thaliana . Int J Mol Sci. 2021; 22: 9777.

[78]

Sun X, Lian H, Liu X et al. The garlic NF-YC gene, AsNF-YC8, positively regulates non-ionic hyperosmotic stress tolerance in tobacco. Protoplasma. 2017; 254: 1353-66.

[79]

Kumar D, Yusuf M, Singh P et al. Histochemical detection of superoxide and H2O2 accumulation in Brassica juncea seedlings. Bio-Protocol. 2014; 4: e1108.

[80]

Jia D, Jiang Q, van Nocker S et al. An apple (Malus domestica) NAC transcription factor enhances drought tolerance in transgenic apple plants . Plant Physiol Biochem. 2019; 139: 504-12.

[81]

Lu P, Chen N, An R et al. A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis . Plant Mol Biol. 2006; 63: 289-305.

[82]

Shinozaki K, Yamaguchi-Shinozaki K . Gene networks involved in drought stress response and tolerance. J Exp Bot. 2006; 58: 221-7.

[83]

Sakuma Y, Maruyama K, Qin F et al. Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression. Proc Natl Acad Sci U S A. 2006; 103: 18822-7.

[84]

Lian X, Zhao X, Zhao Q et al. MdDREB2A in apple is involved in the regulation of multiple abiotic stress responses. Hortic Plant J. 2021; 7: 197-208.

[85]

Hellens RP, Allan AC, Friel EN et al. Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants. Plant Methods. 2005; 1: 13.

PDF (2852KB)

41

Accesses

0

Citation

Detail

Sections
Recommended

/