BrAN contributes to leafy head formation by regulating leaf width in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

Yue Xin , Chong Tan , Che Wang , Yanji Wu , Shengnan Huang , Yue Gao , Lu Wang , Nan Wang , Zhiyong Liu , Hui Feng

Horticulture Research ›› 2022, Vol. 9 ›› Issue (1) : uhac167

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Horticulture Research ›› 2022, Vol. 9 ›› Issue (1) :uhac167 DOI: 10.1093/hr/uhac167
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BrAN contributes to leafy head formation by regulating leaf width in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
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Abstract

Leafy head is an important agronomic trait that determines the yield and quality of Chinese cabbage. The molecular mechanism underlying heading in Chinese cabbage has been the focus of research, and wide leaves are a prerequisite for leafy head formation. In our study, two allelic leafy heading-deficient mutants (lhd1 and lhd2) with narrow leaf phenotypes were screened in an ethyl methanesulfonate mutagenized population from a heading Chinese cabbage double haploid line ‘FT’. Genetic analysis revealed that the mutant trait was controlled by a recessive nuclear gene, which was found to be BraA10g000480.3C by MutMap and Kompetitive allele-specific PCR analyses. As BraA10g000480.3C was the ortholog of ANGUSTIFOLIA in Arabidopsis, which has been found to regulate leaf width by controlling cortical microtubule arrangement and pavement cell shape, we named it BrAN. BrAN in mutant lhd1 carried an SNP (G to A) on intron 2 that co-segregated with the mutant phenotype, and disrupted the exon-intron splice junction generating intron retention and a putative truncated protein. BrAN in mutant lhd2 carried an SNP (G to A) on exon 4 leading to a premature stop codon. The ectopic overexpression of BrAN restored normal leaf phenotype due to abnormal cortical microtubule arrangement and pavement cell shape in the Arabidopsis an-t1 mutant. However, transformation of Bran did not rescue the an-t1 phenotype. These results indicate that BrAN contributes to leafy head formation of Chinese cabbage.

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Yue Xin, Chong Tan, Che Wang, Yanji Wu, Shengnan Huang, Yue Gao, Lu Wang, Nan Wang, Zhiyong Liu, Hui Feng. BrAN contributes to leafy head formation by regulating leaf width in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Horticulture Research, 2022, 9 (1) : uhac167 DOI:10.1093/hr/uhac167

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References

[1]

He YK, Xue WX, Sun YD et al. Leafy head formation of the progenies of transgenic plants of Chinese cabbage with exogenous auxin genes. Cell Res. 2000; 10: 151-60.

[2]

Ito H, Kato T . Studies on the head formation of Chinese cabbage. J Jpn Soc Hortic Sci. 1957; 26: 154-62.

[3]

Li CW . The Chinese Cabbage of China. Beijing: China Agriculture Press; 1984.

[4]

Wang F, Li L, Li H et al. Transcriptome analysis of rosette and folding leaves in Chinese cabbage using high-throughput RNA sequencing. Genomics. 2012; 99: 299-307.

[5]

Liang J, Liu B, Wu J et al. Genetic variation and divergence of genes involved in leaf adaxial-abaxial polarity establishment in Brassica rapa. Front Plant Sci. 2016; 7: 94.

[6]

Guo X, Liang J, Lin R et al. Series-spatial transcriptome profiling of leafy head reveals the key transition leaves for head formation in Chinese cabbage. Front Plant Sci. 2022; 12: 787-826.

[7]

Gu AX, Meng C, Chen YQ et al. Coupling Seq-BSA and RNA-Seq analyses reveal the molecular pathway and genes associated with heading type in Chinese cabbage. Front Genet. 2017; 8: 176-88.

[8]

Sun XX, Luo S, Luo L et al. Genetic analysis of Chinese cabbage reveals correlation between rosette leaf and leafy head variation. Front Plant Sci. 2018; 9: 1455-64.

[9]

Mao YF, Wu F, Yu X et al. MicroRNA319a-targeted Brassica rapa ssp. pekinensis TCP genes modulate head shape in chinese cabbage by differential cell division arrest in leaf regions. Plant Physiol. 2014; 164: 710-20.

[10]

Li JR, Zhang X, Lu Y et al. Characterization of non-heading mutation in heading Chinese cabbage (Brassica rapa L. ssp. pekinensis). Front. Front Plant Sci. 2019; 10: 112-22.

[11]

Sun XX, Gao Y, Lu Y et al. Genetic analysis of the "head top shape" quality trait of Chinese cabbage and its association with rosette leaf variation. Hortic Res. 2021; 8: 106-17.

[12]

Zhang YY, Liang J, Cai X et al. Divergence of three BRX homoeologs in Brassica rapa and its effect on leaf morphology. Hortic Res. 2021; 8: 68-80.

[13]

Ren WQ, Wu F, Bai J et al. BcpLH organizes a specific subset of microRNAs to form a leafy head in Chinese cabbage (Brassica rapa ssp. pekinensis). Hortic Res. 2020; 7: 1-13.

[14]

Yu XH, Peng J, Feng X et al. Cloning and structural and expressional characterization of BcpLH gene preferentially expressed in folding leaf of Chinese cabbage. Sci China Ser C-Life Sci. 2000; 43: 321-9.

[15]

Gao Y, Huang S, Qu G et al. The mutation of ent-kaurene synthase, a key enzyme involved in gibberellin biosynthesis, confers a non-heading phenotype to Chinese cabbage (Brassica rapa L. ssp. pekinensis). Hortic Res. 2020; 7: 1-10.

[16]

Kalve S, De Vos D, Beemster GTS . Leaf development: a cellular perspective. Front Plant Sci. 2014; 5: 362-87.

[17]

Paredez AR, Somerville CR, Ehrhardt DW . Visualization of cellulose synthase demonstrates functional association with microtubules. Science. 2006; 312: 1491-5.

[18]

Gutierrez R, Lindeboom JJ, Paredez AR et al. Arabidopsis cortical microtubules position cellulose synthase delivery to the plasma membrane and interact with cellulose synthase trafficking compartments. Nat Cell Biol. 2009; 11: 797-806.

[19]

Zhao F, du F, Oliveri H et al. Microtubule-mediated wall anisotropy contributes to leaf blade flattening. Curr Biol. 2020; 30: 3972-85.

[20]

Yang BJ, Wendrich JR, De RB et al. Rice microtubule-associated protein IQ67-DOMAIN14 regulates grain shape by modulating microtubule cytoskeleton dynamics. Plant Biotechnol J. 2019; 18: 1141-52.

[21]

Liu X, Yang Q, Wang Y et al. Brassinosteroids regulate pavement cell growth by mediating BIN2-induced microtubule stabilization. J Exp Bot. 2018; 69: 1037-49.

[22]

Tsuge T, Tsukaya H, Uchimiya H . Two independent and polarized processes of cell elongation regulate leaf blade expansion in Arabidopsis thaliana (L.) Heynh. Development. 1996; 122: 1589-600.

[23]

Bai Y, Vaddepalli P, Fulton L et al. ANGUSTIFOLIA is a central component of tissue morphogenesis mediated by the atypical receptor-like kinase STRUBBELIG. Plant Biol. 2013; 13: 16-27.

[24]

Bai Y, Falk S, Schnittger A et al. Tissue layer specific regulation of leaf length and width in Arabidopsis as revealed by the cell autonomous action of ANGUSTIFOLIA. Plant J. 2010; 61: 191-9.

[25]

Folkers U, Kirik V, Schöbinger U et al. The cell morphogenesis gene ANGUSTIFOLIA encodes a CtBP/BARS-like protein and is involved in the control of the microtubule cytoskeleton. EMBO J. 2002; 21: 1280-8.

[26]

Kim GT, Shoda K, Tsuge T et al. The ANGUSTIFOLIA gene of Arabidopsis, a plant CtBP gene, regulates leaf-cell expansion, the arrangement of cortical microtubules in leaf cells and expression of a gene involved in cell-wall formation. EMBO J. 2002; 21: 1267-79.

[27]

Dang X, Yu P, Li Y et al. Reactive oxygen species mediate conical cell shaping in Arabidopsis thaliana petals. PLoS Genet. 2018; 14: e1007705.

[28]

Bhasin H, Hulskamp M . ANGUSTIFOLIA, a plant homolog of CtBP/BARS localizes to stress granules and regulates their formation. Front Plant Sci. 2017; 8: 1004-20.

[29]

Gachomo EW, Jimenez-Lopez JC, Smith SR et al. The cell morphogenesis ANGUSTIFOLIA (AN) gene, a plant homolog of CtBP/BARS, is involved in abiotic and biotic stress response in higher plants. Plant Biol. 2013; 13: 79-89.

[30]

Iwabuchi K, Ohnishi H, Tamura K et al. ANGUSTIFOLIA regulates actin filament alignment for nuclear positioning in leaves. Plant Physiol. 2019; 179: 233-47.

[31]

Xie M, Zhang J, Yao T et al. Arabidopsis C-terminal binding protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33. New Phytol. 2020; 228: 1627-39.

[32]

Gao Y, Qu G, Huang S et al. Comparison between germinated seed and isolated microspore EMS mutagenesis in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Horticulturae. 2022; 8: 232.

[33]

Cheng F, Sun R, Hou X et al. Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea. Nat Genet. 2016; 48: 1218-24.

[34]

Zhang CW, Wei YP, Xiao D et al. Transcriptomic and proteomic analyses provide new insights into the regulation mechanism of low-temperature-induced leafy head formation in Chinese cabbage. J Proteome. 2016; 144: 1-10.

[35]

Yu J, Gao L, Liu W et al. Transcription Coactivator ANGUSTIFOLIA3 (AN3) regulates leafy head formation in Chinese cabbage. Front Plant Sci. 2019; 10: 520-31.

[36]

Fu W, Huang S, Gao Y et al. Role of BrSDG8 on bolting in Chinese cabbage (Brassica rapa). Theor Appl Genet. 2020; 133: 2937-48.

[37]

Zhang CW, Chen F, Zhao Z et al. Mutations in CsPID encoding a Ser/Thr protein kinase are responsible for round leaf shape in cucumber (Cucumis sativus L.). Theor Appl Genet. 2018; 131: 1379-89.

[38]

Sun XX, Basnet RK, Yan Z et al. Genome-wide transcriptome analysis reveals molecular pathways involved in leafy head formation of Chinese cabbage (Brassica rapa). Hortic Res. 2019; 6: 130-42.

[39]

Cho KH, Shindo T, Kim GT et al. Characterization of a member of the AN subfamily, IAN, from Ipomoea nil. Plant Cell Physiol. 2005; 46: 250-5.

[40]

Lin XF, Minamisawa N, Takechi K et al. Isolation and characterization of the Larix gmelinii ANGUSTIFOLIA (LgAN) gene. Planta. 2008; 228: 601-8.

[41]

Minamisawa N, Sato M, Cho KH et al. ANGUSTIFOLIA, a plant homolog of CtBP/BARS, functions outside the nucleus. Plant J. 2011; 68: 788-99.

[42]

Polko JK, Kieber JJ . The regulation of cellulose biosynthesis in plants. Plant Cell. 2019; 31: 282-96.

[43]

Tan C, Liu ZY, Huang SN et al. Mapping of the male sterile mutant gene ftms in Brassica rapa L. ssp. pekinensis via BSR-Seq combined with whole-genome resequencing. Der Züchter. 2019; 132: 355-70.

[44]

Abe A, Kosugi S, Yoshida K et al. Genome sequencing reveals agronomically important loci in rice using MutMap. Nat Biotechnol. 2012; 30: 174-8.

[45]

Li H, Durbin R . Fast and accurate long-read alignment with burrows-wheeler transform. Bioinformatics. 2010; 26: 589-95.

[46]

McKenna A, Hanna M, Banks E et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010; 20: 1297-303.

[47]

Wang K, Li M, Hakonarson H . ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010; 38: e164-4.

[48]

Krzywinski M, Schein J, Birol İ et al. Circos: an information aesthetic for comparative genomics. Genome Res. 2009; 19: 1639-45.

[49]

Livak KJ, Schmittgen TD . Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods. 2001; 25: 402-8.

[50]

Clough SJ, Bent AF . Floral dip: a simplified method for agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998; 16: 735-43.

[51]

Lin S, Dong H, Zhang F et al. BcMF8, a putative arabinogalactan protein-encoding gene, contributes to pollen wall development, aperture formation and pollen tube growth in Brassica campestris. Ann Bot. 2014; 113: 777-88.

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