Autophagic pathway contributes to low-nitrogen tolerance by optimizing nitrogen uptake and utilization in tomato

Jiajian Cao , Xuelian Zheng , Dongling Xie , Hui Zhou , Shujun Shao , Jie Zhou

Horticulture Research ›› 2022, Vol. 9 ›› Issue (1) : uhac068

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Horticulture Research ›› 2022, Vol. 9 ›› Issue (1) :uhac068 DOI: 10.1093/hr/uhac068
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Autophagic pathway contributes to low-nitrogen tolerance by optimizing nitrogen uptake and utilization in tomato
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Abstract

Autophagy is a primary process involved in the degradation and reuse of redundant or damaged cytoplasmic components in eukaryotes. Autophagy has been demonstrated to facilitate nutrient recycling and remobilization by delivering intracellular materials to the vacuole for degradation in plants under nutrient starvation. However, the role of autophagy in nitrogen (N) uptake and utilization remains unknown. Here, we report that the ATG6-dependent autophagic pathway regulates N utilization in tomato (Solanum lycopersicum) under low-nitrogen (LN) conditions. Autophagy-disrupted mutants exhibited weakened biomass production and N accumulation compared with wild-type (WT), while ATG6 overexpression promoted autophagy and biomass production under LN stress. The N content in atg6 mutants decreased while that in ATG6-overexpressing lines increased due to the control of N transporter gene expression in roots under LN conditions. Furthermore, ATG6 -dependent autophagy enhanced N assimilation efficiency and protein production in leaves. Nitrate reductase and nitrite reductase activities and expression were compromised in atg6 mutants but were enhanced in ATG6-overexpressing plants under LN stress. Moreover, ATG6-dependent autophagy increased plant carbon fixation and photosynthetic capacity. The quantum yield of photosystem II, photosynthetic N use efficiency and photosynthetic protein accumulation were compromised in atg6 mutants but were restored in ATG6-overexpressing plants. A WT scion grafted onto atg6 mutant rootstock and an atg6 scion grafted onto WT rootstock both exhibited inhibited LN-induced autophagy and N uptake and utilization. Thus, ATG6-dependent autophagy regulates not only N uptake and utilization as well as carbon assimilation but also nutrient recycling and remobilization in tomato plants experiencing LN stress.

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Jiajian Cao, Xuelian Zheng, Dongling Xie, Hui Zhou, Shujun Shao, Jie Zhou. Autophagic pathway contributes to low-nitrogen tolerance by optimizing nitrogen uptake and utilization in tomato. Horticulture Research, 2022, 9 (1) : uhac068 DOI:10.1093/hr/uhac068

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References

[1]

Wang YY, Cheng YH, Chen KE et al. Nitrate transport, signaling, and use efficiency. Annu Rev Plant Biol. 2018; 69: 85-122.

[2]

Xu G, Fan X, Miller AJ . Plant nitrogen assimilation and use efficiency. Annu Rev Plant Biol. 2012; 63: 153-82.

[3]

Liu J, You L, Amini M et al. A high-resolution assessment on global nitrogen flows in cropland. Proc Natl Acad Sci USA. 2010; 107: 8035-40.

[4]

Lassaletta L, Billen G, Grizzetti B et al. 50 year trends in nitrogen use efficiency of world cropping systems: the relationship between yield and nitrogen input to cropland. Environ Res Lett. 2014; 9: 105011.

[5]

O’Brien JA, Vega A, Bouguyon E et al. Nitrate transport, sensing, and responses in plants. Mol Plant. 2016; 9: 837-56.

[6]

Krapp A . Plant nitrogen assimilation and its regulation: a complex puzzle with missing pieces. Curr Opin Plant Biol. 2015; 25: 115-22.

[7]

Li W, Wang Y, Okamoto M et al. Dissection of the AtNRT2.1:AtNRT2.2 inducible high-affinity nitrate transporter gene cluster. Plant Physiol. 2007; 143: 425-33.

[8]

Balotf S, Kavoosi G, Kholdebarin B . Nitrate reductase, nitrite reductase, glutamine synthetase, and glutamate synthase expression and activity in response to different nitrogen sources in nitrogen-starved wheat seedlings. Biotechnol Appl Biochem. 2016; 63: 220-9.

[9]

Fan X, Tang Z, Tan Y et al. Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields. Proc Natl Acad Sci USA. 2016; 113: 7118-23.

[10]

Martin A, Lee J, Kichey T et al. Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell. 2006; 18: 3252-74.

[11]

Evans JR, Clarke VC . The nitrogen cost of photosynthesis. J Exp Bot. 2019; 70: 7-15.

[12]

Nunes-Nesi A, Fernie AR, Stitt M . Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Mol Plant. 2010; 3: 973-96.

[13]

Wada S, Hayashida Y, Izumi M et al. Autophagy supports biomass production and nitrogen use efficiency at the vegetative stage in rice. Plant Physiol. 2015; 168: 60-73.

[14]

Gao J, Wang F, Sun J et al. Enhanced Rubisco activation associated with maintenance of electron transport alleviates inhibition of photosynthesis under low nitrogen conditions in winter wheat seedlings. J Exp Bot. 2018; 69: 5477-88.

[15]

Li Q, Ding G, Yang N et al. Comparative genome and transcriptome analysis unravels key factors of nitrogen use efficiency in Brassica napus L. Plant Cell Environ. 2020; 43: 712-31.

[16]

Marshall RS, Vierstra RD . Autophagy: the master of bulk and selective recycling. Annu Rev Plant Biol. 2018; 69: 173-208.

[17]

Izumi M, Wada S, Makino A et al. The autophagic degradation of chloroplasts via Rubisco-containing bodies is specifically linked to leaf carbon status but not nitrogen status in Arabidopsis. Plant Physiol. 2010; 154: 1196-209.

[18]

Hanaoka H, Noda T, Shirano Y et al. Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol. 2002; 129: 1181-93.

[19]

Guiboileau A, Yoshimoto K, Soulay F et al. Autophagy machinery controls nitrogen remobilization at the whole-plant level under both limiting and ample nitrate conditions in Arabidopsis. New Phytol. 2012; 194: 732-40.

[20]

Li F, Chung T, Pennington JG et al. Autophagic recycling plays a central role in maize nitrogen remobilization. Plant Cell. 2015; 27: 1389-408.

[21]

Sun X, Jia X, Huo L et al. MdATG18a overexpression improves tolerance to nitrogen deficiency and regulates anthocyanin accumulation through increased autophagy in transgenic apple. Plant Cell Environ. 2018; 41: 469-80.

[22]

Wang Y, Cao JJ, Wang KX et al. BZR1 mediates brassinosteroid-induced autophagy and nitrogen starvation in tomato. Plant Physiol. 2019; 179: 671-85.

[23]

Mizushima N, Yoshimori T, Ohsumi Y . The role of Atg proteins in autophagosome formation. Annu Rev Cell Dev Biol. 2011; 27: 107-32.

[24]

Patel S, Dinesh-Kumar SP . Arabidopsis ATG6 is required to limit the pathogen-associated cell death response. Autophagy. 2008; 4: 20-7.

[25]

Fujiki Y, Yoshimoto K, Ohsumi Y . An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol. 2007; 143: 1132-9.

[26]

Wang P, Nolan TM, Yin Y et al. Identification of transcription factors that regulate ATG8 expression and autophagy in Arabidopsis. Autophagy. 2020; 16: 123-39.

[27]

Zhang Y, Wang Y, Wen W et al. Hydrogen peroxide mediates spermidine-induced autophagy to alleviate salt stress in cucumber. Autophagy. 2021; 17: 2876-90.

[28]

Zhang H, Liu XL, Zhang RX et al. Root damage under alkaline stress is associated with reactive oxygen species accumulation in rice (Oryza sativa L.). Front Plant Sci. 2017; 8: 1580.

[29]

Perchlik M, Tegeder M . Leaf amino acid supply affects photosynthetic and plant nitrogen use efficiency under nitrogen stress. Plant Physiol. 2018; 178: 174-88.

[30]

Guiboileau A, Avila-Ospina L, Yoshimoto K et al. Physiological and metabolic consequences of autophagy deficiency for the management of nitrogen and protein resources in Arabidopsis leaves depending on nitrate availability. New Phytol. 2013; 199: 683-94.

[31]

Yin Z, Pascual C, Klionsky DJ . Autophagy: machinery and regulation. Microb Cell. 2016; 3: 588-96.

[32]

Xu G, Wang S, Han S et al. Plant Bax Inhibitor-1 interacts with ATG6 to regulate autophagy and programmed cell death. Autophagy. 2017; 13: 1161-75.

[33]

Sandalio LM, Romero-Puertas MC . Peroxisomes sense and respond to environmental cues by regulating ROS and RNS signalling networks. Ann Bot. 2015; 116: 475-85.

[34]

Muller LM, Harrison MJ . Phytohormones, miRNAs, and peptide signals integrate plant phosphorus status with arbuscular mycorrhizal symbiosis. Curr Opin Plant Biol. 2019; 50: 132-9.

[35]

Nath M, Tuteja N . NPKS uptake, sensing, and signaling and miRNAs in plant nutrient stress. Protoplasma. 2016; 253: 767-86.

[36]

Signorelli S, Tarkowski LP, Van den Ende W et al. Linking autophagy to abiotic and biotic stress responses. Trends Plant Sci. 2019; 24: 413-30.

[37]

Woo J, Park E, Dinesh-Kumar SP . Differential processing of Arabidopsis ubiquitin-like ATG8 autophagy proteins by ATG4 cysteine proteases. Proc Natl Acad Sci USA. 2014; 111: 863-8.

[38]

Safi A, Medici A, Szponarski W et al. GARP transcription factors repress Arabidopsis nitrogen starvation response via ROS-dependent and -independent pathways. J Exp Bot. 2021; 72: 3881-901.

[39]

Zhan N, Wang C, Chen L et al. S-Nitrosylation targets GSNO reductase for selective autophagy during hypoxia responses in plants. Mol Cell. 2018; 71: 142-54.

[40]

Ventimiglia L, Mutus B . The physiological implications of S-nitrosoglutathione reductase (GSNOR) activity mediating NO signalling in plant root structures. Antioxidants (Basel). 2020; 9: 1206.

[41]

Tsai YC, Koo Y, Delk NA et al. Calmodulin-related CML24 interacts with ATG4b and affects autophagy progression in Arabidopsis. Plant J. 2013; 73: 325-35.

[42]

Liu KH, Niu Y, Konishi M et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature. 2017; 545: 311-6.

[43]

Huang X, Zheng C, Liu F et al. Genetic analyses of the Arabidopsis ATG1 kinase complex reveal both kinase-dependent and independent autophagic routes during fixed-carbon starvation. Plant Cell. 2019; 31: 2973-95.

[44]

Coello P, Hey SJ, Halford NG . The sucrose non-fermenting-1-related (SnRK) family of protein kinases: potential for manipulation to improve stress tolerance and increase yield. J Exp Bot. 2011; 62: 883-93.

[45]

Wang Y, Wang L, Micallef BJ et al. AKINbeta1, a subunit of SnRK1, regulates organic acid metabolism and acts as a global modulator of genes involved in carbon, lipid, and nitrogen metabolism. J Exp Bot. 2020; 71: 1010-28.

[46]

Polge C, Jossier M, Crozet P et al. β-Subunits of the SnRK1 complexes share a common ancestral function together with expression and function specificities; physical interaction with nitrate reductase specifically occurs via AKINβ1-subunit. Plant Physiol. 2008; 148: 1570-82.

[47]

Li XF, Li YJ, An YH et al. AKINbeta1 is involved in the regulation of nitrogen metabolism and sugar signaling in Arabidopsis. J Integr Plant Biol. 2009; 51: 513-20.

[48]

Oldroyd GED, Leyser O . A plant’s diet, surviving in a variable nutrient environment. Science. 2020; 368: eaba0196.

[49]

Ruffel S, Krouk G, Ristova D et al. Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand. Proc Natl Acad Sci USA. 2011; 108: 18524-9.

[50]

Ohkubo Y, Tanaka M, Tabata R et al. Shoot-to-root mobile polypeptides involved in systemic regulation of nitrogen acquisition. Nat Plants. 2017; 3: 17029.

[51]

Acheampong AK, Shanks C, Cheng CY et al. EXO70D isoforms mediate selective autophagic degradation of type-A ARR proteins to regulate cytokinin sensitivity. Proc Natl Acad Sci USA. 2020; 117: 27034-43.

[52]

Khamis S, Lamaze T, Lemoine Y et al. Adaptation of the photosynthetic apparatus in maize leaves as a result of nitrogen limitation: relationships between electron transport and carbon assimilation. Plant Physiol. 1990; 94: 1436-43.

[53]

Mu X, Chen Q, Chen F et al. Within-leaf nitrogen allocation in adaptation to low nitrogen supply in maize during grain-filling stage. Front Plant Sci. 2016; 7: 699.

[54]

Mu X, Chen Q, Chen F et al. A RNA-seq analysis of the response of photosynthetic system to low nitrogen supply in maize leaf. Int J Mol Sci. 2017; 18: 2624.

[55]

Liberloo M, Tulva I, Raim O et al. Photosynthetic stimulation under long-term CO2 enrichment and fertilization is sustained across a closed Populus canopy profile (EUROFACE) . New Phytol. 2007; 173: 537-49.

[56]

Barros JAS, Cavalcanti JHF, Medeiros DB et al. Autophagy deficiency compromises alternative pathways of respiration following energy deprivation in Arabidopsis thaliana. Plant Physiol. 2017; 175: 62-76.

[57]

Ishida H, Yoshimoto K, Izumi M et al. Mobilization of Rubisco and stroma-localized fluorescent proteins of chloroplasts to the vacuole by an ATG gene-dependent autophagic process. Plant Physiol. 2008; 148: 142-55.

[58]

Izumi M, Ishida H, Nakamura S et al. Entire photodamaged chloroplasts are transported to the central vacuole by autophagy. Plant Cell. 2017; 29: 377-94.

[59]

McLoughlin F, Augustine RC, Marshall RS et al. Maize multi-omics reveal roles for autophagic recycling in proteome remodelling and lipid turnover. Nat Plants. 2018; 4: 1056-70.

[60]

Yan MY, Xie DL, Cao JJ et al. Brassinosteroid-mediated reactive oxygen species are essential for tapetum degradation and pollen fertility in tomato. Plant J. 2020; 102: 931-47.

[61]

Xia T, Xiao D, Liu D et al. Heterologous expression of ATG8c from soybean confers tolerance to nitrogen deficiency and increases yield in Arabidopsis. PLoS One. 2012; 7: e37217.

[62]

Royer M, Larbat R, Le Bot J et al. Is the C:N ratio a reliable indicator of C allocation to primary and defence-related metabolisms in tomato? Phytochemistry. 2013; 88: 25-33.

[63]

Livak KJ, Schmittgen TD . Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 2001; 25: 402-8.

[64]

Chi C, Li X, Fang P et al. Brassinosteroids act as a positive regulator of NBR1-dependent selective autophagy in response to chilling stress in tomato. J Exp Bot. 2020; 71: 1092-106.

[65]

Laursen KH, Mihailova A, Kelly SD et al. Is it really organic? - Multi-isotopic analysis as a tool to discriminate between organic and conventional plants. Food Chem. 2013; 141: 2812-20.

[66]

Ramasamy S, TenBerge HFM, Purushothaman S . Yield formation in rice in response to drainage and nitrogen application. Field Crops Res. 1997; 51: 65-82.

[67]

Lv X, Li H, Chen X et al. The role of calcium-dependent protein kinase in hydrogen peroxide, nitric oxide and ABA-dependent cold acclimation. J Exp Bot. 2018; 69: 4127-39.

[68]

Silveira JA, Matos JC, Cecatto VM et al. Nitrate reductase activity, distribution, and response to nitrate in two contrasting Phaseolus species inoculated with Rhizobium spp. Environ Exp Bot. 2001; 46: 37-46.

[69]

Zhong Y, Xu D, Hebelstrup KH et al. Nitrogen topdressing timing modifies free amino acids profiles and storage protein gene expression in wheat grain. BMC Plant Biol. 2018; 18: 353.

[70]

Fang P, Yan M, Chi C et al. Brassinosteroids act as a positive regulator of photoprotection in response to chilling stress. Plant Physiol. 2019; 180: 2061-76.

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