Step 1.1: Maintain hESCs on Mitomycin C-treated mouse embryonic fibroblasts (MEFs) in CDF12 medium (Fig. 2A) or on Matrigel (BD Biosciences)-coated plates in mTeSR medium, up to a maximum of 70 passages.
2 Differentiation of pluripotent stem cells into hMPCs. A The representative image of hESCs with a good growth status. B Representative images of morphological characteristics of 2-day hEB morphology in Step 1.7 (left) and 3-day hEB in Step 1.10. C The representative image of P2 hMPCs sorted by CD73, CD90, and CD105-triple positivity. Scale bars, 400 μm |
Full size|PPT slide
Step 1.2: Three to four days after hESCs seeding, discard the supernatant and rinse twice with DMEM/F12 medium.
Step 1.3: Add 1 mL dispase (0.5 mg/mL) for one well of the 6-well plate and incubate at 37 °C for about 20 min until 60%–80% of the clones have been detached.
[CRITICAL STEP] Don’t keep the clones in the dissociation medium for more than 30 min as doing so greatly decreases cell survival and compromises the following steps.
Step 1.4: Collect the dissociation medium with the clones, and add 2 mL CDF12 medium.
Step 1.5: Let stand for 4 min until the clones sink to the bottom, and discard the supernatant.
Step 1.6: Add 6 mL CDF12 medium, and then repeat Step 1.5 twice to dilute the residual dispase, and then resuspend in 2 mL LCDF12 medium.
Step 1.7: Plate the clones on ultra-low attachment 6-well plates to form human embryoid bodies (hEBs), as shown in Fig. 2B.
[CRITICAL STEP] Clones should be intact and of similar size.
Step 1.8: On the next day, change half of the culture medium with LCDF12 medium and prepare a 6-well dish coated with 0.5% growth factor reduced Matrigel.
Step 1.9: On the next day, transfer 10–14 hEBs to 6-well plates pre-coated with Matrigel. The next day, change the medium to hMPC-DM.
[CRITICAL STEP] hEBs should be of similar size and intact under the stereoscope.
Step 1.10: Change the MPC-DM medium every other day for about ten days until fibroblast-like populations emerge (Fig. 2B).
Step 1.11: Wash the cells twice with PBS. Add 1 mL TrypLE™ Express Enzyme to each well and incubate at 37 °C for about 10 min until 80% of the cells are digested.
Step 1.12: Add 2 mL MPC-DM and collect the cell suspension. Centrifuge the cell suspension at 300 rcf at room temperature for 5 min.
Step 1.13: Discard the supernatant and resuspend the pellet in MPC-CM. Plate 2 × 105 cells per 10-cm dish pre-coated with 0.5% growth factor-reduced Matrigel, and then replace the medium each other day with MPC-CM medium for about 5 d or until cells are reaching 90% confluence.
Step 1.14: Wash once with 1 mL PBS, and digest the cells with 3 mL TrypLE™ Express Enzyme at 37 °C for 2–3 min, neutralize the digestion with 6 mL MPC-CM, collect and centrifuge the cell suspension at 300 rcf at room temperature for 5 min.
Step 1.15: Wash the pellet with 8 mL PBS, resuspend in medium and count cell numbers, and then resuspend the pellet in 100 μL FACS buffer per 106 cells.
Step 1.16: Take out 3 × 105 cells as the negative control for FACS, and add 300 μL FACS buffer in the flow tube. Then add antibody mixture including 1 μL CD73-PE, 0.5 μL CD90-FITC (488), 0.5 μL CD105-APC per 100 μL, and incubate at 4 °C for 30 min in the dark. Gently pipette the cell suspension every 5 min.
Step 1.17: Add 10 mL FACS buffer to wash, and centrifuge the cells and then discard the supernatant.
Step 1.18: Add another 10 mL FACS buffer to washand centrifuge the cells and then discard the supernatant, add 400–500 μL FACS buffer to resuspend and filter the cells through a 40-μm cell strainer, and then transfer them into the flow tube.
Step 1.19: Sort CD73, CD90, and CD105-triple positive cells into the collection tube by Flow cytometer.
[CRITICAL STEP] Select triple positive cells, and maintain cell viability in a sterile environment during flow sorting.
Step 1.20: Centrifuge the sorted cell suspension at 300 rcf at 4 °C for 3 min, and plate 1–2 × 105 cells in hMPC-CM per well of 6-well plates, recording passage 0 (P0). Replace the medium every other day.
Step 1.21: When reaching 95% confluence, hMPCs can be passaged, expanded, and cryopreserved for further use (Fig. 2C).
Step 2.1: Expand or recover P1–P3 hMPCs on 0.1% gelatin pre-coated plates, and culture with MPC-CM until the density is reaching 80% confluence.
[CRITICAL STEP] P1–P3 hMPCs are recommended to use given their superior differentiation potential.
Step 2.2: Infect cells with the lentiviral vector carrying MyoD1 fused with the estrogen receptor (MyoD-ER(T)) with a multiplicity of infection (MOI) < 5.
[CRITICAL STEP] Package the lentiviral vector and titrate the MOI to determine the highest differentiation efficiency-to-MOI rate. The differentiation efficiency is assessed by MyHC-positive myotubes. In general, the efficiency is over 90% after lentivirus transduction.
Step 2.3: Replace the medium with MPC-CM 24 h after lentivirus transduction, and continue culture for another 2 d (Fig. 3A).
3 Differentiation of hMPCs into myotubes. A hMPCs after transfected with MyoD lentivirus for 72 h in Step 2.3. B Representative images of MyoD-overexpressing hMPCs after 4-hydroxytamoxifen induction (A4HI) for 1 and 5 d. C Myotubes induced from hMPCs after 4-hydroxytamoxifen induction for 9 d. Scale bars, 50 μm |
Full size|PPT slide
Step 2.4: Prepare a 6-well dish coated with 0.5% growth factor reduced Matrigel one day before digestion.
Step 2.5: Wash the dish twice with PBS. Add 1 mL TrypLE™ Express Enzyme for one well of the 6-well plate, and incubate at 37 °C for about 3 min until 80% of the cells are digested.
Step 2.6: Add 2 mL MPC-CM, and collect the cell suspension in a 15 mL tube. Centrifuge the cell suspension at 300 rcf at room temperature for 5 min.
Step 2.7: Discard the supernatant and resuspend the pellet in MPC-CM. Plate 2 × 105 cells per well of a 6-well dish pre-coated with 0.5% growth factor reduced Matrigel.
Step 2.8: Replace the medium with MPC-CM containing 1 μmol/L 4-hydroxytamoxifen (which drives activation of the myogenesis regulator Myod1) at 37 °C with 5% CO2 and 3%–5% O2 after 24 h. From now on, cells are cultured in hypoxic conditions (5% CO2 and 3%–5% O2) (Fig. 3B).
Step 2.9: Change the culture medium the next day with MDM containing 1 μmol/L 4-hydroxytamoxifen (Fig. 3B).
Step 2.10: Replace the MDM medium 2 d later and change the MDM medium each other day for about 6 d (Fig. 3C).
Step 2.11: Evaluate the differential efficiency by immunofluorescence staining of MyHC (a standard marker for myotube formation) (Maffioletti
et al. 2015). If the efficiency reaches more than 90%, further analyses can be carried out.
Step 3.1: Myotube senescence induced by genetic manipulation
(A) Gene editing can be performed in hESCs or iPSCs. Alternatively, gene editing can be conducted at the hMPCs stage.
(B) Differentiate gene-edited hESCs or iPSCs into hMPCs according to the above protocol. Then, induce myogenic differentiation from gene-edited hESCs/iPSCs derived hMPC or directly from gene-edited hMPCs by transfecting with MyoD lentivirus according to the above protocol.
(C) Induce hMPC into myotubes following Step 2.
[CRITICAL STEP] The differentiation efficiency of myotube cells derived from gene-edited hESCs/iPSCs or directly gene-edited hMPCs needs to be evaluated before myotube senescence analyses.
(D) On days 5–6 after myotube differentiation initiating, myotube senescence phenotypes would be assessed.
Step 3.2: Myotube senescence induced by prolonged culture
Prolonged culture of human myotubes serves as a convenient model for studying skeletal muscle aging in vitro.
(A) Induce hESCs or iPSCs differentiation into maturated myotube following the above-mentioned Steps 1 and 2.
(B) Collect induced differentiated cell samples on days 6, 10 and 14 after myotube differentiation to examine aging-related phenotypes.
Step 3.3: Myotube senescence induced by siRNA-mediated gene silencing
(A) Purchase siRNA molecules. For one well of the 6-well plate, add 6 μL Lipofectamine RNAiMAX reagent fully mixed with 125 μL Opti-MEM medium.
(B) Dilute siRNA in 125 μL Opti-MEM medium and then mix fully.
(C) Add diluted siRNA duplexes to the diluted Lipofectamine RNAiMAX Reagent (1:1 ratio) and then incubate for 10–15 min at room temperature.
(D) Add siRNA-Lipofectamine RNAiMAX complex solution to matured myotubes and replace with fresh culture medium after 6–8 h.
(E) 48 h after transfection, collect cells and measure the mRNA levels of target genes by RT-qPCR.
(G) 4 d after transfection, collect myotubes for immunofluorescence staining to detect the knockdown efficiency of target genes and to conduct phenotype characterization.
Step 3.4: Reference dosing time points in long-term cultured myotubes
(A) On days 5–6 after initiation of myotube differentiation, treat matured myotubes with the small molecule drug.
(B) For about 4 d, add the small molecule drug freshly to the medium each time when the medium is changed.
Step 3.5: Assays for characterization of myotube senescence
Step 3.5.1: SA-β-gal staining
(A) Wash the cultured myotubes with PBS for two times, and fix them at room temperature for 5 min in a fixation solution containing 2% formaldehyde and 0.2% glutaraldehyde.
(B) Stain with freshly prepared SA-β-gal staining solution at 37 °C overnight.
(C) Take microscopy images and quantify the ratio of senescent myotubes by calculating the proportion of SA-β-gal positive myotubes relative to the total number of myotubes.
Step 3.5.2: Myotube diameter analysis
(A) Wash the cultured myotube cells with PBS for two times, and fix with 4% paraformaldehyde for 15 min at room temperature.
(B) Permeabilize with 0.2% Triton X-100 for 10 min and block with 10% donkey serum for 1 h at room temperature.
(C) Incubate with MyHC antibody (1:100 diluted in 1% donkey serum) at 4 °C overnight.
(D) Wash with PBS and incubate with fluorescence-labeled secondary antibody and Hoechst 33342 at room temperature for 1 h.
(E) Capture images at random with the confocal microscope, and calculate the diameters of more than 100 myotubes for each replicate. The average diameter of senescent myotubes should be decreased.
Step 3.5.3: RT-qPCR analysis
(A) Extract total RNA with TRIzol reagent.
(B) Convert 2 μg RNA to cDNAs using a GoScript Reverse Transcription System (Promega, A5001).
(C) Apply cDNA products to PCR. Primers (for humans) used for RT-qPCR are listed in Table 7. RNA expression levels of CDKN2A, IL6, CXCL8, IL1A, IL1B, IFNA1, and IFNG are expected to increase.
7 Primers (for humans) used for RT-qPCR analysis |
Genes | Sequence |
GAPDH-Forward (5' - 3') | TCGGAGTCAACGGATTTGGT |
GAPDH-Reverse (5' - 3') | TTGCCATGGGTGGAATCATA |
CDKN2A-Forward (5' - 3') | ATGGAGCCTTCGGCTGACT |
CDKN2A-Reverse (5' - 3') | GTAACTATTCGGTGCGTTGGG |
IL6-Forward (5' - 3') | ACTCACCTCTTCAGAACGAATTG |
IL6-Reverse (5' - 3') | CCATCTTTGGAAGGTTCAGGTTG |
CXCL8-Forward (5' - 3') | ACTGAGAGTGATTGAGAGTGGAC |
CXCL8-Reverse (5' - 3') | AACCCTCTGCACCCAGTTTTC |
IL1A-Forward (5' - 3') | TGTAAGCTATGGCCCACTCCA |
IL1A-Reverse (5' - 3') | AGAGACACAGATTGATCCATGCA |
IL1B-Forward (5' - 3') | CTCTCTCCTTTCAGGGCCAA |
IL1B-Reverse (5' - 3') | GAGAGGCCTGGCTCAACAAA |
IFNA1-Forward (5' - 3') | GCCTCGCCCTTTGCTTTACT |
IFNA1-Reverse (5' - 3') | CTGTGGGTCTCAGGGAGATCA |
IFNG-Forward (5' - 3') | TCGGTAACTGACTTGAATGTCCA |
IFNG-Reverse (5' - 3') | TCGCTTCCCTGTTTTAGCTGC |
Step 3.5.4: Western blotting analysis
(A) Lyse myotube cells by heating in lysis buffer at 105 °C for 10 min.
(B) Perform protein quantification using the BCA quantification kit.
(C) Subject protein samples to SDS–PAGE and conduct electrotransfer to PVDF membranes.
(D) Block membranes with 5% milk in TBST (20 mmol/L Tris-HCl, pH 7.5, 140 mmol/L NaCl, 0.1% Tween-20) for 1 h, and incubate with primary antibodies at 4 °C overnight.
(E) Block with HRP-conjugated secondary antibodies at room temperature for 1 h after washing with TBST.
(F) Using a ChemiDoc XRS + System with Image Lab software to image the Western blots.
(G) Perform quantification of the indicated protein bands with ImageJ. Protein levels of P16, P21, and muscular dystrophy-related proteins MuRF1and FBX32 are expected to increase in senescent myotubes.
Step 3.5.5: ELISA analysis
(A) Collect cell medium and filter it with a 0.2-μm filter.
(B) Incubate in the 96-well plate with either anti-IL6 or CXCL8 antibodies according to the manufacturer’s instructions.
(C) Add the standards and cell medium to the wells pre-coated with antibody and incubate for 2 h.
(D) Wash four times and then incubate with Avidin-HRP for 1 h.
(E) Wash four times and add TMB substrate solution to stop the reaction.
(F) Measure the plate at 450 nm and normalize IL6 and CXCL8 levels to the corresponding cell numbers. The expression levels of IL6 and CXCL8 in the culture medium of senescent myotubes are expected to be increased.
Troubleshooting suggestion can be find in Table 8.
Description | Possible reason | Suggestion |
No sufficient hMPCs to initiate subsequent differentiation | Pluripotent cells might contain a substantial population of differentiated cells. | 1. Pluripotent cells must be homogeneous without a substantial population of differentiated cells. 2. The starting population of hESCs or iPSCs for differentiation toward hMPCs should be increased. |
Low differentiation efficiency of myotube | The hMPC differentiation potential is limited. | At the beginning of myotube differentiation, early-passage hMPCs with higher differentiation potential should be used. |
Failure to observe senescence-related phenotypes | Myotube cells are treated and/or collected at inappropriate time points. | It’s necessary to evaluate the senescence phenotypes at multiple time points after initiation of myotube differentiation. |